Wall clock time and date at job start Tue Mar 31 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47398 * 2 1 4 4 C 1.37100 * 120.00121 * 264.75134 * 3 2 1 5 5 H 1.07995 * 119.99981 * 146.16848 * 4 3 2 6 6 C 1.38950 * 119.99543 * 326.16650 * 4 3 2 7 7 N 1.31416 * 120.00240 * 337.67024 * 6 4 3 8 8 Si 1.86803 * 119.99898 * 157.67921 * 6 4 3 9 9 H 1.48503 * 109.46996 * 89.99628 * 8 6 4 10 10 H 1.48499 * 109.47054 * 209.99398 * 8 6 4 11 11 H 1.48502 * 109.46744 * 329.99775 * 8 6 4 12 12 C 1.34781 * 119.99762 * 84.74806 * 3 2 1 13 13 O 1.21293 * 119.99445 * 180.02562 * 12 3 2 14 14 C 1.50697 * 120.00167 * 0.02562 * 12 3 2 15 15 C 1.52996 * 109.47228 * 180.02562 * 14 12 3 16 16 C 1.50697 * 109.47228 * 180.02562 * 15 14 12 17 17 C 1.38613 * 120.42369 * 99.97744 * 16 15 14 18 18 C 1.38672 * 118.43689 * 180.02562 * 17 16 15 19 19 C 1.38184 * 119.18966 * 0.02562 * 18 17 16 20 20 N 1.31881 * 120.78590 * 359.97438 * 19 18 17 21 21 C 1.31979 * 121.70260 * 359.97438 * 20 19 18 22 22 Cl 1.73597 * 119.63239 * 179.97438 * 21 20 19 23 23 H 1.09004 * 109.46734 * 60.00049 * 1 2 3 24 24 H 1.09004 * 109.46867 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46820 * 300.00192 * 1 2 3 26 26 H 1.09001 * 109.47288 * 239.99571 * 2 1 3 27 27 H 1.09004 * 109.46734 * 119.99951 * 2 1 3 28 28 H 0.96994 * 120.00036 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.47121 * 59.99895 * 14 12 3 30 30 H 1.09002 * 109.47216 * 300.00324 * 14 12 3 31 31 H 1.09003 * 109.47054 * 60.00018 * 15 14 12 32 32 H 1.09002 * 109.47128 * 300.00184 * 15 14 12 33 33 H 1.07997 * 120.78160 * 0.04730 * 17 16 15 34 34 H 1.07998 * 120.40181 * 180.02562 * 18 17 16 35 35 H 1.08005 * 119.60874 * 180.25466 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3494 1.9913 -1.1823 5 1 2.1816 3.0506 -1.3088 6 6 2.9006 1.2466 -2.2178 7 7 3.5053 0.1088 -1.9594 8 14 2.7823 1.8629 -3.9773 9 1 3.9646 2.7066 -4.2867 10 1 2.7441 0.7047 -4.9059 11 1 1.5444 2.6673 -4.1378 12 6 2.1423 2.0521 1.1624 13 8 2.5463 3.1958 1.1623 14 6 1.7791 1.3814 2.4620 15 6 2.0094 2.3544 3.6200 16 6 1.6467 1.6834 4.9197 17 6 2.6341 1.1536 5.7356 18 6 2.2541 0.5448 6.9221 19 6 0.9130 0.4860 7.2500 20 7 -0.0007 1.0006 6.4501 21 6 0.3240 1.5883 5.3138 22 17 -0.9229 2.2468 4.3013 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8904 -0.4109 -2.6822 29 1 2.4010 0.4971 2.6008 30 1 0.7297 1.0873 2.4382 31 1 1.3871 3.2384 3.4810 32 1 3.0586 2.6488 3.6439 33 1 3.6750 1.2139 5.4540 34 1 2.9971 0.1218 7.5818 35 1 0.6097 0.0171 8.1744 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823542339.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:55 Heat of formation + Delta-G solvation = -30.526810 kcal Electronic energy + Delta-G solvation = -19732.747726 eV Core-core repulsion = 16562.799750 eV Total energy + Delta-G solvation = -3169.947976 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.35332 -40.38891 -37.63921 -37.01420 -35.55349 -33.99531 -32.93046 -31.22612 -30.87856 -27.44609 -25.58193 -24.60038 -23.91514 -22.69918 -20.48549 -18.75868 -18.35534 -17.87730 -17.75877 -16.94605 -16.16053 -16.04579 -15.88256 -15.46675 -14.93369 -14.61033 -14.42631 -14.25774 -14.04341 -13.60911 -13.33633 -13.19743 -12.85213 -12.82258 -12.73544 -12.62715 -12.36592 -12.14562 -12.07013 -11.97779 -11.71316 -10.90290 -10.81363 -10.60733 -10.33057 -9.82542 -9.45381 -8.33609 -6.02124 -0.08255 0.17759 0.85885 1.37080 1.41922 1.54416 2.06292 2.30501 2.63506 3.02385 3.07870 3.47207 3.71250 3.82607 4.01838 4.03624 4.20554 4.27265 4.31918 4.38101 4.56212 4.64071 4.67132 4.80992 4.92337 5.03677 5.07693 5.17644 5.25633 5.30290 5.46954 5.57402 5.58255 6.21841 6.54968 6.71737 7.19898 7.50398 8.09770 8.68742 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.029008 B = 0.004326 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.026309 B = 6470.440581 C = 6682.958931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.094 3.906 3 N -0.454 5.454 4 C -0.343 4.343 5 H 0.063 0.937 6 C 0.005 3.995 7 N -0.887 5.887 8 Si 0.978 3.022 9 H -0.278 1.278 10 H -0.266 1.266 11 H -0.270 1.270 12 C 0.445 3.555 13 O -0.629 6.629 14 C -0.111 4.111 15 C -0.053 4.053 16 C -0.119 4.119 17 C -0.064 4.064 18 C -0.150 4.150 19 C 0.105 3.895 20 N -0.503 5.503 21 C 0.155 3.845 22 Cl -0.045 7.045 23 H 0.041 0.959 24 H 0.084 0.916 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.274 0.726 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.164 0.836 34 H 0.184 0.816 35 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.663 -5.158 15.990 17.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.029 4.029 3 N -0.172 5.172 4 C -0.471 4.471 5 H 0.080 0.920 6 C -0.197 4.197 7 N -0.525 5.525 8 Si 0.801 3.199 9 H -0.204 1.204 10 H -0.191 1.191 11 H -0.194 1.194 12 C 0.235 3.765 13 O -0.516 6.516 14 C -0.151 4.151 15 C -0.092 4.092 16 C -0.122 4.122 17 C -0.090 4.090 18 C -0.169 4.169 19 C -0.052 4.052 20 N -0.214 5.214 21 C -0.008 4.008 22 Cl -0.016 7.016 23 H 0.060 0.940 24 H 0.102 0.898 25 H 0.068 0.932 26 H 0.109 0.891 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.182 0.818 34 H 0.201 0.799 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.382 -4.776 15.998 17.261 hybrid contribution 0.672 0.563 -1.460 1.703 sum -3.710 -4.213 14.538 15.584 Atomic orbital electron populations 1.22109 0.95697 1.02378 1.01102 1.21678 0.93792 0.83641 1.03775 1.43811 1.55665 1.13029 1.04723 1.19384 1.41821 0.94825 0.91055 0.91953 1.26009 0.93550 0.96561 1.03608 1.69976 1.32417 1.15909 1.34191 0.85189 0.78719 0.78249 0.77704 1.20360 1.19065 1.19450 1.21153 0.81456 0.87555 0.86329 1.90466 1.52568 1.20778 1.87816 1.21470 1.03355 0.99232 0.91058 1.20152 1.03006 0.97146 0.88880 1.20611 0.92278 1.01024 0.98287 1.21939 1.00405 0.93535 0.93150 1.22660 0.98253 0.98763 0.97213 1.23362 0.88943 0.94619 0.98307 1.67021 1.40601 1.10185 1.03632 1.21596 0.87848 0.98942 0.92438 1.98404 1.54318 1.83422 1.65494 0.94002 0.89769 0.93157 0.89066 0.91677 0.91635 0.88763 0.89168 0.91312 0.90204 0.81825 0.79886 0.78470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.57 10.15 71.98 0.73 -4.84 16 2 C 0.09 4.10 5.43 86.38 0.47 4.57 16 3 N -0.45 -23.50 2.56 -635.53 -1.63 -25.13 16 4 C -0.34 -19.67 8.98 84.04 0.75 -18.92 16 5 H 0.06 3.85 7.70 -2.91 -0.02 3.82 16 6 C 0.01 0.27 4.92 84.93 0.42 0.69 16 7 N -0.89 -47.51 11.33 21.66 0.25 -47.26 16 8 Si 0.98 42.43 29.61 68.60 2.03 44.47 16 9 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 C 0.44 22.12 7.59 87.66 0.67 22.79 16 13 O -0.63 -36.11 15.81 -3.07 -0.05 -36.16 16 14 C -0.11 -4.08 4.24 29.85 0.13 -3.95 16 15 C -0.05 -1.75 4.10 29.85 0.12 -1.63 16 16 C -0.12 -3.15 5.16 -19.75 -0.10 -3.25 16 17 C -0.06 -1.24 9.82 22.46 0.22 -1.02 16 18 C -0.15 -2.07 10.11 22.36 0.23 -1.85 16 19 C 0.10 1.75 11.18 84.67 0.95 2.69 16 20 N -0.50 -12.69 10.34 -186.69 -1.93 -14.62 16 21 C 0.15 4.33 7.27 84.70 0.62 4.95 16 22 Cl -0.04 -1.34 26.80 -2.72 -0.07 -1.41 16 23 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 24 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 25 H 0.05 1.72 6.60 -2.39 -0.02 1.70 16 26 H 0.09 4.39 5.34 -2.39 -0.01 4.38 16 27 H 0.06 2.52 6.66 -2.38 -0.02 2.51 16 28 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 29 H 0.09 3.15 7.41 -2.39 -0.02 3.13 16 30 H 0.09 3.13 5.67 -2.39 -0.01 3.11 16 31 H 0.07 2.49 7.33 -2.39 -0.02 2.47 16 32 H 0.08 2.64 7.99 -2.39 -0.02 2.62 16 33 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.20 1.73 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -71.32 310.18 4.90 -66.42 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.11 Total: 13.46 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 5.19 Total: 0.24 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -3.31 Total: -87.01 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -0.05 Total: -36.16 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.07 Total: -1.41 kcal Total: -71.32 4.90 -66.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823542339.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.891 kcal (2) G-P(sol) polarization free energy of solvation -71.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds