Wall clock time and date at job start Tue Mar 31 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47119 * 2 1 4 4 C 1.37089 * 120.00291 * 264.74379 * 3 2 1 5 5 H 1.07997 * 120.00188 * 146.16550 * 4 3 2 6 6 C 1.38961 * 120.00044 * 326.17261 * 4 3 2 7 7 N 1.31414 * 119.99703 * 337.67853 * 6 4 3 8 8 Si 1.86795 * 120.00013 * 157.67991 * 6 4 3 9 9 H 1.48496 * 109.47506 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47196 * 119.99984 * 8 6 4 11 11 H 1.48501 * 109.46948 * 239.99634 * 8 6 4 12 12 C 1.34775 * 119.99905 * 84.74965 * 3 2 1 13 13 O 1.21292 * 120.00400 * 179.97438 * 12 3 2 14 14 C 1.50708 * 120.00234 * 359.97438 * 12 3 2 15 15 N 1.46495 * 109.47132 * 180.02562 * 14 12 3 16 16 C 1.39674 * 120.00008 * 179.97438 * 15 14 12 17 17 C 1.38945 * 120.06473 * 359.97438 * 16 15 14 18 18 C 1.38094 * 119.95128 * 180.02562 * 17 16 15 19 19 C 1.38285 * 120.08628 * 359.97233 * 18 17 16 20 20 C 1.38387 * 120.13483 * 0.04534 * 19 18 17 21 21 Cl 1.73597 * 119.97455 * 180.02562 * 20 19 18 22 22 C 1.38238 * 120.05133 * 359.95772 * 20 19 18 23 23 H 1.08999 * 109.46861 * 60.00392 * 1 2 3 24 24 H 1.08998 * 109.46825 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47139 * 299.99987 * 1 2 3 26 26 H 1.08997 * 109.47202 * 239.99508 * 2 1 3 27 27 H 1.09000 * 109.47125 * 120.00344 * 2 1 3 28 28 H 0.96994 * 119.99555 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46533 * 60.00235 * 14 12 3 30 30 H 1.08999 * 109.47080 * 300.00714 * 14 12 3 31 31 H 0.96998 * 119.99992 * 0.02562 * 15 14 12 32 32 H 1.08002 * 120.02936 * 359.97438 * 17 16 15 33 33 H 1.08003 * 119.95619 * 179.97438 * 18 17 16 34 34 H 1.07998 * 119.93298 * 180.02562 * 19 18 17 35 35 H 1.08000 * 120.04493 * 180.29852 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3494 1.9912 -1.1822 5 1 2.1816 3.0506 -1.3088 6 6 2.9007 1.2465 -2.2178 7 7 3.5052 0.1087 -1.9594 8 14 2.7826 1.8630 -3.9772 9 1 2.0583 3.1591 -4.0001 10 1 4.1486 2.0489 -4.5293 11 1 2.0467 0.8705 -4.8010 12 6 2.1423 2.0521 1.1623 13 8 2.5470 3.1955 1.1624 14 6 1.7779 1.3817 2.4620 15 7 1.9987 2.3134 3.5707 16 6 1.7289 1.9150 4.8819 17 6 1.2505 0.6355 5.1362 18 6 0.9839 0.2443 6.4335 19 6 1.1931 1.1240 7.4797 20 6 1.6692 2.3993 7.2305 21 17 1.9309 3.5001 8.5471 22 6 1.9378 2.7969 5.9341 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8904 -0.4109 -2.6822 29 1 2.3993 0.4970 2.6010 30 1 0.7284 1.0884 2.4378 31 1 2.3316 3.2072 3.3941 32 1 1.0863 -0.0523 4.3199 33 1 0.6117 -0.7501 6.6312 34 1 0.9842 0.8153 8.4933 35 1 2.3139 3.7905 5.7401 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609622249.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:02 Heat of formation + Delta-G solvation = -10.943444 kcal Electronic energy + Delta-G solvation = -19347.718605 eV Core-core repulsion = 16178.619828 eV Total energy + Delta-G solvation = -3169.098777 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.56101 -38.62620 -36.58842 -35.44863 -34.59233 -32.19532 -30.80317 -29.67605 -29.52744 -26.80034 -24.56439 -22.75411 -22.38811 -21.46382 -19.13634 -17.78947 -16.88492 -16.32269 -15.74976 -15.50368 -15.19756 -14.67893 -14.36380 -14.10064 -13.63897 -13.56534 -13.49213 -13.05824 -12.80409 -12.38897 -11.91227 -11.78803 -11.72137 -11.39198 -11.28744 -11.16635 -11.04980 -10.89645 -10.52090 -10.39579 -10.21927 -9.91774 -9.08859 -8.75433 -8.65514 -7.65880 -7.31869 -6.46350 -4.07846 1.27885 1.57595 2.12992 3.07257 3.19809 3.25800 3.58228 3.68842 3.81622 4.07997 4.70574 4.87985 4.90537 5.17275 5.23663 5.42367 5.49118 5.57388 5.60865 5.75308 5.83162 5.89305 6.10165 6.20859 6.23844 6.35811 6.39406 6.48960 6.70402 6.77029 7.13880 7.40285 7.48188 7.95460 8.10562 8.34748 9.01991 9.25053 9.80473 10.57207 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.036693 B = 0.003389 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.907255 B = 8260.271782 C = 8760.325778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.091 3.909 3 N -0.430 5.430 4 C -0.311 4.311 5 H 0.095 0.905 6 C 0.037 3.963 7 N -0.866 5.866 8 Si 0.919 3.081 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.279 1.279 12 C 0.446 3.554 13 O -0.582 6.582 14 C 0.108 3.892 15 N -0.721 5.721 16 C 0.242 3.758 17 C -0.201 4.201 18 C -0.057 4.057 19 C -0.184 4.184 20 C 0.018 3.982 21 Cl -0.082 7.082 22 C -0.196 4.196 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.042 0.958 26 H 0.116 0.884 27 H 0.049 0.951 28 H 0.269 0.731 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.412 0.588 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.704 -2.904 13.142 14.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.033 4.033 3 N -0.149 5.149 4 C -0.438 4.438 5 H 0.112 0.888 6 C -0.167 4.167 7 N -0.503 5.503 8 Si 0.746 3.254 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.205 1.205 12 C 0.233 3.767 13 O -0.466 6.466 14 C -0.020 4.020 15 N -0.351 5.351 16 C 0.134 3.866 17 C -0.224 4.224 18 C -0.076 4.076 19 C -0.205 4.205 20 C -0.009 4.009 21 Cl -0.053 7.053 22 C -0.220 4.220 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.134 0.866 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.251 0.749 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.405 -2.525 12.914 14.226 hybrid contribution 0.151 0.442 -0.839 0.961 sum -5.254 -2.083 12.075 13.333 Atomic orbital electron populations 1.22215 0.97905 1.00617 1.01623 1.21679 0.91946 0.85242 1.04450 1.43488 1.54829 1.11877 1.04681 1.19529 1.40163 0.95639 0.88494 0.88763 1.25364 0.94253 0.96416 1.00702 1.69920 1.32148 1.15210 1.33062 0.85985 0.78242 0.79196 0.82024 1.19101 1.20668 1.20464 1.20135 0.83442 0.88315 0.84782 1.90510 1.51096 1.18727 1.86263 1.21195 1.01229 0.92891 0.86695 1.44633 1.71084 1.17632 1.01701 1.17691 0.91766 0.92579 0.84555 1.20802 1.08146 0.95711 0.97754 1.20792 0.96545 0.98740 0.91545 1.20685 1.07313 0.92714 0.99836 1.20528 1.01131 0.91270 0.88003 1.98350 1.95184 1.63618 1.48137 1.20374 1.10427 1.01047 0.90114 0.92271 0.92800 0.93908 0.86588 0.93257 0.92065 0.90264 0.90497 0.74924 0.85478 0.85418 0.85726 0.85222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 10.15 37.16 0.38 -2.38 16 2 C 0.09 1.84 5.43 -4.04 -0.02 1.81 16 3 N -0.43 -10.32 2.56 -114.81 -0.29 -10.61 16 4 C -0.31 -8.28 8.98 -14.93 -0.13 -8.41 16 5 H 0.09 2.65 7.70 -52.49 -0.40 2.25 16 6 C 0.04 0.94 4.92 -17.46 -0.09 0.86 16 7 N -0.87 -22.30 11.33 55.50 0.63 -21.68 16 8 Si 0.92 19.83 29.61 -169.99 -5.03 14.80 16 9 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 12 C 0.45 10.30 7.66 -10.98 -0.08 10.22 16 13 O -0.58 -15.37 15.49 5.55 0.09 -15.28 16 14 C 0.11 1.89 4.00 -5.19 -0.02 1.87 16 15 N -0.72 -12.07 5.70 -59.81 -0.34 -12.41 16 16 C 0.24 3.56 6.65 -83.79 -0.56 3.01 16 17 C -0.20 -2.62 9.31 -39.37 -0.37 -2.99 16 18 C -0.06 -0.64 10.04 -39.62 -0.40 -1.04 16 19 C -0.18 -2.13 9.83 -39.51 -0.39 -2.52 16 20 C 0.02 0.23 6.32 -39.53 -0.25 -0.02 16 21 Cl -0.08 -0.96 28.95 -51.86 -1.50 -2.46 16 22 C -0.20 -2.73 9.68 -39.35 -0.38 -3.11 16 23 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.66 6.59 -51.93 -0.34 0.32 16 26 H 0.12 2.62 5.34 -51.93 -0.28 2.35 16 27 H 0.05 0.89 6.66 -51.93 -0.35 0.54 16 28 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 29 H 0.08 1.32 7.22 -51.93 -0.38 0.94 16 30 H 0.08 1.21 6.34 -51.93 -0.33 0.88 16 31 H 0.41 7.36 7.45 -40.82 -0.30 7.06 16 32 H 0.13 1.53 6.73 -52.49 -0.35 1.18 16 33 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 34 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 310.73 15.07 4.68 4.68 Total: -1.00 -28.71 310.73 -8.06 -36.77 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -3.98 Total: 8.88 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -2.31 Total: -2.70 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -0.01 Total: -44.70 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.09 Total: -15.28 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.03 Total: 14.80 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.71 -8.06 -36.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609622249.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.827 kcal (2) G-P(sol) polarization free energy of solvation -28.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds