Wall clock time and date at job start Tue Mar 31 2020 06:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35707 * 117.00069 * 2 1 4 4 N 1.32244 * 119.68842 * 359.73200 * 3 2 1 5 5 C 1.31948 * 121.65973 * 179.75158 * 4 3 2 6 6 C 1.38082 * 120.85759 * 0.52353 * 5 4 3 7 7 C 1.50696 * 120.35186 * 179.76485 * 6 5 4 8 8 N 1.46493 * 109.47389 * 269.97792 * 7 6 5 9 9 C 1.36938 * 120.00330 * 89.99874 * 8 7 6 10 10 H 1.07999 * 120.00008 * 218.10303 * 9 8 7 11 11 C 1.38806 * 119.99900 * 38.10476 * 9 8 7 12 12 N 1.31623 * 119.99830 * 20.49632 * 11 9 8 13 13 Si 1.86796 * 120.00156 * 200.49830 * 11 9 8 14 14 H 1.48496 * 109.47188 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47319 * 120.00204 * 13 11 9 16 16 H 1.48509 * 109.47275 * 240.00020 * 13 11 9 17 17 C 1.46504 * 119.99958 * 270.00123 * 8 7 6 18 18 C 1.52999 * 117.49986 * 194.00679 * 17 8 7 19 19 C 1.53003 * 117.49768 * 125.34518 * 17 8 7 20 20 C 1.38786 * 119.29446 * 359.73947 * 6 5 4 21 21 C 1.38507 * 118.47593 * 0.02562 * 20 6 5 22 22 Cl 1.73594 * 120.45347 * 180.02562 * 21 20 6 23 23 H 1.08999 * 109.46662 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46990 * 299.99430 * 1 2 3 25 25 H 1.08995 * 109.47108 * 59.99962 * 1 2 3 26 26 H 1.08000 * 119.57434 * 180.24072 * 5 4 3 27 27 H 1.08998 * 109.47145 * 29.97940 * 7 6 5 28 28 H 1.08999 * 109.46903 * 149.97215 * 7 6 5 29 29 H 0.97006 * 119.99743 * 174.96504 * 12 11 9 30 30 H 1.09002 * 115.54651 * 339.68111 * 17 8 7 31 31 H 1.08994 * 117.49833 * 359.97438 * 18 17 8 32 32 H 1.09003 * 117.49598 * 145.02067 * 18 17 8 33 33 H 1.09000 * 117.49490 * 214.97705 * 19 17 8 34 34 H 1.08995 * 117.50392 * 359.97438 * 19 17 8 35 35 H 1.08004 * 120.75903 * 179.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 7 1.3189 2.3143 -0.0054 5 6 1.8771 3.5099 -0.0007 6 6 3.2508 3.6501 -0.0008 7 6 3.8762 5.0212 -0.0008 8 7 4.0793 5.4653 -1.3819 9 6 3.0953 6.1651 -2.0279 10 1 2.9047 5.9865 -3.0758 11 6 2.3429 7.1040 -1.3358 12 7 2.8025 7.6191 -0.2151 13 14 0.6782 7.6366 -1.9948 14 1 0.3932 6.9151 -3.2611 15 1 -0.3741 7.3195 -0.9962 16 1 0.6922 9.0993 -2.2515 17 6 5.3352 5.1608 -2.0722 18 6 5.6284 5.9147 -3.3708 19 6 5.2448 4.4335 -3.4152 20 6 4.0493 2.5150 -0.0004 21 6 3.4334 1.2744 -0.0004 22 17 4.3826 -0.1791 0.0008 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.2515 4.3903 -0.0014 27 1 3.2172 5.7212 0.5128 28 1 4.8365 4.9824 0.5134 29 1 2.3117 8.3276 0.2302 30 1 6.1805 4.9225 -1.4266 31 1 4.8867 6.6370 -3.7119 32 1 6.6668 6.1721 -3.5798 33 1 6.0309 3.7170 -3.6534 34 1 4.2510 4.1811 -3.7851 35 1 5.1262 2.5972 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611033053.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:01 Heat of formation + Delta-G solvation = 41.060979 kcal Electronic energy + Delta-G solvation = -20076.549765 eV Core-core repulsion = 16909.706069 eV Total energy + Delta-G solvation = -3166.843696 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.28926 -37.90653 -36.91052 -36.26948 -33.82847 -32.23250 -31.10291 -29.63363 -27.28583 -25.63389 -23.77668 -23.11979 -21.43116 -21.35547 -19.94526 -18.15574 -16.94879 -16.57440 -15.84794 -15.66341 -15.05270 -14.51483 -14.23049 -14.12326 -13.86041 -13.52471 -12.96746 -12.76415 -12.13984 -11.97284 -11.72050 -11.67283 -11.28218 -10.98154 -10.92701 -10.89103 -10.77803 -10.64601 -10.33029 -10.09809 -9.78038 -9.45861 -9.27171 -9.17099 -8.59657 -7.89825 -6.63717 -6.00091 -3.55099 1.38498 1.63532 2.37083 3.23676 3.25536 3.34500 3.37742 4.05144 4.32326 4.71760 4.88224 5.10546 5.21855 5.23407 5.39035 5.42650 5.44693 5.56009 5.70136 5.79861 5.84304 6.03561 6.14165 6.27624 6.43374 6.45030 6.55630 6.78284 6.82859 6.92921 7.12218 7.35437 7.43979 7.69182 8.15540 8.34943 8.98288 9.59389 10.16791 11.01337 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.016362 B = 0.006442 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.826636 B = 4345.573273 C = 5426.703306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.305 6.305 3 C 0.306 3.694 4 N -0.528 5.528 5 C 0.156 3.844 6 C -0.142 4.142 7 C 0.185 3.815 8 N -0.541 5.541 9 C -0.260 4.260 10 H 0.063 0.937 11 C 0.018 3.982 12 N -0.884 5.884 13 Si 0.894 3.106 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.287 1.287 17 C 0.126 3.874 18 C -0.193 4.193 19 C -0.226 4.226 20 C -0.034 4.034 21 C -0.108 4.108 22 Cl -0.066 7.066 23 H 0.091 0.909 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.164 0.836 27 H 0.111 0.889 28 H 0.043 0.957 29 H 0.260 0.740 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.490 -10.378 1.744 10.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.213 6.213 3 C 0.126 3.874 4 N -0.251 5.251 5 C 0.000 4.000 6 C -0.148 4.148 7 C 0.058 3.942 8 N -0.256 5.256 9 C -0.389 4.389 10 H 0.081 0.919 11 C -0.183 4.183 12 N -0.525 5.525 13 Si 0.723 3.277 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.213 1.213 17 C 0.017 3.983 18 C -0.232 4.232 19 C -0.267 4.267 20 C -0.061 4.061 21 C -0.138 4.138 22 Cl -0.038 7.038 23 H 0.110 0.890 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.181 0.819 27 H 0.129 0.871 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.354 -10.715 1.913 10.890 hybrid contribution -0.171 0.347 -0.573 0.691 sum -0.524 -10.368 1.340 10.467 Atomic orbital electron populations 1.22789 0.77693 1.02383 1.02437 1.86252 1.22435 1.24281 1.88299 1.19366 0.87550 0.85438 0.95079 1.67466 1.39718 0.98655 1.19309 1.22492 0.93258 0.92740 0.91484 1.22152 0.94420 0.99005 0.99194 1.19970 0.98925 0.88058 0.87240 1.43343 1.11750 1.59406 1.11089 1.18981 1.09421 1.15225 0.95294 0.91926 1.25218 0.99688 0.95872 0.97485 1.69886 1.38199 1.25388 1.19029 0.86354 0.84115 0.78321 0.78911 1.19923 1.20964 1.21339 1.21143 0.89972 1.00424 0.86781 1.23078 1.00392 0.94701 1.04989 1.23359 1.01276 0.94376 1.07680 1.21298 1.00863 0.89068 0.94886 1.20818 0.89073 0.89119 1.14755 1.98326 1.71692 1.36445 1.97300 0.89035 0.92483 0.92405 0.81894 0.87139 0.93862 0.93017 0.89329 0.88272 0.90729 0.90894 0.89846 0.84068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.38 101.05 1.05 1.58 16 2 O -0.31 -4.89 9.95 -18.82 -0.19 -5.08 16 3 C 0.31 5.42 7.49 -17.10 -0.13 5.29 16 4 N -0.53 -9.80 9.22 -13.30 -0.12 -9.92 16 5 C 0.16 3.00 10.85 -17.56 -0.19 2.81 16 6 C -0.14 -2.68 5.48 -104.48 -0.57 -3.26 16 7 C 0.18 3.84 5.48 -5.20 -0.03 3.81 16 8 N -0.54 -12.20 2.76 -167.03 -0.46 -12.66 16 9 C -0.26 -6.45 8.04 -15.06 -0.12 -6.58 16 10 H 0.06 1.62 7.23 -52.49 -0.38 1.24 16 11 C 0.02 0.46 4.97 -17.43 -0.09 0.38 16 12 N -0.88 -23.01 11.45 55.49 0.64 -22.37 16 13 Si 0.89 20.11 29.60 -169.99 -5.03 15.08 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 17 C 0.13 2.53 6.61 -67.93 -0.45 2.08 16 18 C -0.19 -3.70 9.81 -26.69 -0.26 -3.96 16 19 C -0.23 -4.23 10.09 -26.69 -0.27 -4.50 16 20 C -0.03 -0.58 9.66 -39.28 -0.38 -0.96 16 21 C -0.11 -1.84 6.36 -39.21 -0.25 -2.09 16 22 Cl -0.07 -0.99 28.54 -51.86 -1.48 -2.47 16 23 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 25 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 26 H 0.16 3.20 8.06 -52.49 -0.42 2.78 16 27 H 0.11 2.58 5.47 -51.93 -0.28 2.29 16 28 H 0.04 0.83 7.99 -51.93 -0.41 0.42 16 29 H 0.26 6.55 8.32 -40.82 -0.34 6.21 16 30 H 0.09 1.61 8.10 -51.93 -0.42 1.19 16 31 H 0.10 2.11 6.95 -51.93 -0.36 1.75 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.08 1.71 8.00 -51.93 -0.42 1.30 16 35 H 0.14 2.15 8.06 -52.48 -0.42 1.72 16 LS Contribution 316.87 15.07 4.78 4.78 Total: -1.00 -26.47 316.87 -7.93 -34.40 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -4.37 Total: 3.64 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -1.69 Total: -5.40 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.05 Total: -44.95 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.19 Total: -5.08 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.08 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.48 Total: -2.47 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -26.47 -7.93 -34.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611033053.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.463 kcal (2) G-P(sol) polarization free energy of solvation -26.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds