Wall clock time and date at job start Tue Mar 31 2020 05:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31302 * 120.26830 * 2 1 4 4 N 1.28485 * 121.47072 * 180.29187 * 3 2 1 5 5 C 1.32238 * 122.00033 * 359.72461 * 4 3 2 6 6 S 1.76201 * 119.81380 * 179.97438 * 5 4 3 7 7 N 1.36548 * 120.37426 * 359.97181 * 5 4 3 8 8 N 1.40097 * 120.73987 * 180.02562 * 7 5 4 9 9 C 1.28023 * 120.00038 * 246.14128 * 8 7 5 10 10 C 1.50698 * 119.99940 * 185.16264 * 9 8 7 11 11 H 1.09004 * 109.47131 * 359.97438 * 10 9 8 12 12 C 1.52999 * 109.47271 * 119.99883 * 10 9 8 13 13 C 1.53004 * 109.47090 * 239.99666 * 10 9 8 14 14 C 1.50703 * 109.47310 * 175.00094 * 13 10 9 15 15 H 1.08002 * 119.99497 * 359.97438 * 14 13 10 16 16 C 1.37871 * 119.99966 * 180.02562 * 14 13 10 17 17 N 1.31521 * 119.99939 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00091 * 359.97438 * 16 14 13 19 19 H 1.48509 * 109.46637 * 90.00606 * 18 16 14 20 20 H 1.48503 * 109.47071 * 210.00284 * 18 16 14 21 21 H 1.48496 * 109.47558 * 330.00530 * 18 16 14 22 22 C 1.35289 * 118.52176 * 0.02587 * 7 5 4 23 23 O 1.21986 * 120.91341 * 179.97438 * 22 7 5 24 24 H 1.09008 * 109.46731 * 270.26573 * 1 2 3 25 25 H 1.08996 * 109.47264 * 30.26370 * 1 2 3 26 26 H 1.09000 * 109.47336 * 150.26955 * 1 2 3 27 27 H 1.40993 * 99.99852 * 359.97306 * 6 5 4 28 28 H 1.08004 * 120.00209 * 5.15728 * 9 8 7 29 29 H 1.09001 * 109.46796 * 299.99367 * 12 10 9 30 30 H 1.08994 * 109.47598 * 59.99699 * 12 10 9 31 31 H 1.09002 * 109.47247 * 179.97438 * 12 10 9 32 32 H 1.08999 * 109.46994 * 295.00037 * 13 10 9 33 33 H 1.09000 * 109.47108 * 54.99970 * 13 10 9 34 34 H 0.96998 * 119.99779 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1688 1.1340 0.0000 4 7 3.4534 1.1610 -0.0056 5 6 4.1775 0.0545 -0.0062 6 16 5.9365 0.1587 -0.0147 7 7 3.5699 -1.1683 -0.0003 8 7 4.3296 -2.3454 -0.0004 9 6 4.2956 -3.1292 -1.0121 10 6 5.0193 -4.4502 -0.9665 11 1 5.5107 -4.5621 0.0000 12 6 4.0162 -5.5884 -1.1641 13 6 6.0681 -4.4958 -2.0797 14 6 6.8743 -5.7633 -1.9587 15 1 6.6604 -6.4658 -1.1668 16 6 7.8857 -6.0255 -2.8583 17 7 8.5889 -7.1319 -2.7530 18 14 8.2561 -4.8100 -4.2276 19 1 9.2662 -3.8279 -3.7577 20 1 8.7865 -5.5398 -5.4072 21 1 7.0103 -4.0961 -4.6063 22 6 2.2180 -1.2179 0.0057 23 8 1.6300 -2.2867 0.0106 24 1 -0.3633 0.0048 1.0278 25 1 -0.3633 0.8876 -0.5179 26 1 -0.3634 -0.8924 -0.5096 27 1 6.0987 1.5592 -0.0196 28 1 3.7481 -2.8437 -1.8982 29 1 3.2692 -5.5560 -0.3710 30 1 3.5251 -5.4764 -2.1306 31 1 4.5398 -6.5439 -1.1316 32 1 5.5702 -4.4730 -3.0490 33 1 6.7299 -3.6343 -1.9908 34 1 9.3002 -7.3165 -3.3862 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765994285.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:09 Heat of formation + Delta-G solvation = 69.865227 kcal Electronic energy + Delta-G solvation = -19478.478639 eV Core-core repulsion = 16347.220446 eV Total energy + Delta-G solvation = -3131.258193 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.28198 -38.69867 -37.72783 -35.83621 -33.42948 -32.70570 -31.64103 -29.09098 -27.78105 -25.90321 -24.66571 -23.82165 -21.75073 -20.19054 -19.50520 -19.01144 -18.00985 -17.09441 -16.66471 -16.49338 -14.89191 -14.74929 -14.41542 -14.28506 -13.93948 -13.62947 -13.49024 -12.97968 -12.86034 -12.66723 -12.36674 -12.21167 -11.80202 -11.53867 -11.30285 -11.15573 -11.05237 -10.89385 -10.72977 -10.25687 -9.93574 -9.89197 -9.80415 -9.31584 -9.23595 -8.65073 -8.44868 -6.14975 -4.14849 -0.06688 0.42066 1.08922 1.38916 1.64203 1.89623 3.00517 3.22832 3.31343 3.31739 3.56309 3.84484 4.34522 4.39197 4.63679 4.72287 4.96859 5.17877 5.33431 5.48270 5.52919 5.66494 5.74734 5.78597 5.82971 6.13224 6.40345 6.54570 6.78633 6.88626 6.95292 7.13245 7.53606 7.61165 8.16047 8.38608 8.88262 9.45515 10.97693 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.021895 B = 0.004609 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.521187 B = 6073.160413 C = 6878.918796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.004 3.996 3 N -0.181 5.181 4 N -0.345 5.345 5 C 0.333 3.667 6 S 0.043 5.957 7 N -0.368 5.368 8 N -0.290 5.290 9 C 0.201 3.799 10 C -0.041 4.041 11 H 0.096 0.904 12 C -0.130 4.130 13 C -0.003 4.003 14 C -0.519 4.519 15 H 0.079 0.921 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.875 3.125 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.266 1.266 22 C 0.493 3.507 23 O -0.499 6.499 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.128 0.872 28 H 0.112 0.888 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.023 0.977 33 H 0.019 0.981 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.455 14.701 3.652 18.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.173 4.173 3 N -0.017 5.017 4 N -0.194 5.194 5 C -0.038 4.038 6 S 0.200 5.800 7 N -0.174 5.174 8 N -0.090 5.090 9 C -0.009 4.009 10 C -0.062 4.062 11 H 0.114 0.886 12 C -0.188 4.188 13 C -0.042 4.042 14 C -0.557 4.557 15 H 0.097 0.903 16 C -0.130 4.130 17 N -0.536 5.536 18 Si 0.702 3.298 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.191 1.191 22 C 0.283 3.717 23 O -0.368 6.368 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.092 0.908 28 H 0.129 0.871 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.393 15.500 4.467 18.667 hybrid contribution -0.853 0.206 -1.463 1.706 sum -10.246 15.706 3.004 18.992 Atomic orbital electron populations 1.20467 0.85179 1.04363 1.03906 1.24388 1.00386 0.87607 1.04873 1.72056 1.00631 1.25304 1.03692 1.74069 1.00464 1.18237 1.26652 1.26887 1.01574 0.83518 0.91866 1.87994 0.89478 1.13759 1.88793 1.48038 1.07077 1.05032 1.57300 1.75636 1.14767 0.93839 1.24790 1.27761 0.86931 0.94356 0.91872 1.20528 0.96150 0.85550 1.03996 0.88601 1.21703 0.97532 0.98919 1.00662 1.19654 0.93151 0.98712 0.92667 1.20943 1.15757 1.03922 1.15113 0.90305 1.24959 0.95603 0.95094 0.97387 1.69891 1.21694 1.24732 1.37252 0.86866 0.79082 0.81669 0.82192 1.20104 1.21266 1.19093 1.18343 0.80633 0.92657 0.80030 1.91011 1.66131 1.30820 1.48831 0.89645 0.89537 0.89499 0.90842 0.87052 0.93736 0.92830 0.89424 0.95849 0.96298 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.01 36.01 0.36 -0.40 16 2 C 0.00 0.05 6.92 -81.76 -0.57 -0.52 16 3 N -0.18 -2.55 11.45 33.97 0.39 -2.16 16 4 N -0.34 -4.89 11.46 30.84 0.35 -4.54 16 5 C 0.33 4.67 8.02 -87.52 -0.70 3.97 16 6 S 0.04 0.49 25.36 -107.50 -2.73 -2.23 16 7 N -0.37 -5.78 3.26 -14.46 -0.05 -5.83 16 8 N -0.29 -4.77 10.10 32.67 0.33 -4.44 16 9 C 0.20 3.23 8.90 -13.87 -0.12 3.11 16 10 C -0.04 -0.72 2.75 -91.77 -0.25 -0.97 16 11 H 0.10 1.74 8.11 -51.93 -0.42 1.32 16 12 C -0.13 -2.14 8.99 37.16 0.33 -1.80 16 13 C 0.00 -0.07 3.50 -27.88 -0.10 -0.17 16 14 C -0.52 -13.30 8.96 -34.44 -0.31 -13.61 16 15 H 0.08 2.16 7.30 -52.49 -0.38 1.78 16 16 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 17 N -0.90 -26.05 13.96 55.43 0.77 -25.27 16 18 Si 0.87 20.17 27.47 -169.99 -4.67 15.50 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.27 -5.82 6.54 56.52 0.37 -5.45 16 22 C 0.49 7.78 7.38 -14.97 -0.11 7.67 16 23 O -0.50 -8.81 16.25 4.93 0.08 -8.73 16 24 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 0.83 7.66 -51.93 -0.40 0.43 16 27 H 0.13 1.03 9.53 96.90 0.92 1.96 16 28 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.57 6.95 -51.93 -0.36 1.21 16 32 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 33 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 314.21 15.07 4.74 4.74 Total: -1.00 -30.29 314.21 -5.03 -35.32 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -2.69 Total: -1.47 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.56 Total: -0.90 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 1.80 Total: -42.23 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.08 Total: -8.73 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.67 Total: 15.50 kcal Atomic # 16 Polarization: 0.49 SS G_CDS: -2.73 Total: -2.23 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.29 -5.03 -35.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765994285.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.188 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds