Wall clock time and date at job start Tue Mar 31 2020 05:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39995 * 120.46121 * 216.85091 * 3 2 1 5 5 C 1.38198 * 118.37224 * 180.02562 * 4 3 2 6 6 C 1.39513 * 119.20723 * 0.02562 * 5 4 3 7 7 C 1.47951 * 119.57277 * 179.97438 * 6 5 4 8 8 O 1.21569 * 120.00449 * 0.26659 * 7 6 5 9 9 N 1.34784 * 119.99822 * 179.97438 * 7 6 5 10 10 C 1.40489 * 119.99747 * 179.97438 * 9 7 6 11 11 C 1.40680 * 126.08779 * 0.02751 * 10 9 7 12 12 N 1.30895 * 108.38126 * 179.97438 * 11 10 9 13 13 N 1.40065 * 108.42058 * 359.97438 * 12 11 10 14 14 C 1.37317 * 126.06590 * 180.02562 * 13 12 11 15 15 H 1.08006 * 119.99714 * 179.97438 * 14 13 12 16 16 C 1.38991 * 120.00304 * 359.97316 * 14 13 12 17 17 N 1.31289 * 119.99567 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00166 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47440 * 59.99859 * 18 16 14 20 20 H 1.48495 * 109.46920 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47123 * 299.99961 * 18 16 14 22 22 C 1.35708 * 126.08782 * 179.71478 * 10 9 7 23 23 N 1.32835 * 120.85372 * 0.24572 * 6 5 4 24 24 C 1.31298 * 121.78693 * 359.48303 * 23 6 5 25 25 H 4.52937 * 13.94775 * 0.02562 * 4 2 1 26 26 H 1.08004 * 120.81409 * 0.02562 * 4 3 2 27 27 H 1.08000 * 120.39774 * 180.02562 * 5 4 3 28 28 H 0.96999 * 120.00044 * 359.97438 * 9 7 6 29 29 H 1.07993 * 125.80880 * 0.02562 * 11 10 9 30 30 H 0.96999 * 119.99775 * 180.02562 * 17 16 14 31 31 H 1.08007 * 126.24567 * 359.96707 * 22 10 9 32 32 H 1.08000 * 119.65480 * 180.29152 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3153 0.9666 0.7237 5 6 4.6964 0.9272 0.6931 6 6 5.3328 -0.0655 -0.0525 7 6 6.8109 -0.1149 -0.0915 8 8 7.4630 0.7033 0.5276 9 7 7.4346 -1.0706 -0.8086 10 6 8.8383 -1.1171 -0.8460 11 6 9.7144 -0.2358 -0.1866 12 7 10.9433 -0.5956 -0.4580 13 7 10.9013 -1.7163 -1.2971 14 6 11.9865 -2.3892 -1.8021 15 1 11.8402 -3.2461 -2.4431 16 6 13.2733 -1.9677 -1.4884 17 7 13.4511 -0.9264 -0.7089 18 14 14.7496 -2.8827 -2.1760 19 1 14.7104 -2.8416 -3.6599 20 1 15.9986 -2.2393 -1.6953 21 1 14.7134 -4.2952 -1.7189 22 6 9.5903 -2.0237 -1.5198 23 7 4.6287 -0.9637 -0.7322 24 6 3.3157 -0.9633 -0.7245 25 1 -1.0499 -0.0009 -0.0001 26 1 2.7959 1.7240 1.2921 27 1 5.2761 1.6562 1.2397 28 1 6.9144 -1.7262 -1.2989 29 1 9.4227 0.5956 0.4379 30 1 14.3491 -0.6320 -0.4902 31 1 9.2192 -2.8392 -2.1230 32 1 2.7778 -1.7128 -1.2859 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728863306.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:40 Heat of formation + Delta-G solvation = 145.057443 kcal Electronic energy + Delta-G solvation = -19712.133209 eV Core-core repulsion = 16448.691644 eV Total energy + Delta-G solvation = -3263.441565 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.68500 -39.66586 -38.25907 -34.63391 -34.26021 -33.15960 -32.37792 -30.93902 -30.18568 -27.83699 -25.53784 -24.41928 -23.78259 -21.33839 -20.67065 -19.43079 -19.37474 -17.95311 -17.26319 -16.63556 -15.88540 -15.47528 -15.12244 -15.02124 -14.83745 -14.12065 -13.86833 -13.76766 -13.34058 -13.08798 -12.90353 -12.57592 -11.86780 -11.67495 -11.42746 -11.23547 -11.21257 -10.97231 -10.55414 -10.16692 -10.05763 -9.96059 -9.31194 -9.16300 -9.01251 -8.81281 -8.05914 -6.68134 -6.55425 -4.21816 0.17033 0.99593 2.31309 2.38299 2.95884 3.05569 3.09735 3.15423 3.44540 3.61955 3.78385 3.87004 3.91706 4.13059 4.46954 4.50569 4.66385 4.86893 4.92814 5.02896 5.10362 5.46877 5.53748 5.74811 5.85928 6.26767 6.30721 6.47494 6.89379 6.95364 7.07511 7.10850 7.23340 7.54551 7.86075 8.18677 8.28545 8.61087 8.82492 9.37655 9.66687 10.40475 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.060519 B = 0.002889 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.551650 B = 9691.231865 C =10143.938295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.149 4.149 3 C -0.033 4.033 4 C -0.058 4.058 5 C -0.113 4.113 6 C 0.105 3.895 7 C 0.545 3.455 8 O -0.530 6.530 9 N -0.595 5.595 10 C -0.063 4.063 11 C -0.030 4.030 12 N -0.260 5.260 13 N -0.141 5.141 14 C -0.322 4.322 15 H 0.117 0.883 16 C 0.046 3.954 17 N -0.769 5.769 18 Si 0.936 3.064 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.267 1.267 22 C -0.080 4.080 23 N -0.459 5.459 24 C 0.126 3.874 25 H 0.226 0.774 26 H 0.144 0.856 27 H 0.156 0.844 28 H 0.408 0.592 29 H 0.177 0.823 30 H 0.276 0.724 31 H 0.148 0.852 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.041 0.010 0.039 20.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.150 4.150 3 C -0.036 4.036 4 C -0.083 4.083 5 C -0.133 4.133 6 C -0.033 4.033 7 C 0.330 3.670 8 O -0.407 6.407 9 N -0.236 5.236 10 C -0.169 4.169 11 C -0.205 4.205 12 N -0.091 5.091 13 N 0.092 4.908 14 C -0.454 4.454 15 H 0.134 0.866 16 C -0.172 4.172 17 N -0.396 5.396 18 Si 0.759 3.241 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.191 1.191 22 C -0.231 4.231 23 N -0.169 5.169 24 C -0.035 4.035 25 H 0.243 0.757 26 H 0.162 0.838 27 H 0.174 0.826 28 H 0.243 0.757 29 H 0.194 0.806 30 H 0.086 0.914 31 H 0.165 0.835 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -17.600 0.357 0.288 17.606 hybrid contribution -1.328 -0.362 -0.265 1.402 sum -18.928 -0.004 0.022 18.928 Atomic orbital electron populations 1.24923 0.95722 0.98687 0.98710 1.19709 0.91585 1.01874 1.01829 1.17130 0.87933 0.98086 1.00435 1.21654 0.93545 0.96941 0.96210 1.22078 0.94305 0.98737 0.98210 1.21496 0.94772 0.92401 0.94587 1.17562 0.85083 0.82735 0.81636 1.90697 1.64850 1.40345 1.44806 1.42332 1.05095 1.29601 1.46554 1.17289 0.81246 1.04905 1.13493 1.24143 0.89669 1.02201 1.04528 1.78253 1.17776 1.01243 1.11864 1.44559 1.02839 1.16835 1.26571 1.19849 0.82746 1.12423 1.30403 0.86580 1.25654 0.99528 0.96133 0.95843 1.70206 1.23427 1.19529 1.26389 0.85882 0.79241 0.79470 0.79481 1.19137 1.20140 1.19142 1.21286 0.85147 1.05000 1.11693 1.67631 1.08172 1.23253 1.17889 1.22926 0.89128 0.96102 0.95323 0.75683 0.83778 0.82601 0.75715 0.80604 0.91374 0.83491 0.81730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 19.25 29.55 0.57 -0.53 16 2 C -0.15 -1.35 13.28 -38.84 -0.52 -1.86 16 3 C -0.03 -0.34 5.75 -106.69 -0.61 -0.95 16 4 C -0.06 -0.58 9.89 -38.94 -0.39 -0.96 16 5 C -0.11 -1.38 9.61 -39.12 -0.38 -1.76 16 6 C 0.11 1.56 6.75 -82.98 -0.56 1.00 16 7 C 0.55 10.25 7.77 -12.28 -0.10 10.16 16 8 O -0.53 -11.43 13.45 5.30 0.07 -11.36 16 9 N -0.60 -11.50 5.45 -10.82 -0.06 -11.56 16 10 C -0.06 -1.51 6.90 -83.87 -0.58 -2.09 16 11 C -0.03 -0.79 10.85 -17.03 -0.18 -0.98 16 12 N -0.26 -7.64 10.39 30.80 0.32 -7.32 16 13 N -0.14 -3.90 3.74 -11.40 -0.04 -3.95 16 14 C -0.32 -8.56 10.25 -14.82 -0.15 -8.71 16 15 H 0.12 2.74 7.83 -52.48 -0.41 2.33 16 16 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 17 N -0.77 -21.55 11.81 55.50 0.66 -20.90 16 18 Si 0.94 18.97 29.55 -169.99 -5.02 13.94 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 20 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 22 C -0.08 -1.92 11.49 -16.39 -0.19 -2.11 16 23 N -0.46 -6.13 9.51 -9.49 -0.09 -6.22 16 24 C 0.13 1.35 10.91 -17.15 -0.19 1.16 16 25 H 0.23 0.61 7.80 -54.09 -0.42 0.19 16 26 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 27 H 0.16 1.83 7.63 -52.49 -0.40 1.43 16 28 H 0.41 6.71 8.14 -40.82 -0.33 6.38 16 29 H 0.18 4.60 5.91 -52.49 -0.31 4.28 16 30 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.15 2.96 8.06 -52.48 -0.42 2.54 16 32 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 303.22 15.07 4.57 4.57 Total: -1.00 -33.55 303.22 -5.24 -38.79 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -2.28 Total: 10.54 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -3.36 Total: -6.54 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.78 Total: -49.94 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.07 Total: -11.36 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.55 -5.24 -38.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728863306.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.846 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds