Wall clock time and date at job start Tue Mar 31 2020 06:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36008 * 116.99960 * 2 1 4 4 C 1.35529 * 120.48184 * 359.72301 * 3 2 1 5 5 O 1.33823 * 121.02149 * 179.69531 * 4 3 2 6 6 C 1.34310 * 122.04308 * 0.61491 * 5 4 3 7 7 C 1.47946 * 119.57683 * 179.69526 * 6 5 4 8 8 O 1.21427 * 119.99836 * 179.97438 * 7 6 5 9 9 O 1.34715 * 119.99686 * 359.97438 * 7 6 5 10 10 C 1.45201 * 116.99576 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46834 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46720 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46830 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00292 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00252 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99473 * 0.02562 * 15 13 12 17 17 Si 1.86789 * 120.00355 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47316 * 60.00265 * 17 15 13 19 19 H 1.48503 * 109.47570 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47632 * 300.00243 * 17 15 13 21 21 C 1.35836 * 120.84475 * 359.67124 * 6 5 4 22 22 C 1.41996 * 120.48437 * 179.97438 * 3 2 1 23 23 O 1.22121 * 120.92009 * 0.02562 * 22 3 2 24 24 H 1.09001 * 109.47103 * 60.00643 * 1 2 3 25 25 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47187 * 300.00203 * 1 2 3 27 27 H 1.07999 * 119.48589 * 359.97438 * 4 3 2 28 28 H 1.08998 * 109.47513 * 300.00001 * 10 9 7 29 29 H 1.09002 * 109.47049 * 60.00183 * 10 9 7 30 30 H 1.08987 * 109.47581 * 299.99995 * 11 10 9 31 31 H 1.09002 * 109.46807 * 60.00459 * 11 10 9 32 32 H 1.08992 * 109.47480 * 299.99997 * 12 11 10 33 33 H 1.09002 * 109.47051 * 60.00675 * 12 11 10 34 34 H 0.97003 * 119.99904 * 180.02562 * 16 15 13 35 35 H 1.08003 * 120.55162 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3180 2.3546 -0.0056 5 8 1.9142 3.5527 0.0004 6 6 3.2509 3.6834 0.0000 7 6 3.8525 5.0351 0.0000 8 8 5.0601 5.1621 0.0002 9 8 3.0604 6.1248 -0.0001 10 6 3.7195 7.4186 0.0005 11 6 2.6655 8.5277 -0.0004 12 6 3.3600 9.8911 0.0009 13 6 2.3219 10.9835 0.0007 14 1 1.2719 10.7308 0.0002 15 6 2.7126 12.3058 0.0023 16 7 3.9912 12.6136 0.0034 17 14 1.4260 13.6599 0.0013 18 1 0.5756 13.5358 1.2124 19 1 2.0999 14.9832 0.0026 20 1 0.5793 13.5375 -1.2126 21 6 4.0576 2.5905 0.0001 22 6 3.4638 1.2982 0.0005 23 8 4.1539 0.2906 0.0006 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2395 2.2975 -0.0106 28 1 4.3418 7.5090 0.8908 29 1 4.3426 7.5093 -0.8892 30 1 2.0436 8.4373 -0.8907 31 1 2.0421 8.4371 0.8892 32 1 3.9817 9.9814 0.8916 33 1 3.9837 9.9819 -0.8883 34 1 4.2661 13.5439 0.0049 35 1 5.1319 2.7011 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798670864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:04 Heat of formation + Delta-G solvation = -151.579306 kcal Electronic energy + Delta-G solvation = -20860.976617 eV Core-core repulsion = 17212.777496 eV Total energy + Delta-G solvation = -3648.199122 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.54122 -40.49665 -39.58016 -38.52393 -36.95352 -34.11995 -33.08926 -32.06395 -31.62588 -28.36056 -27.51070 -25.76570 -24.37696 -23.37425 -21.74492 -20.50275 -19.48419 -19.24715 -18.12790 -17.38271 -17.23597 -16.50932 -16.41830 -16.13145 -15.72565 -15.41115 -15.20078 -14.73952 -14.52853 -14.37977 -14.20424 -13.57264 -13.11811 -12.40587 -12.28859 -12.06126 -12.04913 -11.97902 -11.20134 -11.03827 -10.77468 -10.66727 -10.60733 -10.30729 -10.23184 -9.84474 -9.61007 -9.25265 -8.72199 -8.44156 -6.09078 -4.12565 -0.14282 0.49218 1.51840 2.10955 2.41294 2.55665 2.95489 3.28629 3.33500 3.35506 3.75642 3.90435 4.20055 4.40269 4.44215 4.59697 4.65163 4.81492 4.94145 5.00139 5.26957 5.36745 5.39915 5.48167 5.82981 6.07182 6.41232 6.41276 6.49967 6.62581 6.86180 7.19780 7.37604 7.52388 7.62419 7.88408 8.28656 8.93276 9.52082 11.02276 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.034728 B = 0.002662 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.064171 B =10514.582762 C =11289.595073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.282 6.282 3 C -0.055 4.055 4 C 0.002 3.998 5 O -0.178 6.178 6 C 0.118 3.882 7 C 0.520 3.480 8 O -0.466 6.466 9 O -0.336 6.336 10 C 0.065 3.935 11 C -0.109 4.109 12 C 0.025 3.975 13 C -0.524 4.524 14 H 0.057 0.943 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.222 4.222 22 C 0.410 3.590 23 O -0.454 6.454 24 H 0.060 0.940 25 H 0.109 0.891 26 H 0.060 0.940 27 H 0.207 0.793 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.263 0.737 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.468 -22.142 -0.016 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.195 6.195 3 C -0.102 4.102 4 C -0.064 4.064 5 O -0.079 6.079 6 C 0.068 3.932 7 C 0.361 3.639 8 O -0.354 6.354 9 O -0.251 6.251 10 C -0.007 4.007 11 C -0.147 4.147 12 C -0.013 4.013 13 C -0.562 4.562 14 H 0.076 0.924 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.242 4.242 22 C 0.296 3.704 23 O -0.337 6.337 24 H 0.078 0.922 25 H 0.127 0.873 26 H 0.078 0.922 27 H 0.223 0.777 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.072 0.928 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -6.690 -22.387 -0.016 23.366 hybrid contribution -0.834 0.875 0.000 1.208 sum -7.524 -21.513 -0.016 22.790 Atomic orbital electron populations 1.23265 0.78229 1.05200 1.01530 1.86287 1.21079 1.23484 1.88690 1.20995 0.95267 0.86133 1.07811 1.24053 0.98445 0.80922 1.02956 1.83060 1.19447 1.30509 1.74931 1.21313 0.80873 0.93157 0.97847 1.20052 0.85047 0.84072 0.74696 1.90957 1.14051 1.85995 1.44355 1.86662 1.40664 1.15830 1.81966 1.23787 0.97304 0.76738 1.02875 1.21809 0.97076 0.93515 1.02305 1.19056 0.96099 0.88303 0.97802 1.21114 0.92955 0.90757 1.51390 0.92437 1.25025 0.95363 0.98919 0.95107 1.69948 1.14577 1.18502 1.50258 0.86595 0.81470 0.80894 0.78680 1.20161 1.21239 1.20164 1.23263 1.03778 0.90822 1.06386 1.16992 0.86329 0.89568 0.77518 1.90861 1.65061 1.37724 1.40050 0.92155 0.87315 0.92151 0.77709 0.90724 0.90730 0.91871 0.91876 0.96127 0.96127 0.92761 0.80048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.82 101.05 0.99 1.04 16 2 O -0.28 -2.70 10.35 -35.02 -0.36 -3.06 16 3 C -0.05 -0.54 6.72 -39.11 -0.26 -0.80 16 4 C 0.00 0.02 10.43 29.76 0.31 0.33 16 5 O -0.18 -1.73 9.60 -3.39 -0.03 -1.76 16 6 C 0.12 1.32 6.90 -36.47 -0.25 1.06 16 7 C 0.52 7.07 7.94 34.71 0.28 7.35 16 8 O -0.47 -7.20 16.05 -19.21 -0.31 -7.51 16 9 O -0.34 -5.00 10.09 -44.91 -0.45 -5.45 16 10 C 0.07 1.07 5.48 37.16 0.20 1.28 16 11 C -0.11 -2.10 5.53 -26.73 -0.15 -2.25 16 12 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 13 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 14 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 17 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 C -0.22 -2.46 9.56 -38.91 -0.37 -2.83 16 22 C 0.41 5.05 6.82 -36.62 -0.25 4.80 16 23 O -0.45 -7.10 17.74 -10.44 -0.19 -7.29 16 24 H 0.06 0.16 7.65 -51.93 -0.40 -0.24 16 25 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.16 7.68 -51.93 -0.40 -0.24 16 27 H 0.21 0.68 6.21 -52.49 -0.33 0.35 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.18 8.14 -51.94 -0.42 0.76 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.18 1.93 7.56 -52.48 -0.40 1.53 16 LS Contribution 318.86 15.07 4.81 4.81 Total: -1.00 -32.98 318.86 -4.89 -37.87 By element: Atomic # 1 Polarization: -1.56 SS G_CDS: -4.02 Total: -5.58 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -0.05 Total: -2.61 kcal Atomic # 7 Polarization: -26.15 SS G_CDS: 0.74 Total: -25.42 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -1.34 Total: -25.07 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.98 -4.89 -37.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798670864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.708 kcal (2) G-P(sol) polarization free energy of solvation -32.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds