Wall clock time and date at job start Tue Mar 31 2020 06:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99647 * 2 1 4 4 H 1.48495 * 109.47197 * 239.99848 * 3 2 1 5 5 H 1.48502 * 109.47361 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46765 * 120.00431 * 3 2 1 7 7 C 1.37879 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99873 * 173.56065 * 7 2 1 9 9 C 1.50692 * 119.99934 * 353.56337 * 7 2 1 10 10 C 1.53004 * 115.55352 * 85.40862 * 9 7 2 11 11 N 1.46502 * 109.46739 * 65.12262 * 10 9 7 12 12 C 1.34780 * 119.99925 * 178.21159 * 11 10 9 13 13 O 1.21585 * 119.99694 * 0.28483 * 12 11 10 14 14 N 1.34770 * 120.00251 * 180.27750 * 12 11 10 15 15 O 1.41604 * 120.00171 * 180.02562 * 14 12 11 16 16 C 1.42903 * 113.99801 * 179.97438 * 15 14 12 17 17 C 1.53003 * 109.46715 * 179.97438 * 16 15 14 18 18 F 1.39903 * 109.46772 * 60.00329 * 17 16 15 19 19 F 1.39901 * 109.46797 * 179.97438 * 17 16 15 20 20 F 1.39896 * 109.47620 * 300.00159 * 17 16 15 21 21 C 1.53008 * 117.50068 * 231.07911 * 9 7 2 22 22 C 1.53002 * 117.49936 * 299.73732 * 9 7 2 23 23 H 0.97003 * 120.00760 * 5.06087 * 1 2 3 24 24 H 1.08999 * 109.47098 * 305.12825 * 10 9 7 25 25 H 1.08996 * 109.47594 * 185.12460 * 10 9 7 26 26 H 0.96998 * 120.00409 * 358.49546 * 11 10 9 27 27 H 0.97007 * 120.00027 * 0.02562 * 14 12 11 28 28 H 1.08994 * 109.47123 * 300.00137 * 16 15 14 29 29 H 1.09006 * 109.46968 * 60.00376 * 16 15 14 30 30 H 1.08996 * 117.50090 * 215.00296 * 21 9 7 31 31 H 1.08999 * 117.49010 * 0.02562 * 21 9 7 32 32 H 1.08996 * 117.49775 * 359.97438 * 22 9 7 33 33 H 1.09005 * 117.49534 * 144.97434 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0794 -1.1969 -0.1054 9 6 1.2582 -2.4950 0.1452 10 6 0.7024 -3.0859 -1.1521 11 7 1.8116 -3.4578 -2.0339 12 6 1.5608 -4.0353 -3.2255 13 8 0.4136 -4.2429 -3.5709 14 7 2.5814 -4.3825 -4.0343 15 8 2.3178 -4.9887 -5.2866 16 6 3.4915 -5.3027 -6.0389 17 6 3.0889 -5.9502 -7.3654 18 9 2.2912 -5.0619 -8.0947 19 9 4.2379 -6.2570 -8.1021 20 9 2.3695 -7.1231 -7.1125 21 6 1.7469 -3.4739 1.2148 22 6 0.4416 -2.7018 1.4224 23 1 -0.4851 0.8367 -0.0741 24 1 0.0755 -2.3456 -1.6492 25 1 0.1080 -3.9704 -0.9231 26 1 2.7268 -3.2921 -1.7583 27 1 3.4966 -4.2171 -3.7586 28 1 4.0522 -4.3889 -6.2356 29 1 4.1128 -5.9951 -5.4708 30 1 1.6725 -4.5388 0.9943 31 1 2.6080 -3.1766 1.8133 32 1 0.4445 -1.8970 2.1574 33 1 -0.4919 -3.2584 1.3383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797481679.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:04 Heat of formation + Delta-G solvation = -147.137873 kcal Electronic energy + Delta-G solvation = -21926.200154 eV Core-core repulsion = 17768.629638 eV Total energy + Delta-G solvation = -4157.570516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.098 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.44643 -48.01285 -47.87716 -39.50212 -37.74616 -36.62259 -33.49489 -32.27967 -31.98425 -29.39092 -26.15527 -25.07246 -23.72457 -21.34158 -20.79711 -19.52390 -19.27940 -18.95521 -18.47495 -17.76952 -17.37612 -16.08015 -15.96386 -14.95332 -14.89241 -14.70725 -14.69851 -14.44488 -14.32917 -14.14167 -14.04747 -14.04500 -13.59636 -13.30520 -12.74210 -12.25615 -12.09544 -11.65375 -11.49616 -11.03836 -10.96669 -10.58660 -10.31473 -9.89901 -9.61428 -9.06186 -8.99976 -8.54250 -8.35807 -8.13427 -6.11720 -4.21231 1.23074 2.47150 3.23645 3.30604 3.31183 3.34357 3.55736 3.58074 3.63208 4.28757 4.31326 4.42784 4.54002 4.67808 5.16194 5.28925 5.95111 6.28517 6.39131 6.50995 6.56859 6.65120 6.72936 7.01534 7.08163 7.25980 7.38310 7.46451 7.76762 8.28378 8.40661 8.79232 9.00408 9.46037 10.96002 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.024858 B = 0.003487 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.147158 B = 8027.603765 C = 8577.544895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.075 3.925 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.504 4.504 8 H 0.060 0.940 9 C 0.027 3.973 10 C 0.183 3.817 11 N -0.706 5.706 12 C 0.715 3.285 13 O -0.577 6.577 14 N -0.614 5.614 15 O -0.116 6.116 16 C -0.015 4.015 17 C 0.473 3.527 18 F -0.171 7.171 19 F -0.172 7.172 20 F -0.171 7.171 21 C -0.210 4.210 22 C -0.145 4.145 23 H 0.263 0.737 24 H 0.074 0.926 25 H 0.039 0.961 26 H 0.398 0.602 27 H 0.405 0.595 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.066 -9.841 -9.822 17.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.026 3.974 10 C 0.061 3.939 11 N -0.363 5.363 12 C 0.415 3.585 13 O -0.453 6.453 14 N -0.322 5.322 15 O -0.118 6.118 16 C -0.095 4.095 17 C 0.417 3.583 18 F -0.152 7.152 19 F -0.154 7.154 20 F -0.153 7.153 21 C -0.248 4.248 22 C -0.184 4.184 23 H 0.073 0.927 24 H 0.092 0.908 25 H 0.058 0.942 26 H 0.232 0.768 27 H 0.245 0.755 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.563 -9.949 -10.175 16.608 hybrid contribution 1.544 0.974 -0.163 1.833 sum 10.107 -8.975 -10.338 17.017 Atomic orbital electron populations 1.69952 1.05902 1.27181 1.47787 1.24985 0.94798 0.98956 0.94214 0.86689 0.79656 0.83215 0.78570 1.20306 1.21253 1.20206 1.20278 0.92762 0.88581 1.52515 0.92233 1.19031 0.98845 0.93940 0.85584 1.21003 0.86134 0.97042 0.89739 1.45008 1.11919 1.63549 1.15837 1.15544 0.83502 0.79126 0.80292 1.90933 1.19238 1.60576 1.74503 1.46303 1.09008 1.67790 1.09109 1.90615 1.21650 1.79817 1.19748 1.23949 0.91756 1.03311 0.90498 1.19759 0.75080 0.77265 0.86150 1.93264 1.74444 1.67910 1.79569 1.93228 1.50037 1.93338 1.78777 1.93255 1.78553 1.49392 1.94060 1.23038 0.98720 0.95694 1.07326 1.22502 0.92362 1.01078 1.02423 0.92671 0.90756 0.94236 0.76803 0.75469 0.87349 0.87433 0.91538 0.90330 0.89733 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.61 12.91 55.43 0.72 -22.89 16 2 C 0.08 1.93 5.39 -17.82 -0.10 1.83 16 3 Si 0.89 19.93 29.55 -169.99 -5.02 14.91 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.50 -12.37 8.63 -34.44 -0.30 -12.67 16 8 H 0.06 1.42 7.82 -52.49 -0.41 1.01 16 9 C 0.03 0.60 1.38 -155.66 -0.21 0.39 16 10 C 0.18 4.01 5.50 -4.04 -0.02 3.99 16 11 N -0.71 -12.94 5.48 -65.22 -0.36 -13.30 16 12 C 0.71 13.51 8.71 -86.92 -0.76 12.75 16 13 O -0.58 -13.73 16.75 -12.86 -0.22 -13.95 16 14 N -0.61 -8.52 6.39 27.63 0.18 -8.35 16 15 O -0.12 -1.63 11.00 -29.62 -0.33 -1.95 16 16 C -0.02 -0.13 6.19 37.16 0.23 0.10 16 17 C 0.47 4.58 3.32 37.16 0.12 4.71 16 18 F -0.17 -2.00 17.26 2.25 0.04 -1.97 16 19 F -0.17 -1.48 17.32 2.25 0.04 -1.44 16 20 F -0.17 -1.96 17.26 2.25 0.04 -1.92 16 21 C -0.21 -4.13 9.96 -26.69 -0.27 -4.40 16 22 C -0.15 -3.19 9.42 -26.69 -0.25 -3.44 16 23 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 24 H 0.07 1.88 8.14 -51.93 -0.42 1.46 16 25 H 0.04 0.86 8.09 -51.93 -0.42 0.43 16 26 H 0.40 6.27 8.38 -40.82 -0.34 5.93 16 27 H 0.41 3.77 8.56 -40.82 -0.35 3.42 16 28 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.08 1.98 8.14 -51.93 -0.42 1.55 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 311.89 15.07 4.70 4.70 Total: -1.00 -31.50 311.89 -5.38 -36.88 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -3.62 Total: 6.00 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -1.55 Total: 3.27 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.54 Total: -44.54 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.54 Total: -15.90 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 0.12 Total: -5.33 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.50 -5.38 -36.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797481679.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.254 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds