Wall clock time and date at job start Tue Mar 31 2020 06:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34769 * 116.99561 * 2 1 4 4 O 1.21536 * 120.00486 * 359.97438 * 3 2 1 5 5 C 1.47236 * 119.99754 * 179.97438 * 3 2 1 6 6 C 1.47058 * 127.20139 * 359.97438 * 5 3 2 7 7 C 1.34160 * 105.95011 * 180.02562 * 6 5 3 8 8 O 1.34217 * 109.14291 * 0.22965 * 7 6 5 9 9 C 1.33630 * 110.92458 * 359.60497 * 8 7 6 10 10 C 1.50696 * 125.80652 * 180.15861 * 9 8 7 11 11 O 1.45201 * 109.47525 * 270.27046 * 10 9 8 12 12 C 1.34228 * 117.00155 * 180.02562 * 11 10 9 13 13 O 1.20832 * 120.00118 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00110 * 179.97438 * 12 11 10 15 15 C 1.52993 * 109.47355 * 179.97438 * 14 12 11 16 16 C 1.50707 * 109.47207 * 179.97438 * 15 14 12 17 17 H 1.07991 * 119.99744 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99817 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99963 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99651 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47286 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47166 * 119.99971 * 20 18 16 23 23 H 1.48499 * 109.46901 * 239.99695 * 20 18 16 24 24 H 1.08996 * 109.47225 * 299.99918 * 1 2 3 25 25 H 1.09002 * 109.46960 * 60.00393 * 1 2 3 26 26 H 1.09005 * 109.46849 * 180.02562 * 1 2 3 27 27 H 1.07999 * 127.02759 * 359.97438 * 6 5 3 28 28 H 1.08002 * 125.42521 * 179.97438 * 7 6 5 29 29 H 1.09004 * 109.47340 * 30.26978 * 10 9 8 30 30 H 1.09006 * 109.47043 * 150.27252 * 10 9 8 31 31 H 1.09001 * 109.47184 * 300.00321 * 14 12 11 32 32 H 1.09001 * 109.47187 * 59.99730 * 14 12 11 33 33 H 1.08996 * 109.47380 * 299.99861 * 15 14 12 34 34 H 1.08996 * 109.47163 * 60.00270 * 15 14 12 35 35 H 0.96998 * 119.99761 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2201 -0.0005 5 6 3.5341 1.2780 0.0006 6 6 4.4834 0.1548 0.0017 7 6 5.7066 0.7059 0.0024 8 8 5.5870 2.0427 0.0069 9 6 4.3013 2.4069 0.0007 10 6 3.7861 3.8231 -0.0003 11 8 3.6196 4.2785 1.3684 12 6 3.1640 5.5289 1.5434 13 8 2.9131 6.2202 0.5846 14 6 2.9653 6.0706 2.9355 15 6 2.4432 7.5064 2.8545 16 6 2.2440 8.0478 4.2467 17 1 2.4670 7.4295 5.1036 18 6 1.7759 9.3322 4.4264 19 7 1.5037 10.0850 3.3829 20 14 1.5296 10.0035 6.1522 21 1 1.9060 8.9659 7.1454 22 1 2.3824 11.2042 6.3426 23 1 0.1040 10.3742 6.3403 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 4.2447 -0.8985 0.0027 28 1 6.6389 0.1606 0.0037 29 1 4.4987 4.4686 -0.5138 30 1 2.8259 3.8600 -0.5149 31 1 2.2435 5.4505 3.4671 32 1 3.9160 6.0596 3.4687 33 1 3.1653 8.1262 2.3231 34 1 1.4926 7.5177 2.3212 35 1 1.1748 10.9887 3.5094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812613920.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:41 Heat of formation + Delta-G solvation = -182.887295 kcal Electronic energy + Delta-G solvation = -21318.326489 eV Core-core repulsion = 17668.769751 eV Total energy + Delta-G solvation = -3649.556738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.81722 -41.57253 -41.29367 -37.94851 -37.54969 -35.67248 -34.28705 -33.28561 -32.35841 -29.28121 -28.37006 -27.22781 -24.85973 -24.08663 -22.61670 -21.60743 -21.05555 -19.33810 -19.19981 -18.37432 -18.09783 -17.76739 -17.60862 -17.35598 -16.98955 -16.52291 -16.44188 -15.57682 -15.29358 -14.57290 -14.40992 -14.36290 -14.24505 -14.00852 -13.80967 -13.45590 -13.18262 -12.96032 -12.86166 -12.48820 -12.12760 -12.02765 -11.89560 -11.79096 -11.67693 -11.55482 -11.29436 -11.06288 -10.59207 -9.92417 -8.20469 -6.34444 -0.32520 0.91501 1.14403 1.26469 1.43457 1.44616 1.57629 1.60269 1.80401 2.07553 2.43486 3.13373 3.22589 3.50597 3.70414 3.83350 3.89229 4.11067 4.26922 4.29330 4.39263 4.41290 4.42409 4.48954 4.69670 4.77969 4.84274 5.17400 5.21595 5.27156 5.45672 5.53037 5.79512 5.81715 6.11685 6.54831 6.67492 6.83710 7.35746 8.92534 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.022621 B = 0.003340 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.514438 B = 8381.655373 C = 9009.004826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.348 6.348 3 C 0.533 3.467 4 O -0.536 6.536 5 C -0.216 4.216 6 C -0.178 4.178 7 C -0.005 4.005 8 O -0.167 6.167 9 C 0.062 3.938 10 C 0.131 3.869 11 O -0.351 6.351 12 C 0.470 3.530 13 O -0.537 6.537 14 C -0.092 4.092 15 C 0.038 3.962 16 C -0.544 4.544 17 H 0.078 0.922 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.976 3.024 21 H -0.254 1.254 22 H -0.279 1.279 23 H -0.281 1.281 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.142 0.858 27 H 0.194 0.806 28 H 0.266 0.734 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.121 0.879 33 H -0.006 1.006 34 H -0.011 1.011 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.911 -26.603 -6.648 28.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.263 6.263 3 C 0.380 3.620 4 O -0.427 6.427 5 C -0.219 4.219 6 C -0.196 4.196 7 C -0.070 4.070 8 O -0.062 6.062 9 C 0.009 3.991 10 C 0.058 3.942 11 O -0.269 6.269 12 C 0.315 3.685 13 O -0.426 6.426 14 C -0.129 4.129 15 C 0.000 4.000 16 C -0.582 4.582 17 H 0.096 0.904 18 C -0.202 4.202 19 N -0.575 5.575 20 Si 0.800 3.200 21 H -0.177 1.177 22 H -0.205 1.205 23 H -0.206 1.206 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.160 0.840 27 H 0.212 0.788 28 H 0.282 0.718 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.131 0.869 32 H 0.139 0.861 33 H 0.013 0.987 34 H 0.008 0.992 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.794 -25.803 -7.014 27.589 hybrid contribution -0.813 0.820 0.162 1.166 sum 5.981 -24.983 -6.852 26.587 Atomic orbital electron populations 1.23630 0.74080 1.06149 1.02561 1.86529 1.25229 1.30778 1.83805 1.20274 0.88042 0.81757 0.71974 1.90907 1.67286 1.37070 1.47467 1.20488 0.90823 0.95144 1.15409 1.23245 0.90095 1.00168 1.06094 1.25112 1.02053 0.77822 1.01978 1.83830 1.25351 1.26938 1.70069 1.21765 0.81831 0.94140 1.01370 1.21301 1.02619 0.87879 0.82410 1.86540 1.77459 1.32062 1.30852 1.24600 0.71729 0.78298 0.93878 1.90637 1.48287 1.59379 1.44261 1.21557 1.05303 0.97905 0.88138 1.18822 0.94835 0.89742 0.96559 1.21656 1.44338 0.99296 0.92865 0.90417 1.26114 0.94839 0.97425 1.01843 1.70170 1.45700 1.09484 1.32181 0.85234 0.77682 0.78433 0.78668 1.17698 1.20463 1.20639 0.92310 0.91911 0.84038 0.78846 0.71816 0.88016 0.87869 0.86898 0.86125 0.98749 0.99246 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.57 113.37 1.20 1.65 16 2 O -0.35 -7.47 10.48 -56.80 -0.60 -8.06 16 3 C 0.53 14.65 7.95 70.19 0.56 15.21 16 4 O -0.54 -18.58 14.64 19.72 0.29 -18.29 16 5 C -0.22 -5.21 6.32 -19.00 -0.12 -5.33 16 6 C -0.18 -2.59 11.05 23.65 0.26 -2.33 16 7 C 0.00 -0.05 12.03 66.89 0.80 0.75 16 8 O -0.17 -3.40 10.52 4.65 0.05 -3.35 16 9 C 0.06 1.61 7.02 25.28 0.18 1.78 16 10 C 0.13 4.12 5.46 71.23 0.39 4.51 16 11 O -0.35 -12.79 10.20 -51.40 -0.52 -13.32 16 12 C 0.47 19.96 7.96 71.24 0.57 20.53 16 13 O -0.54 -26.44 15.73 21.95 0.35 -26.10 16 14 C -0.09 -3.91 5.75 29.84 0.17 -3.73 16 15 C 0.04 2.10 4.26 29.85 0.13 2.23 16 16 C -0.54 -30.97 9.11 25.60 0.23 -30.73 16 17 H 0.08 4.05 7.74 -2.92 -0.02 4.03 16 18 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 19 N -0.94 -58.93 13.29 21.45 0.28 -58.65 16 20 Si 0.98 44.30 29.54 68.60 2.03 46.33 16 21 H -0.25 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.14 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.19 1.64 8.06 -2.91 -0.02 1.62 16 28 H 0.27 0.07 8.06 -2.91 -0.02 0.04 16 29 H 0.10 2.90 8.13 -2.38 -0.02 2.88 16 30 H 0.10 3.56 6.48 -2.38 -0.02 3.54 16 31 H 0.11 4.38 8.14 -2.39 -0.02 4.36 16 32 H 0.12 4.48 8.14 -2.39 -0.02 4.46 16 33 H -0.01 -0.36 8.10 -2.39 -0.02 -0.38 16 34 H -0.01 -0.68 8.10 -2.39 -0.02 -0.70 16 35 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -80.23 322.33 7.81 -72.41 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: 1.11 Total: 4.29 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 4.83 Total: 4.74 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 0.28 Total: -58.65 kcal Atomic # 8 Polarization: -68.68 SS G_CDS: -0.44 Total: -69.12 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -80.23 7.81 -72.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812613920.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.475 kcal (2) G-P(sol) polarization free energy of solvation -80.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds