Wall clock time and date at job start Tue Mar 31 2020 06:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34769 * 116.99561 * 2 1 4 4 O 1.21536 * 120.00486 * 359.97438 * 3 2 1 5 5 C 1.47236 * 119.99754 * 179.97438 * 3 2 1 6 6 C 1.47058 * 127.20139 * 359.97438 * 5 3 2 7 7 C 1.34160 * 105.95011 * 180.02562 * 6 5 3 8 8 O 1.34217 * 109.14291 * 0.22965 * 7 6 5 9 9 C 1.33630 * 110.92458 * 359.60497 * 8 7 6 10 10 C 1.50696 * 125.80652 * 180.15861 * 9 8 7 11 11 O 1.45201 * 109.47525 * 270.27046 * 10 9 8 12 12 C 1.34228 * 117.00155 * 180.02562 * 11 10 9 13 13 O 1.20832 * 120.00118 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00110 * 179.97438 * 12 11 10 15 15 C 1.52993 * 109.47355 * 179.97438 * 14 12 11 16 16 C 1.50707 * 109.47207 * 179.97438 * 15 14 12 17 17 H 1.07991 * 119.99744 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99817 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99963 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99651 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47286 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47166 * 119.99971 * 20 18 16 23 23 H 1.48499 * 109.46901 * 239.99695 * 20 18 16 24 24 H 1.08996 * 109.47225 * 299.99918 * 1 2 3 25 25 H 1.09002 * 109.46960 * 60.00393 * 1 2 3 26 26 H 1.09005 * 109.46849 * 180.02562 * 1 2 3 27 27 H 1.07999 * 127.02759 * 359.97438 * 6 5 3 28 28 H 1.08002 * 125.42521 * 179.97438 * 7 6 5 29 29 H 1.09004 * 109.47340 * 30.26978 * 10 9 8 30 30 H 1.09006 * 109.47043 * 150.27252 * 10 9 8 31 31 H 1.09001 * 109.47184 * 300.00321 * 14 12 11 32 32 H 1.09001 * 109.47187 * 59.99730 * 14 12 11 33 33 H 1.08996 * 109.47380 * 299.99861 * 15 14 12 34 34 H 1.08996 * 109.47163 * 60.00270 * 15 14 12 35 35 H 0.96998 * 119.99761 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2201 -0.0005 5 6 3.5341 1.2780 0.0006 6 6 4.4834 0.1548 0.0017 7 6 5.7066 0.7059 0.0024 8 8 5.5870 2.0427 0.0069 9 6 4.3013 2.4069 0.0007 10 6 3.7861 3.8231 -0.0003 11 8 3.6196 4.2785 1.3684 12 6 3.1640 5.5289 1.5434 13 8 2.9131 6.2202 0.5846 14 6 2.9653 6.0706 2.9355 15 6 2.4432 7.5064 2.8545 16 6 2.2440 8.0478 4.2467 17 1 2.4670 7.4295 5.1036 18 6 1.7759 9.3322 4.4264 19 7 1.5037 10.0850 3.3829 20 14 1.5296 10.0035 6.1522 21 1 1.9060 8.9659 7.1454 22 1 2.3824 11.2042 6.3426 23 1 0.1040 10.3742 6.3403 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 4.2447 -0.8985 0.0027 28 1 6.6389 0.1606 0.0037 29 1 4.4987 4.4686 -0.5138 30 1 2.8259 3.8600 -0.5149 31 1 2.2435 5.4505 3.4671 32 1 3.9160 6.0596 3.4687 33 1 3.1653 8.1262 2.3231 34 1 1.4926 7.5177 2.3212 35 1 1.1748 10.9887 3.5094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812613920.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:42 Heat of formation + Delta-G solvation = -160.371293 kcal Electronic energy + Delta-G solvation = -21317.350122 eV Core-core repulsion = 17668.769751 eV Total energy + Delta-G solvation = -3648.580371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.98759 -40.31831 -39.93822 -36.70517 -36.19848 -33.57494 -33.41591 -31.67659 -30.95639 -28.41118 -26.96877 -25.62963 -23.86483 -22.23070 -21.77129 -20.15056 -19.85509 -18.44135 -17.48075 -17.19917 -16.75188 -16.46097 -16.27590 -16.07333 -15.95780 -15.31511 -14.47047 -14.41279 -13.87296 -13.51773 -13.45745 -13.24341 -12.90049 -12.37203 -12.28596 -12.25157 -12.03938 -11.19316 -11.00701 -10.97012 -10.88810 -10.61480 -10.38860 -10.25035 -10.03608 -9.97610 -9.62135 -9.17379 -9.06439 -8.36462 -6.00032 -4.04776 0.69687 1.63682 2.18382 2.56930 2.74018 2.81323 3.31236 3.32173 3.39783 3.43794 4.10523 4.38568 4.46467 4.53503 4.86433 4.89743 4.99282 5.15068 5.18985 5.26936 5.35497 5.40848 5.45276 5.60906 5.88327 6.11964 6.13347 6.20339 6.59266 6.61868 6.89783 7.54850 7.68441 7.75212 7.99632 8.23675 8.39761 9.02405 9.59176 11.11051 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.022621 B = 0.003340 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.514438 B = 8381.655373 C = 9009.004826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.353 6.353 3 C 0.536 3.464 4 O -0.495 6.495 5 C -0.207 4.207 6 C -0.173 4.173 7 C -0.028 4.028 8 O -0.160 6.160 9 C 0.090 3.910 10 C 0.133 3.867 11 O -0.357 6.357 12 C 0.462 3.538 13 O -0.500 6.500 14 C -0.101 4.101 15 C 0.032 3.968 16 C -0.527 4.527 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.896 3.104 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.102 0.898 27 H 0.166 0.834 28 H 0.215 0.785 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.546 -23.882 -8.130 25.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.381 3.619 4 O -0.383 6.383 5 C -0.209 4.209 6 C -0.192 4.192 7 C -0.094 4.094 8 O -0.055 6.055 9 C 0.037 3.963 10 C 0.059 3.941 11 O -0.276 6.276 12 C 0.306 3.694 13 O -0.386 6.386 14 C -0.138 4.138 15 C -0.005 4.005 16 C -0.566 4.566 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.723 3.277 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.121 0.879 27 H 0.184 0.816 28 H 0.231 0.769 29 H 0.110 0.890 30 H 0.137 0.863 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.413 -23.020 -8.502 25.130 hybrid contribution -0.411 0.151 0.716 0.839 sum 5.002 -22.869 -7.786 24.670 Atomic orbital electron populations 1.23318 0.75628 1.03746 1.03034 1.86531 1.23721 1.32210 1.84518 1.19914 0.87375 0.81684 0.72955 1.90925 1.66283 1.35694 1.45449 1.20222 0.90999 0.93693 1.16016 1.22911 0.90835 0.99756 1.05718 1.24046 1.00445 0.79425 1.05513 1.83832 1.26616 1.24898 1.70193 1.22255 0.80652 0.95215 0.98192 1.21269 1.02728 0.85859 0.84240 1.86601 1.78373 1.33890 1.28742 1.24836 0.72352 0.77719 0.94524 1.90649 1.46570 1.58167 1.43212 1.21798 1.03728 1.01146 0.87158 1.19046 0.97388 0.86469 0.97604 1.21188 1.44662 0.98718 0.91998 0.92231 1.25024 0.95370 0.96973 0.96986 1.70006 1.44602 1.08935 1.29214 0.86480 0.77791 0.78947 0.84437 1.19651 1.20969 1.20974 0.91487 0.91677 0.87933 0.81612 0.76861 0.89000 0.86341 0.88811 0.88813 0.95474 0.95450 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.57 101.05 1.07 1.37 16 2 O -0.35 -3.98 10.48 -40.68 -0.43 -4.41 16 3 C 0.54 7.36 7.95 34.39 0.27 7.63 16 4 O -0.49 -8.24 14.64 -19.29 -0.28 -8.52 16 5 C -0.21 -2.59 6.32 -103.30 -0.65 -3.24 16 6 C -0.17 -1.54 11.05 -37.44 -0.41 -1.95 16 7 C -0.03 -0.22 12.03 29.30 0.35 0.13 16 8 O -0.16 -1.81 10.52 7.70 0.08 -1.72 16 9 C 0.09 1.19 7.02 -34.94 -0.25 0.94 16 10 C 0.13 2.02 5.46 36.00 0.20 2.22 16 11 O -0.36 -6.42 10.20 -39.25 -0.40 -6.82 16 12 C 0.46 9.55 7.96 36.00 0.29 9.84 16 13 O -0.50 -11.71 15.73 -18.75 -0.30 -12.00 16 14 C -0.10 -2.13 5.75 -27.89 -0.16 -2.29 16 15 C 0.03 0.86 4.26 -27.88 -0.12 0.74 16 16 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 20 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 28 H 0.21 0.66 8.06 -52.49 -0.42 0.24 16 29 H 0.09 1.26 8.13 -51.93 -0.42 0.84 16 30 H 0.12 1.91 6.48 -51.93 -0.34 1.57 16 31 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 32 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 33 H 0.03 0.78 8.10 -51.93 -0.42 0.36 16 34 H 0.03 0.80 8.10 -51.93 -0.42 0.37 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 322.33 15.07 4.86 4.86 Total: -1.00 -35.29 322.33 -4.68 -39.96 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -4.10 Total: -3.18 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 0.18 Total: 1.73 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.74 Total: -26.50 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -1.32 Total: -33.48 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.29 -4.68 -39.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812613920.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.410 kcal (2) G-P(sol) polarization free energy of solvation -35.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds