Wall clock time and date at job start Tue Mar 31 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21337 * 119.99993 * 2 1 4 4 C 1.46450 * 120.00349 * 180.02562 * 2 1 3 5 5 C 1.37975 * 125.93395 * 180.02562 * 4 2 1 6 6 C 1.39945 * 106.73673 * 179.97438 * 5 4 2 7 7 C 1.36647 * 107.02243 * 0.25998 * 6 5 4 8 8 C 1.47272 * 125.66513 * 179.73370 * 7 6 5 9 9 O 1.21519 * 119.99865 * 0.02562 * 8 7 6 10 10 O 1.34807 * 120.00389 * 180.02562 * 8 7 6 11 11 C 1.45200 * 117.00223 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.46907 * 179.97438 * 11 10 8 13 13 O 1.42901 * 109.47546 * 64.99942 * 12 11 10 14 14 C 1.42896 * 114.00537 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47418 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00027 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00134 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99766 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99938 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47136 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47124 * 120.00085 * 19 17 15 22 22 H 1.48499 * 109.46968 * 239.99681 * 19 17 15 23 23 O 1.34478 * 108.67186 * 359.56991 * 7 6 5 24 24 H 1.08997 * 109.47147 * 239.99674 * 1 2 3 25 25 H 1.09001 * 109.47297 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47154 * 120.00182 * 1 2 3 27 27 H 1.08002 * 126.63044 * 359.95366 * 5 4 2 28 28 H 1.08002 * 126.48437 * 179.97438 * 6 5 4 29 29 H 1.09001 * 109.47018 * 299.99620 * 11 10 8 30 30 H 1.08996 * 109.47151 * 59.99579 * 11 10 8 31 31 H 1.09002 * 109.47029 * 184.99464 * 12 11 10 32 32 H 1.08997 * 109.47568 * 304.99697 * 12 11 10 33 33 H 1.08994 * 109.47063 * 300.00151 * 14 13 12 34 34 H 1.09006 * 109.46896 * 59.99928 * 14 13 12 35 35 H 0.97002 * 119.99373 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2393 -1.2682 -0.0006 5 6 3.6117 -1.4108 -0.0001 6 6 3.8741 -2.7854 -0.0004 7 6 2.6657 -3.4233 -0.0068 8 6 2.4649 -4.8823 -0.0149 9 8 3.4246 -5.6277 -0.0158 10 8 1.2165 -5.3909 -0.0214 11 6 1.0941 -6.8377 -0.0286 12 6 -0.3862 -7.2243 -0.0346 13 8 -0.9876 -6.7879 -1.2552 14 6 -2.3775 -7.1017 -1.3631 15 6 -2.9055 -6.5977 -2.6815 16 1 -2.2455 -6.0889 -3.3685 17 6 -4.2311 -6.7859 -3.0107 18 7 -5.0347 -7.4059 -2.1742 19 14 -4.8853 -6.1617 -4.6452 20 1 -3.7877 -5.5049 -5.3994 21 1 -5.4153 -7.3025 -5.4344 22 1 -5.9733 -5.1810 -4.4009 23 8 1.6902 -2.4977 -0.0010 24 1 -0.3633 -0.5139 0.8899 25 1 -0.3634 1.0277 0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 4.3422 -0.6153 0.0000 28 1 4.8474 -3.2534 -0.0005 29 1 1.5783 -7.2389 -0.9190 30 1 1.5727 -7.2473 0.8610 31 1 -0.4793 -8.3071 0.0495 32 1 -0.8891 -6.7499 0.8081 33 1 -2.5116 -8.1819 -1.3067 34 1 -2.9220 -6.6250 -0.5479 35 1 -5.9674 -7.5379 -2.4057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815238393.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:42 Heat of formation + Delta-G solvation = -152.294110 kcal Electronic energy + Delta-G solvation = -21018.266752 eV Core-core repulsion = 17370.036634 eV Total energy + Delta-G solvation = -3648.230118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.11147 -40.33744 -39.47303 -37.23027 -36.22522 -33.57247 -32.81613 -31.69920 -30.44060 -29.50009 -27.01538 -25.22139 -22.83349 -22.41060 -22.01932 -21.29222 -20.33437 -18.69509 -17.40056 -17.17119 -16.83055 -16.37709 -16.35890 -15.40176 -15.31075 -14.91856 -14.69627 -14.42101 -14.12167 -13.83695 -13.53227 -13.41507 -13.07323 -12.79266 -12.58016 -12.48836 -12.05612 -11.51936 -11.18224 -10.97484 -10.86821 -10.74753 -10.55345 -10.51623 -10.48585 -10.09460 -9.22537 -9.15552 -8.93128 -8.26154 -6.15515 -4.17200 0.00178 1.25707 1.88139 2.35307 2.58658 2.63056 3.26579 3.33324 3.39763 3.58678 4.28403 4.34898 4.41217 4.64409 4.68607 5.01952 5.03265 5.08644 5.13027 5.18205 5.21384 5.34354 5.36895 5.72195 5.74386 5.76711 5.83190 5.94726 6.24044 6.27298 6.93948 7.00400 7.35223 7.47720 7.74733 8.08250 8.47029 8.95491 9.47815 10.96073 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.003892 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.218639 B = 7192.669603 C = 8739.984407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.441 3.559 3 O -0.436 6.436 4 C -0.071 4.071 5 C -0.136 4.136 6 C -0.131 4.131 7 C -0.011 4.011 8 C 0.548 3.452 9 O -0.485 6.485 10 O -0.326 6.326 11 C 0.074 3.926 12 C 0.061 3.939 13 O -0.391 6.391 14 C 0.194 3.806 15 C -0.515 4.515 16 H 0.067 0.933 17 C 0.057 3.943 18 N -0.898 5.898 19 Si 0.908 3.092 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.282 1.282 23 O -0.121 6.121 24 H 0.102 0.898 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.171 0.829 28 H 0.173 0.827 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.007 0.993 34 H 0.008 0.992 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.599 9.858 7.436 19.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.318 3.682 3 O -0.311 6.311 4 C -0.124 4.124 5 C -0.156 4.156 6 C -0.150 4.150 7 C -0.064 4.064 8 C 0.391 3.609 9 O -0.375 6.375 10 O -0.241 6.241 11 C 0.001 3.999 12 C -0.017 4.017 13 O -0.311 6.311 14 C 0.120 3.880 15 C -0.553 4.553 16 H 0.085 0.915 17 C -0.144 4.144 18 N -0.538 5.538 19 Si 0.735 3.265 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.208 1.208 23 O -0.015 6.015 24 H 0.120 0.880 25 H 0.111 0.889 26 H 0.123 0.877 27 H 0.189 0.811 28 H 0.191 0.809 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.025 0.975 34 H 0.026 0.974 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.737 10.123 7.305 19.313 hybrid contribution -0.434 -0.212 -0.570 0.747 sum 14.303 9.910 6.735 18.659 Atomic orbital electron populations 1.22285 0.91435 1.05779 1.06051 1.21344 0.91934 0.83927 0.70969 1.90645 1.72389 1.31341 1.36709 1.23511 0.93393 0.85474 1.10011 1.22448 0.94641 0.96962 1.01511 1.21967 0.98361 0.92961 1.01729 1.21293 0.87135 0.87442 1.10566 1.19326 0.82550 0.85401 0.73621 1.90922 1.42227 1.58041 1.46270 1.86751 1.28010 1.26944 1.82396 1.23400 0.98294 0.75168 1.03061 1.22334 0.90347 0.98309 0.90700 1.87921 1.27527 1.80794 1.34876 1.20251 0.75067 0.95080 0.97591 1.21084 0.94637 1.37422 1.02183 0.91454 1.24943 0.96400 0.95237 0.97853 1.69969 1.05603 1.42102 1.36078 0.86282 0.78838 0.78553 0.82857 1.19460 1.20807 1.20781 1.84216 1.35058 1.13817 1.68405 0.87958 0.88925 0.87668 0.81132 0.80933 0.89914 0.89851 0.91549 0.93005 0.97545 0.97434 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.57 10.13 36.01 0.36 -1.21 16 2 C 0.44 4.49 7.23 -31.00 -0.22 4.27 16 3 O -0.44 -5.32 17.60 5.51 0.10 -5.22 16 4 C -0.07 -0.78 7.09 -36.37 -0.26 -1.04 16 5 C -0.14 -1.32 10.66 -39.04 -0.42 -1.74 16 6 C -0.13 -1.34 10.58 -39.52 -0.42 -1.76 16 7 C -0.01 -0.15 7.18 -36.49 -0.26 -0.41 16 8 C 0.55 8.03 7.96 34.40 0.27 8.30 16 9 O -0.48 -7.46 16.65 -19.28 -0.32 -7.78 16 10 O -0.33 -5.32 10.20 -44.67 -0.46 -5.77 16 11 C 0.07 1.10 5.86 37.16 0.22 1.31 16 12 C 0.06 1.06 6.33 37.16 0.24 1.29 16 13 O -0.39 -9.25 10.30 -38.80 -0.40 -9.65 16 14 C 0.19 5.21 5.69 36.00 0.20 5.41 16 15 C -0.52 -14.98 9.43 -34.44 -0.32 -15.31 16 16 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.43 13.29 55.43 0.74 -25.70 16 19 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 O -0.12 -1.56 10.55 3.99 0.04 -1.52 16 24 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 26 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 28 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 328.52 15.07 4.95 4.95 Total: -1.00 -33.33 328.52 -5.27 -38.60 By element: Atomic # 1 Polarization: -0.89 SS G_CDS: -4.19 Total: -5.08 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -0.70 Total: 0.65 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.74 Total: -25.70 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -1.04 Total: -29.95 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.33 -5.27 -38.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815238393.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.691 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds