Wall clock time and date at job start Tue Mar 31 2020 06:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08005 * 120.00291 * 114.36412 * 4 2 1 6 6 C 1.37881 * 120.00259 * 294.36743 * 4 2 1 7 7 N 1.31514 * 120.00212 * 156.61898 * 6 4 2 8 8 Si 1.86795 * 119.99775 * 336.88788 * 6 4 2 9 9 H 1.48501 * 109.47165 * 179.72704 * 8 6 4 10 10 H 1.48500 * 109.47318 * 299.72681 * 8 6 4 11 11 H 1.48500 * 109.47076 * 59.72783 * 8 6 4 12 12 N 1.46498 * 109.46908 * 240.00405 * 2 1 3 13 13 C 1.34776 * 119.99973 * 85.00105 * 12 2 1 14 14 O 1.21275 * 120.00093 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99964 * 179.97438 * 13 12 2 16 16 N 1.46500 * 109.47415 * 180.02562 * 15 13 12 17 17 C 1.39671 * 120.00208 * 180.02562 * 16 15 13 18 18 C 1.38941 * 120.06586 * 359.71572 * 17 16 15 19 19 C 1.38097 * 119.94625 * 179.72487 * 18 17 16 20 20 C 1.38277 * 120.08605 * 0.55555 * 19 18 17 21 21 C 1.38378 * 120.14123 * 359.72379 * 20 19 18 22 22 Cl 1.73601 * 119.98068 * 180.02562 * 21 20 19 23 23 C 1.38241 * 120.04589 * 359.97438 * 21 20 19 24 24 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 25 25 H 1.09007 * 109.46955 * 53.09808 * 1 2 3 26 26 H 1.08994 * 109.47507 * 173.10064 * 1 2 3 27 27 H 0.97003 * 119.99433 * 355.20223 * 7 6 4 28 28 H 0.96999 * 119.99673 * 264.99382 * 12 2 1 29 29 H 1.09007 * 109.46983 * 299.99861 * 15 13 12 30 30 H 1.08994 * 109.47412 * 59.99878 * 15 13 12 31 31 H 0.96999 * 119.99407 * 359.97438 * 16 15 13 32 32 H 1.08001 * 120.02945 * 359.97438 * 18 17 16 33 33 H 1.08006 * 119.95032 * 180.25629 * 19 18 17 34 34 H 1.08008 * 119.92989 * 179.74320 * 20 19 18 35 35 H 1.08005 * 120.04506 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7976 -0.1756 2.4794 7 7 1.8026 -0.9539 3.5395 8 14 1.4651 1.6531 2.6649 9 1 1.2392 1.9724 4.0975 10 1 2.6331 2.4218 2.1647 11 1 0.2588 2.0190 1.8800 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8590 1.1587 -2.4114 15 6 2.6498 -0.7283 -3.5875 16 7 2.6996 0.2132 -4.7088 17 6 3.1364 -0.2176 -5.9636 18 6 3.5296 -1.5373 -6.1485 19 6 3.9556 -1.9620 -7.3916 20 6 4.0022 -1.0727 -8.4495 21 6 3.6169 0.2439 -8.2680 22 17 3.6765 1.3566 -9.5992 23 6 3.1836 0.6736 -7.0276 24 1 -0.3633 0.4033 0.9453 25 1 -0.3633 0.6171 -0.8218 26 1 -0.3634 -1.0201 -0.1234 27 1 1.9020 -1.9133 3.4363 28 1 2.2490 -1.6317 -1.1527 29 1 3.6492 -1.1201 -3.3980 30 1 1.9777 -1.5505 -3.8327 31 1 2.4285 1.1356 -4.5799 32 1 3.4982 -2.2315 -5.3217 33 1 4.2573 -2.9889 -7.5364 34 1 4.3398 -1.4066 -9.4196 35 1 2.8825 1.7011 -6.8860 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609622183.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:07 Heat of formation + Delta-G solvation = -24.230072 kcal Electronic energy + Delta-G solvation = -18801.636050 eV Core-core repulsion = 15631.961121 eV Total energy + Delta-G solvation = -3169.674929 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.90204 -39.06631 -36.79092 -35.54065 -34.79891 -32.61502 -31.13431 -30.41202 -29.35955 -26.52484 -24.90790 -23.03066 -22.01925 -20.85397 -19.76765 -18.34732 -17.63937 -16.75169 -16.01963 -15.88400 -15.50125 -15.07463 -14.54387 -14.19975 -13.87030 -13.78842 -13.56269 -13.07326 -12.92028 -12.72447 -12.28151 -11.95890 -11.83175 -11.66037 -11.50504 -11.44142 -11.08981 -10.57518 -10.25899 -10.20993 -9.92545 -9.50430 -9.24514 -8.97300 -8.39468 -8.36219 -7.63844 -6.68165 -4.29844 1.04948 1.32917 1.93812 2.95919 3.12454 3.34475 3.40301 3.55546 3.57216 3.87775 4.37139 4.64900 4.93013 4.98443 5.02063 5.04024 5.21396 5.25365 5.27384 5.33773 5.60261 5.97399 6.13075 6.25951 6.28214 6.43443 6.44321 6.57017 6.83909 7.04269 7.17636 7.24313 7.52495 7.60931 8.15578 8.27961 8.55721 8.77009 9.36344 10.70494 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.039701 B = 0.002887 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.109766 B = 9695.627856 C =10151.922182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.244 3.756 3 H 0.041 0.959 4 C -0.628 4.628 5 H 0.063 0.937 6 C 0.047 3.953 7 N -0.888 5.888 8 Si 1.033 2.967 9 H -0.282 1.282 10 H -0.280 1.280 11 H -0.274 1.274 12 N -0.695 5.695 13 C 0.497 3.503 14 O -0.553 6.553 15 C 0.102 3.898 16 N -0.727 5.727 17 C 0.237 3.763 18 C -0.199 4.199 19 C -0.058 4.058 20 C -0.178 4.178 21 C 0.017 3.983 22 Cl -0.077 7.077 23 C -0.191 4.191 24 H 0.060 0.940 25 H 0.029 0.971 26 H 0.044 0.956 27 H 0.271 0.729 28 H 0.396 0.604 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.414 0.586 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.241 -1.975 -21.695 22.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.141 3.859 3 H 0.059 0.941 4 C -0.665 4.665 5 H 0.081 0.919 6 C -0.162 4.162 7 N -0.519 5.519 8 Si 0.860 3.140 9 H -0.208 1.208 10 H -0.206 1.206 11 H -0.200 1.200 12 N -0.343 5.343 13 C 0.281 3.719 14 O -0.433 6.433 15 C -0.026 4.026 16 N -0.358 5.358 17 C 0.131 3.869 18 C -0.222 4.222 19 C -0.077 4.077 20 C -0.199 4.199 21 C -0.011 4.011 22 Cl -0.048 7.048 23 C -0.215 4.215 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.229 0.771 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.252 0.748 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.750 0.009 -20.474 20.657 hybrid contribution 0.308 -1.343 -1.109 1.769 sum 3.058 -1.334 -21.583 21.839 Atomic orbital electron populations 1.22430 0.98750 1.00028 1.00279 1.19031 0.90609 0.94153 0.82137 0.94093 1.21990 1.42327 1.11283 0.90925 0.91866 1.25641 0.92899 1.05918 0.91701 1.70874 1.42680 1.06498 1.31871 0.84179 0.77754 0.75638 0.76390 1.20750 1.20644 1.19978 1.46248 1.64445 1.13889 1.09720 1.20350 0.78925 0.87678 0.84979 1.90648 1.51747 1.16020 1.84857 1.21148 1.02453 0.92920 0.86121 1.44463 1.71806 1.13795 1.05728 1.17623 0.91681 0.92622 0.84929 1.20795 1.08000 0.94621 0.98794 1.20824 0.96121 0.99106 0.91610 1.20750 1.07125 0.91741 1.00296 1.20554 1.01157 0.90908 0.88440 1.98363 1.96993 1.62791 1.46688 1.20389 1.09586 1.00444 0.91056 0.92120 0.95218 0.93703 0.91867 0.77098 0.89299 0.89384 0.74767 0.85441 0.85241 0.85511 0.85088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 9.20 37.16 0.34 -3.07 16 2 C 0.24 5.61 2.16 -69.09 -0.15 5.46 16 3 H 0.04 1.03 6.15 -51.93 -0.32 0.71 16 4 C -0.63 -16.37 8.95 -34.44 -0.31 -16.67 16 5 H 0.06 1.71 7.96 -52.48 -0.42 1.29 16 6 C 0.05 1.27 5.19 -17.82 -0.09 1.18 16 7 N -0.89 -25.67 13.70 55.43 0.76 -24.91 16 8 Si 1.03 24.43 26.44 -169.99 -4.50 19.93 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.12 6.14 56.52 0.35 -5.77 16 12 N -0.70 -12.91 5.07 -54.94 -0.28 -13.19 16 13 C 0.50 8.55 7.86 -10.98 -0.09 8.47 16 14 O -0.55 -11.48 15.33 5.56 0.09 -11.40 16 15 C 0.10 1.25 5.39 -5.19 -0.03 1.22 16 16 N -0.73 -9.16 5.70 -59.81 -0.34 -9.50 16 17 C 0.24 2.76 6.65 -83.80 -0.56 2.20 16 18 C -0.20 -2.01 9.31 -39.37 -0.37 -2.38 16 19 C -0.06 -0.52 10.04 -39.62 -0.40 -0.91 16 20 C -0.18 -1.70 9.82 -39.52 -0.39 -2.09 16 21 C 0.02 0.18 6.32 -39.53 -0.25 -0.07 16 22 Cl -0.08 -0.78 28.95 -51.86 -1.50 -2.28 16 23 C -0.19 -2.18 9.68 -39.35 -0.38 -2.56 16 24 H 0.06 1.37 5.47 -51.93 -0.28 1.09 16 25 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.27 7.73 8.73 -40.82 -0.36 7.37 16 28 H 0.40 6.33 8.53 -40.82 -0.35 5.98 16 29 H 0.09 0.94 7.94 -51.92 -0.41 0.53 16 30 H 0.09 0.90 7.96 -51.93 -0.41 0.49 16 31 H 0.41 5.66 7.45 -40.82 -0.30 5.36 16 32 H 0.13 1.10 6.73 -52.49 -0.35 0.74 16 33 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 34 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 35 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 313.51 15.07 4.72 4.72 Total: -1.00 -29.86 313.51 -7.88 -37.74 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -4.17 Total: 8.11 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -2.66 Total: -9.23 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.14 Total: -47.60 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -4.50 Total: 19.93 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.86 -7.88 -37.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609622183.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.509 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds