Wall clock time and date at job start Tue Mar 31 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47398 * 2 1 4 4 C 1.37100 * 120.00121 * 264.75134 * 3 2 1 5 5 H 1.07995 * 119.99981 * 146.16848 * 4 3 2 6 6 C 1.38950 * 119.99543 * 326.16650 * 4 3 2 7 7 N 1.31416 * 120.00240 * 337.67024 * 6 4 3 8 8 Si 1.86803 * 119.99898 * 157.67921 * 6 4 3 9 9 H 1.48503 * 109.46996 * 89.99628 * 8 6 4 10 10 H 1.48499 * 109.47054 * 209.99398 * 8 6 4 11 11 H 1.48502 * 109.46744 * 329.99775 * 8 6 4 12 12 C 1.34781 * 119.99762 * 84.74806 * 3 2 1 13 13 O 1.21293 * 119.99445 * 180.02562 * 12 3 2 14 14 C 1.50697 * 120.00167 * 0.02562 * 12 3 2 15 15 C 1.52996 * 109.47228 * 180.02562 * 14 12 3 16 16 C 1.50697 * 109.47228 * 180.02562 * 15 14 12 17 17 C 1.38613 * 120.42369 * 99.97744 * 16 15 14 18 18 C 1.38672 * 118.43689 * 180.02562 * 17 16 15 19 19 C 1.38184 * 119.18966 * 0.02562 * 18 17 16 20 20 N 1.31881 * 120.78590 * 359.97438 * 19 18 17 21 21 C 1.31979 * 121.70260 * 359.97438 * 20 19 18 22 22 Cl 1.73597 * 119.63239 * 179.97438 * 21 20 19 23 23 H 1.09004 * 109.46734 * 60.00049 * 1 2 3 24 24 H 1.09004 * 109.46867 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46820 * 300.00192 * 1 2 3 26 26 H 1.09001 * 109.47288 * 239.99571 * 2 1 3 27 27 H 1.09004 * 109.46734 * 119.99951 * 2 1 3 28 28 H 0.96994 * 120.00036 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.47121 * 59.99895 * 14 12 3 30 30 H 1.09002 * 109.47216 * 300.00324 * 14 12 3 31 31 H 1.09003 * 109.47054 * 60.00018 * 15 14 12 32 32 H 1.09002 * 109.47128 * 300.00184 * 15 14 12 33 33 H 1.07997 * 120.78160 * 0.04730 * 17 16 15 34 34 H 1.07998 * 120.40181 * 180.02562 * 18 17 16 35 35 H 1.08005 * 119.60874 * 180.25466 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3494 1.9913 -1.1823 5 1 2.1816 3.0506 -1.3088 6 6 2.9006 1.2466 -2.2178 7 7 3.5053 0.1088 -1.9594 8 14 2.7823 1.8629 -3.9773 9 1 3.9646 2.7066 -4.2867 10 1 2.7441 0.7047 -4.9059 11 1 1.5444 2.6673 -4.1378 12 6 2.1423 2.0521 1.1624 13 8 2.5463 3.1958 1.1623 14 6 1.7791 1.3814 2.4620 15 6 2.0094 2.3544 3.6200 16 6 1.6467 1.6834 4.9197 17 6 2.6341 1.1536 5.7356 18 6 2.2541 0.5448 6.9221 19 6 0.9130 0.4860 7.2500 20 7 -0.0007 1.0006 6.4501 21 6 0.3240 1.5883 5.3138 22 17 -0.9229 2.2468 4.3013 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8904 -0.4109 -2.6822 29 1 2.4010 0.4971 2.6008 30 1 0.7297 1.0873 2.4382 31 1 1.3871 3.2384 3.4810 32 1 3.0586 2.6488 3.6439 33 1 3.6750 1.2139 5.4540 34 1 2.9971 0.1218 7.5818 35 1 0.6097 0.0171 8.1744 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823542339.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:56 Heat of formation + Delta-G solvation = -11.534290 kcal Electronic energy + Delta-G solvation = -19731.924149 eV Core-core repulsion = 16562.799750 eV Total energy + Delta-G solvation = -3169.124398 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.39830 -38.56862 -36.59646 -35.18293 -34.24115 -32.17538 -31.87942 -29.73113 -29.39062 -25.77271 -24.06766 -23.70310 -22.28351 -21.49707 -18.67780 -17.47092 -16.87863 -16.79009 -16.09539 -15.17661 -14.95042 -14.63914 -14.35184 -14.06013 -13.81357 -13.27216 -13.00569 -12.78995 -12.59910 -11.99467 -11.79510 -11.69557 -11.63361 -11.47916 -11.11090 -11.03937 -10.89242 -10.65796 -10.34326 -10.24363 -10.04171 -9.88249 -9.68101 -8.95111 -8.89883 -8.34389 -7.46951 -6.32071 -3.92220 0.81222 1.05079 1.85835 3.17607 3.26536 3.32452 3.51563 3.93833 4.16118 4.33531 4.62966 4.69762 4.81041 4.95761 5.04807 5.11786 5.32851 5.56193 5.60454 5.81802 5.85005 5.88297 5.98762 6.13225 6.25476 6.34493 6.35381 6.49532 6.53263 6.59225 6.91683 7.29059 7.59203 7.61006 8.26436 8.53160 9.20999 9.44745 10.04445 10.71736 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.029008 B = 0.004326 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.026309 B = 6470.440581 C = 6682.958931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.095 3.905 3 N -0.440 5.440 4 C -0.306 4.306 5 H 0.092 0.908 6 C 0.035 3.965 7 N -0.871 5.871 8 Si 0.916 3.084 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.459 3.541 13 O -0.585 6.585 14 C -0.128 4.128 15 C -0.064 4.064 16 C -0.103 4.103 17 C -0.063 4.063 18 C -0.168 4.168 19 C 0.103 3.897 20 N -0.479 5.479 21 C 0.172 3.828 22 Cl -0.025 7.025 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.042 0.958 26 H 0.113 0.887 27 H 0.046 0.954 28 H 0.267 0.733 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.956 -3.236 14.422 15.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.029 4.029 3 N -0.159 5.159 4 C -0.434 4.434 5 H 0.109 0.891 6 C -0.169 4.169 7 N -0.509 5.509 8 Si 0.742 3.258 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.194 1.194 12 C 0.247 3.753 13 O -0.469 6.469 14 C -0.168 4.168 15 C -0.102 4.102 16 C -0.107 4.107 17 C -0.089 4.089 18 C -0.188 4.188 19 C -0.054 4.054 20 N -0.190 5.190 21 C 0.008 3.992 22 Cl 0.004 6.996 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.131 0.869 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.662 -2.821 14.425 15.420 hybrid contribution 0.691 0.023 -1.095 1.295 sum -3.970 -2.798 13.331 14.188 Atomic orbital electron populations 1.22213 0.98248 1.00330 1.01531 1.21588 0.91716 0.85547 1.04028 1.43525 1.55612 1.11833 1.04943 1.19449 1.39593 0.95440 0.88897 0.89066 1.25310 0.94593 0.96490 1.00464 1.69921 1.32767 1.15357 1.32862 0.86113 0.79053 0.78350 0.82270 1.20323 1.20832 1.19422 1.20191 0.82450 0.87915 0.84758 1.90511 1.50723 1.18765 1.86907 1.21594 1.02741 0.98907 0.93601 1.20373 1.03767 0.98047 0.88019 1.20849 0.91712 0.99344 0.98745 1.21616 1.00116 0.94267 0.92904 1.22221 0.97793 1.00814 0.97986 1.22612 0.88729 0.96088 0.97964 1.67010 1.39156 1.09295 1.03494 1.21609 0.88164 0.97689 0.91754 1.98420 1.53457 1.82972 1.64759 0.92441 0.93141 0.93863 0.86913 0.93527 0.92289 0.90291 0.90143 0.89376 0.89668 0.83648 0.84126 0.82082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 10.15 37.16 0.38 -2.67 16 2 C 0.10 2.08 5.43 -4.04 -0.02 2.06 16 3 N -0.44 -11.13 2.56 -114.81 -0.29 -11.42 16 4 C -0.31 -8.48 8.98 -14.93 -0.13 -8.62 16 5 H 0.09 2.66 7.70 -52.49 -0.40 2.25 16 6 C 0.03 0.92 4.92 -17.47 -0.09 0.84 16 7 N -0.87 -23.30 11.33 55.50 0.63 -22.67 16 8 Si 0.92 20.55 29.61 -169.99 -5.03 15.51 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 C 0.46 11.07 7.59 -10.98 -0.08 10.99 16 13 O -0.58 -16.03 15.81 5.55 0.09 -15.94 16 14 C -0.13 -2.35 4.24 -27.89 -0.12 -2.47 16 15 C -0.06 -1.04 4.10 -27.89 -0.11 -1.15 16 16 C -0.10 -1.43 5.16 -104.44 -0.54 -1.97 16 17 C -0.06 -0.70 9.82 -39.28 -0.39 -1.09 16 18 C -0.17 -1.54 10.11 -39.44 -0.40 -1.94 16 19 C 0.10 1.06 11.18 -17.55 -0.20 0.86 16 20 N -0.48 -6.51 10.34 -10.36 -0.11 -6.62 16 21 C 0.17 2.48 7.27 -17.45 -0.13 2.36 16 22 Cl -0.02 -0.36 26.80 -51.86 -1.39 -1.75 16 23 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.76 6.60 -51.93 -0.34 0.42 16 26 H 0.11 2.72 5.34 -51.93 -0.28 2.44 16 27 H 0.05 0.93 6.66 -51.93 -0.35 0.58 16 28 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.08 1.36 7.41 -51.93 -0.38 0.98 16 30 H 0.08 1.41 5.67 -51.93 -0.29 1.11 16 31 H 0.09 1.53 7.33 -51.93 -0.38 1.14 16 32 H 0.08 1.38 7.99 -51.93 -0.41 0.97 16 33 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 34 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.16 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 310.18 15.07 4.67 4.67 Total: -1.00 -31.57 310.18 -7.35 -38.92 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.09 Total: 2.11 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.83 Total: -2.80 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.23 Total: -40.72 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.09 Total: -15.94 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.51 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.39 Total: -1.75 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.57 -7.35 -38.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823542339.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.385 kcal (2) G-P(sol) polarization free energy of solvation -31.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds