Wall clock time and date at job start Tue Mar 31 2020 05:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39732 * 119.58871 * 120.39986 * 3 2 1 5 5 C 1.37972 * 119.20050 * 179.97438 * 4 3 2 6 6 C 1.40241 * 118.39870 * 0.28181 * 5 4 3 7 7 C 1.47658 * 120.44022 * 179.72713 * 6 5 4 8 8 O 1.21606 * 119.99624 * 359.97438 * 7 6 5 9 9 N 1.34770 * 119.99857 * 179.97438 * 7 6 5 10 10 C 1.40520 * 119.99906 * 179.97438 * 9 7 6 11 11 C 1.40675 * 126.08389 * 359.69035 * 10 9 7 12 12 N 1.30909 * 108.38676 * 179.87679 * 11 10 9 13 13 N 1.40074 * 108.40995 * 0.38043 * 12 11 10 14 14 C 1.37318 * 126.06297 * 179.72282 * 13 12 11 15 15 H 1.08000 * 119.99717 * 180.02562 * 14 13 12 16 16 C 1.38982 * 120.00106 * 0.04092 * 14 13 12 17 17 N 1.31293 * 120.00266 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99886 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47505 * 59.99986 * 18 16 14 20 20 H 1.48499 * 109.46893 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46775 * 299.99274 * 18 16 14 22 22 C 1.35697 * 126.09064 * 179.97438 * 10 9 7 23 23 C 1.39674 * 119.11948 * 359.44769 * 6 5 4 24 24 N 1.31474 * 120.70695 * 0.56346 * 23 6 5 25 25 H 4.51262 * 14.17740 * 359.97438 * 4 2 1 26 26 H 1.07994 * 120.39622 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.79550 * 179.97438 * 5 4 3 28 28 H 0.96994 * 120.00616 * 359.97438 * 9 7 6 29 29 H 1.07992 * 125.80545 * 0.03286 * 11 10 9 30 30 H 0.97001 * 120.00508 * 180.02562 * 17 16 14 31 31 H 1.08001 * 126.24297 * 359.96060 * 22 10 9 32 32 H 1.07997 * 119.64656 * 180.28023 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2957 0.6158 -1.0480 5 6 4.6754 0.6122 -1.0397 6 6 5.3343 -0.0188 0.0254 7 6 6.8096 -0.0548 0.0765 8 8 7.4614 0.4646 -0.8091 9 7 7.4336 -0.6632 1.1045 10 6 8.8375 -0.6978 1.1528 11 6 9.7132 -0.1472 0.1994 12 7 10.9425 -0.3756 0.5874 13 7 10.9008 -1.0857 1.7941 14 6 11.9864 -1.5169 2.5161 15 1 11.8404 -2.0594 3.4384 16 6 13.2728 -1.2548 2.0602 17 7 13.4503 -0.5954 0.9388 18 14 14.7495 -1.8421 3.0421 19 1 14.7065 -3.3214 3.1639 20 1 15.9982 -1.4393 2.3467 21 1 14.7177 -1.2327 4.3959 22 6 9.5899 -1.2731 2.1246 23 6 4.5766 -0.6077 1.0402 24 7 3.2627 -0.5836 0.9972 25 1 -1.0500 -0.0007 0.0001 26 1 2.7553 1.0884 -1.8548 27 1 5.2344 1.0796 -1.8368 28 1 6.9137 -1.0771 1.8110 29 1 9.4211 0.3771 -0.6983 30 1 14.3482 -0.4128 0.6203 31 1 9.2191 -1.7858 2.9998 32 1 5.0752 -1.0920 1.8668 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728863486.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:37 Heat of formation + Delta-G solvation = 148.384204 kcal Electronic energy + Delta-G solvation = -19718.107623 eV Core-core repulsion = 16454.810317 eV Total energy + Delta-G solvation = -3263.297306 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.72957 -39.72635 -38.38116 -34.43696 -34.16389 -33.22874 -32.69701 -31.04066 -30.21173 -27.85107 -25.54528 -24.47855 -23.78581 -21.39420 -20.67111 -19.66597 -19.47220 -17.88665 -17.32109 -16.58760 -16.15605 -15.50374 -15.07732 -14.97547 -14.92156 -14.11714 -14.10785 -13.67456 -13.30031 -13.17125 -13.03942 -12.61463 -11.70446 -11.55572 -11.49480 -11.26399 -11.18009 -11.00471 -10.58097 -10.28188 -10.12767 -9.98891 -9.31246 -9.21786 -9.07246 -8.85610 -8.10535 -6.75783 -6.59054 -4.26254 0.16035 0.98550 2.30712 2.34809 2.93106 3.03032 3.07411 3.17097 3.41379 3.59637 3.61154 3.83956 3.87009 4.33044 4.40475 4.56629 4.67289 4.78418 4.87566 4.99098 5.04980 5.27312 5.45817 5.82307 5.87406 6.20563 6.25199 6.40995 6.83158 6.90369 7.03230 7.09930 7.18655 7.53339 7.81431 8.07001 8.21281 8.55043 8.74207 9.33080 9.62030 10.36727 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.060079 B = 0.002884 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.941813 B = 9705.290429 C =10161.371606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.146 4.146 3 C 0.234 3.766 4 C -0.150 4.150 5 C -0.018 4.018 6 C -0.161 4.161 7 C 0.541 3.459 8 O -0.529 6.529 9 N -0.611 5.611 10 C -0.063 4.063 11 C -0.029 4.029 12 N -0.261 5.261 13 N -0.140 5.140 14 C -0.322 4.322 15 H 0.117 0.883 16 C 0.046 3.954 17 N -0.769 5.769 18 Si 0.936 3.064 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.266 1.266 22 C -0.082 4.082 23 C 0.134 3.866 24 N -0.471 5.471 25 H 0.230 0.770 26 H 0.145 0.855 27 H 0.156 0.844 28 H 0.397 0.603 29 H 0.177 0.823 30 H 0.276 0.724 31 H 0.147 0.853 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.349 0.142 -0.132 18.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.147 4.147 3 C 0.099 3.901 4 C -0.170 4.170 5 C -0.044 4.044 6 C -0.166 4.166 7 C 0.327 3.673 8 O -0.407 6.407 9 N -0.253 5.253 10 C -0.169 4.169 11 C -0.205 4.205 12 N -0.091 5.091 13 N 0.093 4.907 14 C -0.454 4.454 15 H 0.134 0.866 16 C -0.172 4.172 17 N -0.395 5.395 18 Si 0.759 3.241 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.191 1.191 22 C -0.233 4.233 23 C -0.026 4.026 24 N -0.179 5.179 25 H 0.247 0.753 26 H 0.163 0.837 27 H 0.173 0.827 28 H 0.231 0.769 29 H 0.194 0.806 30 H 0.087 0.913 31 H 0.165 0.835 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.863 0.362 -0.514 16.875 hybrid contribution -0.258 -0.268 0.454 0.587 sum -17.121 0.094 -0.060 17.121 Atomic orbital electron populations 1.24938 0.95618 0.97347 0.97996 1.19316 0.91050 1.02339 1.01970 1.16709 0.88106 0.94319 0.90947 1.22016 0.94436 1.01062 0.99483 1.21699 0.93407 0.92786 0.96544 1.21254 0.95128 1.02454 0.97772 1.17712 0.86007 0.80711 0.82870 1.90693 1.65883 1.46165 1.37936 1.42382 1.05383 1.53965 1.23569 1.17229 0.81029 1.16734 1.01902 1.24140 0.89645 1.05500 1.01198 1.78277 1.17759 1.15871 0.97238 1.44564 1.02845 1.29907 1.13405 1.19850 0.82741 1.36857 1.05999 0.86560 1.25655 0.99552 0.95730 0.96217 1.70202 1.23503 1.28812 1.16966 0.85881 0.79230 0.79503 0.79467 1.19122 1.20115 1.19117 1.21265 0.85213 1.13982 1.02889 1.22964 0.88650 0.94286 0.96658 1.67710 1.09743 1.16363 1.24131 0.75339 0.83691 0.82674 0.76919 0.80630 0.91329 0.83537 0.81731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 19.25 29.55 0.57 -0.49 16 2 C -0.15 -1.54 13.43 -38.84 -0.52 -2.06 16 3 C 0.23 2.79 6.59 -84.91 -0.56 2.23 16 4 C -0.15 -1.55 9.77 -39.12 -0.38 -1.93 16 5 C -0.02 -0.21 9.70 -38.93 -0.38 -0.59 16 6 C -0.16 -2.17 5.89 -104.76 -0.62 -2.78 16 7 C 0.54 9.38 7.74 -12.42 -0.10 9.28 16 8 O -0.53 -11.04 13.55 5.27 0.07 -10.96 16 9 N -0.61 -10.61 5.42 -10.90 -0.06 -10.67 16 10 C -0.06 -1.43 6.90 -83.86 -0.58 -2.01 16 11 C -0.03 -0.76 10.85 -17.03 -0.18 -0.95 16 12 N -0.26 -7.50 10.40 30.80 0.32 -7.18 16 13 N -0.14 -3.80 3.74 -11.41 -0.04 -3.84 16 14 C -0.32 -8.41 10.25 -14.82 -0.15 -8.56 16 15 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 16 C 0.05 1.17 5.50 -17.51 -0.10 1.08 16 17 N -0.77 -21.28 11.81 55.49 0.66 -20.62 16 18 Si 0.94 18.69 29.55 -169.99 -5.02 13.67 16 19 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 20 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 22 C -0.08 -1.90 11.49 -16.39 -0.19 -2.09 16 23 C 0.13 1.61 10.70 -17.17 -0.18 1.43 16 24 N -0.47 -6.08 10.26 -10.78 -0.11 -6.19 16 25 H 0.23 0.70 7.80 -54.09 -0.42 0.28 16 26 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 27 H 0.16 1.73 7.73 -52.49 -0.41 1.33 16 28 H 0.40 5.21 6.87 -40.82 -0.28 4.93 16 29 H 0.18 4.50 5.91 -52.49 -0.31 4.19 16 30 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.15 2.78 8.06 -52.49 -0.42 2.36 16 32 H 0.17 1.53 6.40 -52.49 -0.34 1.19 16 LS Contribution 301.10 15.07 4.54 4.54 Total: -1.00 -34.28 301.10 -5.17 -39.44 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -2.15 Total: 9.27 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -3.37 Total: -7.45 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.76 Total: -48.51 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.07 Total: -10.96 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.28 -5.17 -39.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728863486.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.827 kcal (2) G-P(sol) polarization free energy of solvation -34.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds