Wall clock time and date at job start Tue Mar 31 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81401 * 109.47102 * 2 1 4 4 C 1.81406 * 103.00091 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47017 * 180.02562 * 4 3 2 6 6 S 1.81397 * 109.46926 * 180.02562 * 5 4 3 7 7 C 1.81410 * 102.99842 * 179.97438 * 6 5 4 8 8 C 1.50693 * 109.46812 * 179.97438 * 7 6 5 9 9 C 1.38629 * 119.75270 * 269.72345 * 8 7 6 10 10 C 1.37622 * 120.25073 * 179.72445 * 9 8 7 11 11 C 1.40711 * 119.74255 * 0.57160 * 10 9 8 12 12 C 1.41400 * 120.24519 * 179.67986 * 11 10 9 13 13 H 1.07993 * 120.00417 * 204.40825 * 12 11 10 14 14 C 1.39949 * 119.99722 * 24.41101 * 12 11 10 15 15 N 1.30829 * 120.00062 * 17.84366 * 14 12 11 16 16 Si 1.86798 * 120.00043 * 197.84420 * 14 12 11 17 17 H 1.48505 * 109.46835 * 60.00206 * 16 14 12 18 18 H 1.48500 * 109.47096 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47401 * 300.00354 * 16 14 12 20 20 C 1.40712 * 119.51307 * 359.70710 * 11 10 9 21 21 C 1.37613 * 119.74639 * 359.97438 * 20 11 10 22 22 H 1.09001 * 109.47276 * 299.99521 * 1 2 3 23 23 H 1.08996 * 109.47303 * 59.99799 * 1 2 3 24 24 H 1.09009 * 109.46939 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47382 * 239.99706 * 2 1 3 26 26 H 1.09005 * 109.47114 * 119.99970 * 2 1 3 27 27 H 1.08998 * 109.46714 * 59.99774 * 4 3 2 28 28 H 1.09000 * 109.46984 * 299.99938 * 4 3 2 29 29 H 1.08999 * 109.47328 * 59.99813 * 5 4 3 30 30 H 1.09003 * 109.46704 * 300.00106 * 5 4 3 31 31 H 1.09001 * 109.46766 * 60.00086 * 7 6 5 32 32 H 1.09000 * 109.46772 * 299.99592 * 7 6 5 33 33 H 1.08007 * 119.87515 * 359.97438 * 9 8 7 34 34 H 1.08002 * 120.12595 * 180.28405 * 10 9 8 35 35 H 0.96994 * 119.99970 * 179.97438 * 15 14 12 36 36 H 1.08000 * 120.12635 * 179.97438 * 20 11 10 37 37 H 1.08000 * 119.87953 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5058 -0.0008 5 6 4.6064 2.8817 -0.0002 6 16 6.4088 2.6773 -0.0018 7 6 7.0135 4.3876 -0.0017 8 6 8.5204 4.3876 -0.0023 9 6 9.2088 4.3932 1.2010 10 6 10.5850 4.3875 1.2124 11 6 11.2932 4.3881 -0.0035 12 6 12.7072 4.3892 -0.0041 13 1 13.2466 4.7761 -0.8559 14 6 13.4078 3.8886 1.0992 15 7 12.8017 3.1149 1.9627 16 14 15.2081 4.3251 1.3388 17 1 15.3479 5.7983 1.4634 18 1 15.7155 3.6731 2.5728 19 1 15.9924 3.8506 0.1705 20 6 10.5840 4.3884 -1.2188 21 6 9.2079 4.3874 -1.2063 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 4.2398 0.9545 -0.8910 28 1 4.2406 0.9542 0.8890 29 1 4.3036 3.4327 0.8902 30 1 4.3029 3.4337 -0.8898 31 1 6.6508 4.9011 0.8888 32 1 6.6494 4.9017 -0.8912 33 1 8.6631 4.3979 2.1330 34 1 11.1193 4.3872 2.1510 35 1 13.2873 2.7677 2.7272 36 1 11.1175 4.3893 -2.1578 37 1 8.6614 4.3872 -2.1378 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760511749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:03 Heat of formation + Delta-G solvation = -9.587364 kcal Electronic energy + Delta-G solvation = -16161.202892 eV Core-core repulsion = 13540.499840 eV Total energy + Delta-G solvation = -2620.703053 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.081 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -37.65808 -34.04354 -33.11391 -32.94660 -31.26562 -29.35157 -27.60837 -24.82568 -23.94318 -22.80280 -21.05717 -20.03444 -17.36726 -16.51286 -16.05931 -15.58106 -15.37753 -14.89598 -14.80886 -14.37808 -13.92790 -13.87929 -13.26693 -13.15971 -12.63142 -12.44948 -12.35510 -12.00785 -11.88840 -11.76961 -11.57252 -11.35409 -11.10563 -11.04723 -10.59524 -10.46739 -10.19421 -9.75422 -9.55663 -9.45015 -9.16564 -7.91918 -7.53547 -7.35299 -7.25692 -6.84409 -4.41897 1.14002 2.01817 2.41141 2.78022 2.99404 3.02156 3.04015 3.06141 3.36908 3.86861 4.56871 4.58797 4.60838 4.68579 4.71248 5.04977 5.33123 5.38042 5.43829 5.48999 5.56606 5.60764 5.72263 5.72590 5.76603 6.12682 6.29723 6.33972 6.89575 6.99215 7.20376 7.28619 7.54104 7.77155 7.97635 8.03203 8.21474 8.55850 8.80497 8.89082 10.09122 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.047683 B = 0.002515 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.073513 B =11128.356463 C =11395.790151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 S -0.266 6.266 4 C -0.062 4.062 5 C -0.083 4.083 6 S -0.268 6.268 7 C 0.001 3.999 8 C -0.212 4.212 9 C -0.078 4.078 10 C -0.168 4.168 11 C 0.117 3.883 12 C -0.455 4.455 13 H 0.080 0.920 14 C 0.074 3.926 15 N -0.785 5.785 16 Si 0.910 3.090 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.265 1.265 20 C -0.228 4.228 21 C -0.066 4.066 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.283 0.717 36 H 0.094 0.906 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.844 -3.465 -1.274 16.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.237 4.237 3 S -0.042 6.042 4 C -0.211 4.211 5 C -0.232 4.232 6 S -0.039 6.039 7 C -0.145 4.145 8 C -0.217 4.217 9 C -0.098 4.098 10 C -0.188 4.188 11 C 0.113 3.887 12 C -0.484 4.484 13 H 0.098 0.902 14 C -0.145 4.145 15 N -0.409 5.409 16 Si 0.735 3.265 17 H -0.187 1.187 18 H -0.203 1.203 19 H -0.189 1.189 20 C -0.248 4.248 21 C -0.086 4.086 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.137 0.863 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.919 -3.667 -1.053 16.369 hybrid contribution 0.848 -0.005 0.175 0.866 sum -15.071 -3.672 -0.878 15.536 Atomic orbital electron populations 1.21512 0.92212 1.02506 1.03210 1.23296 1.00134 0.95258 1.05045 1.86904 1.05926 1.13157 1.98180 1.23065 0.92016 0.99919 1.06075 1.23012 0.96696 0.98135 1.05341 1.87501 1.00281 1.18083 1.98000 1.22005 0.97619 0.91748 1.03177 1.18381 0.89996 1.19161 0.94116 1.20525 0.94663 0.99494 0.95106 1.21292 0.92177 1.06554 0.98779 1.17673 0.93277 0.86758 0.90964 1.19643 0.91526 1.35364 1.01914 0.90238 1.25974 1.01124 0.92570 0.94794 1.69824 1.38851 1.21538 1.10715 0.86329 0.81636 0.80026 0.78556 1.18715 1.20250 1.18909 1.20954 0.93046 1.13730 0.97080 1.20375 0.94224 0.98805 0.95219 0.91675 0.91676 0.91098 0.90032 0.90021 0.89264 0.89242 0.89818 0.89850 0.91093 0.91145 0.89291 0.86292 0.90590 0.88793 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.92 37.16 0.37 -0.54 16 2 C -0.09 -0.72 6.66 37.16 0.25 -0.47 16 3 S -0.27 -2.91 21.74 -107.50 -2.34 -5.25 16 4 C -0.06 -0.72 5.95 37.16 0.22 -0.50 16 5 C -0.08 -1.09 5.95 37.16 0.22 -0.87 16 6 S -0.27 -4.60 21.72 -107.50 -2.33 -6.94 16 7 C 0.00 0.02 6.06 36.00 0.22 0.24 16 8 C -0.21 -4.60 5.16 -104.33 -0.54 -5.14 16 9 C -0.08 -1.80 9.67 -39.66 -0.38 -2.19 16 10 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 11 C 0.12 3.07 5.57 -106.83 -0.60 2.48 16 12 C -0.46 -11.85 9.05 -37.74 -0.34 -12.19 16 13 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 14 C 0.07 1.83 5.14 -17.34 -0.09 1.75 16 15 N -0.78 -20.01 10.95 55.55 0.61 -19.40 16 16 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 17 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 18 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 20 C -0.23 -5.56 9.80 -38.88 -0.38 -5.94 16 21 C -0.07 -1.47 9.67 -39.66 -0.38 -1.86 16 22 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 25 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 26 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 29 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 30 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 31 H 0.07 1.17 8.08 -51.92 -0.42 0.75 16 32 H 0.07 1.14 8.08 -51.92 -0.42 0.72 16 33 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 34 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 35 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 36 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 37 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 338.59 15.07 5.10 5.10 Total: -1.00 -26.78 338.59 -11.55 -38.33 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.78 Total: 4.84 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: -1.77 Total: -29.90 kcal Atomic # 7 Polarization: -20.01 SS G_CDS: 0.61 Total: -19.40 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Atomic # 16 Polarization: -7.52 SS G_CDS: -4.67 Total: -12.19 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -26.78 -11.55 -38.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760511749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.741 kcal (2) G-P(sol) polarization free energy of solvation -26.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds