Wall clock time and date at job start Tue Mar 31 2020 06:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.72498 * 9 7 2 11 11 C 1.34778 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21585 * 120.00103 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99898 * 180.02562 * 11 10 9 14 14 C 1.46633 * 126.56424 * 359.68992 * 13 11 10 15 15 C 1.50794 * 107.70559 * 179.84858 * 14 13 11 16 16 C 1.38451 * 131.14624 * 180.10426 * 15 14 13 17 17 C 1.38297 * 120.11838 * 180.33002 * 16 15 14 18 18 F 1.35096 * 120.05445 * 180.02562 * 17 16 15 19 19 C 1.38687 * 119.88537 * 0.02562 * 17 16 15 20 20 F 1.35100 * 120.05728 * 179.97438 * 19 17 16 21 21 C 1.38296 * 119.88667 * 0.02562 * 19 17 16 22 22 C 1.38076 * 108.85432 * 0.42388 * 15 14 13 23 23 C 1.46637 * 126.56185 * 180.02562 * 13 11 10 24 24 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 26 26 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 27 27 H 0.97005 * 120.00530 * 0.02562 * 10 9 7 28 28 H 1.09001 * 109.80797 * 299.54959 * 14 13 11 29 29 H 1.08998 * 109.80761 * 60.44819 * 14 13 11 30 30 H 1.08005 * 119.94223 * 0.34914 * 16 15 14 31 31 H 1.08000 * 119.94003 * 179.97438 * 21 19 17 32 32 H 1.09007 * 109.80991 * 299.54884 * 23 13 11 33 33 H 1.08994 * 109.81100 * 60.38101 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6126 -0.0078 11 6 1.7536 -4.8833 -0.0086 12 8 0.5582 -5.1055 -0.0037 13 7 2.6294 -5.9077 -0.0147 14 6 4.0921 -5.8064 -0.0274 15 6 4.6490 -7.2077 -0.0265 16 6 5.9543 -7.6693 -0.0337 17 6 6.2096 -9.0285 -0.0378 18 9 7.4838 -9.4775 -0.0444 19 6 5.1555 -9.9297 -0.0353 20 9 5.4010 -11.2582 -0.0398 21 6 3.8526 -9.4661 -0.0291 22 6 3.5994 -8.1049 -0.0238 23 6 2.3017 -7.3370 -0.0169 24 1 -0.4851 0.8401 0.0004 25 1 0.6283 -2.5592 0.8921 26 1 0.6202 -2.5546 -0.8878 27 1 3.1566 -3.4354 -0.0113 28 1 4.4180 -5.2775 -0.9230 29 1 4.4333 -5.2751 0.8611 30 1 6.7745 -6.9667 -0.0358 31 1 3.0310 -10.1672 -0.0275 32 1 1.7299 -7.5863 0.8770 33 1 1.7216 -7.5817 -0.9066 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847362403.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:43 Heat of formation + Delta-G solvation = -81.459078 kcal Electronic energy + Delta-G solvation = -20839.882797 eV Core-core repulsion = 17115.929552 eV Total energy + Delta-G solvation = -3723.953245 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.79134 -48.86945 -40.85286 -38.83708 -35.89428 -34.27274 -32.46373 -31.94423 -30.71172 -28.07738 -27.17473 -25.28550 -22.83463 -22.28133 -21.86143 -19.74597 -18.44118 -17.92839 -17.39283 -16.94263 -16.73906 -16.06171 -15.97030 -15.44987 -15.28015 -14.77943 -14.65288 -14.39454 -14.22933 -13.98972 -13.16631 -13.14050 -13.12715 -12.92030 -12.20536 -12.18252 -11.94880 -11.71031 -11.43838 -10.99788 -10.91791 -10.34967 -9.63336 -9.42154 -9.41936 -9.18001 -8.78288 -8.40689 -7.84734 -6.19286 -4.26355 0.46328 0.56092 2.79443 2.86752 3.22564 3.27483 3.29062 3.31233 3.73337 3.80580 3.86149 4.15430 4.28449 4.53140 4.65831 4.81212 5.00708 5.17072 5.25710 5.27022 5.32956 5.45780 5.47880 5.48685 5.56852 5.88934 6.25042 6.30553 7.04146 7.39222 7.47993 7.50285 7.76999 7.95808 8.66328 8.79658 9.18129 9.41161 10.90899 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.033998 B = 0.003169 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.375694 B = 8834.783727 C = 9632.359032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.722 5.722 11 C 0.721 3.279 12 O -0.588 6.588 13 N -0.643 5.643 14 C 0.146 3.854 15 C -0.080 4.080 16 C -0.102 4.102 17 C 0.070 3.930 18 F -0.126 7.126 19 C 0.072 3.928 20 F -0.126 7.126 21 C -0.103 4.103 22 C -0.079 4.079 23 C 0.171 3.829 24 H 0.266 0.734 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.387 0.613 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.086 0.914 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.519 -17.475 -0.095 21.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.374 5.374 11 C 0.422 3.578 12 O -0.466 6.466 13 N -0.384 5.384 14 C 0.022 3.978 15 C -0.081 4.081 16 C -0.121 4.121 17 C 0.050 3.950 18 F -0.105 7.105 19 C 0.051 3.949 20 F -0.105 7.105 21 C -0.122 4.122 22 C -0.080 4.080 23 C 0.048 3.952 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.220 0.780 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.169 0.831 31 H 0.169 0.831 32 H 0.104 0.896 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.388 -17.411 -0.084 20.805 hybrid contribution 1.309 0.570 -0.017 1.427 sum 12.697 -16.842 -0.101 21.092 Atomic orbital electron populations 1.69974 1.06102 1.27368 1.48749 1.24938 0.94918 0.99418 0.94683 0.86401 0.79602 0.82594 0.78226 1.20454 1.20993 1.19741 1.21197 0.93269 0.90326 1.53392 0.91909 1.19053 0.87721 0.80858 0.97833 1.45750 1.11071 1.03917 1.76682 1.15438 0.83777 0.80029 0.78507 1.90910 1.13303 1.83507 1.58847 1.47065 1.04964 1.05197 1.81192 1.20229 0.81680 0.92665 1.03228 1.20182 0.92435 0.96334 0.99172 1.20282 0.97110 0.92972 1.01744 1.17382 0.78559 0.92076 1.06976 1.91543 1.35324 1.89576 1.94040 1.17390 0.92973 0.77656 1.06831 1.91544 1.94947 1.29966 1.94028 1.20264 0.94924 0.95123 1.01910 1.20284 0.96507 0.92547 0.98677 1.19910 0.92448 0.79371 1.03511 0.92390 0.95524 0.95510 0.77995 0.89470 0.89503 0.83115 0.83145 0.89571 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.63 13.29 55.43 0.74 -24.90 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.54 -14.39 9.28 -34.44 -0.32 -14.71 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.27 6.91 5.43 -5.19 -0.03 6.89 16 10 N -0.72 -14.93 5.51 -66.42 -0.37 -15.30 16 11 C 0.72 14.45 8.51 -86.92 -0.74 13.71 16 12 O -0.59 -14.25 16.72 5.29 0.09 -14.16 16 13 N -0.64 -9.48 3.34 -181.86 -0.61 -10.08 16 14 C 0.15 1.57 6.22 -5.08 -0.03 1.54 16 15 C -0.08 -0.77 6.22 -104.56 -0.65 -1.42 16 16 C -0.10 -0.86 10.02 -39.48 -0.40 -1.26 16 17 C 0.07 0.68 7.31 -39.39 -0.29 0.39 16 18 F -0.13 -1.32 17.19 2.25 0.04 -1.29 16 19 C 0.07 0.69 7.31 -39.39 -0.29 0.41 16 20 F -0.13 -1.32 17.19 2.25 0.04 -1.29 16 21 C -0.10 -0.89 10.02 -39.48 -0.40 -1.28 16 22 C -0.08 -0.78 6.22 -104.56 -0.65 -1.43 16 23 C 0.17 2.05 6.91 -5.08 -0.04 2.02 16 24 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.39 6.80 7.37 -40.82 -0.30 6.50 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.15 0.94 8.06 -52.48 -0.42 0.51 16 31 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 301.22 15.07 4.54 4.54 Total: -1.00 -31.92 301.22 -7.69 -39.61 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -3.22 Total: 0.98 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: -3.92 Total: 6.50 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.24 Total: -50.28 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.09 Total: -14.16 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.08 Total: -2.57 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.92 -7.69 -39.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847362403.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.853 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds