Wall clock time and date at job start Tue Mar 31 2020 05:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38345 * 120.33188 * 2 1 4 4 N 1.31926 * 121.11070 * 179.97438 * 3 2 1 5 5 C 1.31823 * 121.85330 * 359.76986 * 4 3 2 6 6 Cl 1.73599 * 119.73509 * 180.26585 * 5 4 3 7 7 C 1.39717 * 120.52927 * 0.49185 * 5 4 3 8 8 C 1.47755 * 120.56848 * 179.77716 * 7 5 4 9 9 O 1.21567 * 120.00186 * 317.42593 * 8 7 5 10 10 N 1.34783 * 119.99978 * 137.15219 * 8 7 5 11 11 C 1.46492 * 119.99770 * 355.17839 * 10 8 7 12 12 C 1.46499 * 119.99928 * 175.17928 * 10 8 7 13 13 H 1.08997 * 109.47044 * 0.02562 * 12 10 8 14 14 C 1.52996 * 109.47238 * 239.99907 * 12 10 8 15 15 C 1.50702 * 109.46876 * 119.99751 * 12 10 8 16 16 H 1.07997 * 120.00243 * 0.02562 * 15 12 10 17 17 C 1.37874 * 119.99971 * 179.97438 * 15 12 10 18 18 N 1.31518 * 119.99998 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 120.00324 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.46834 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47180 * 119.99810 * 19 17 15 22 22 H 1.48495 * 109.47499 * 240.00450 * 19 17 15 23 23 C 1.38354 * 120.32987 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47087 * 270.03108 * 1 2 3 25 25 H 1.08999 * 109.46564 * 30.02110 * 1 2 3 26 26 H 1.08991 * 109.46959 * 150.02558 * 1 2 3 27 27 H 1.07999 * 119.44740 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.47496 * 119.00544 * 11 10 8 29 29 H 1.09000 * 109.47074 * 239.00293 * 11 10 8 30 30 H 1.09005 * 109.47347 * 359.00423 * 11 10 8 31 31 H 1.08996 * 109.47038 * 180.02562 * 14 12 10 32 32 H 1.09005 * 109.46684 * 300.00329 * 14 12 10 33 33 H 1.09002 * 109.46869 * 59.99741 * 14 12 10 34 34 H 0.96995 * 119.99967 * 179.97438 * 18 17 15 35 35 H 1.08004 * 120.84390 * 0.04716 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2056 1.1941 0.0000 4 7 3.5248 1.2120 0.0005 5 6 4.2356 0.1019 0.0055 6 17 5.9694 0.1896 0.0129 7 6 3.6049 -1.1448 0.0002 8 6 4.4008 -2.3897 0.0009 9 8 5.3844 -2.4826 -0.7074 10 7 4.0395 -3.4201 0.7910 11 6 2.9219 -3.2693 1.7260 12 6 4.7644 -4.6909 0.7146 13 1 5.5562 -4.6133 -0.0305 14 6 3.7966 -5.8071 0.3168 15 6 5.3692 -5.0057 2.0586 16 1 5.2274 -4.3272 2.8868 17 6 6.1027 -6.1603 2.2311 18 7 6.2750 -6.9867 1.2226 19 14 6.8518 -6.5509 3.8971 20 1 6.5139 -5.4698 4.8575 21 1 6.3091 -7.8409 4.3937 22 1 8.3274 -6.6526 3.7649 23 6 2.2057 -1.1942 0.0005 24 1 -0.3633 0.0006 1.0277 25 1 -0.3632 0.8898 -0.5142 26 1 -0.3633 -0.8901 -0.5134 27 1 1.6621 2.1273 -0.0004 28 1 2.1409 -3.9880 1.4777 29 1 3.2718 -3.4498 2.7424 30 1 2.5215 -2.2581 1.6537 31 1 4.3359 -6.7526 0.2605 32 1 3.0051 -5.8844 1.0623 33 1 3.3592 -5.5793 -0.6552 34 1 6.7914 -7.7988 1.3439 35 1 1.6849 -2.1404 0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879104332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:12 Heat of formation + Delta-G solvation = 1.932247 kcal Electronic energy + Delta-G solvation = -20070.155036 eV Core-core repulsion = 16901.614591 eV Total energy + Delta-G solvation = -3168.540446 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.70789 -38.68327 -36.49869 -35.40293 -33.83779 -33.10893 -31.94239 -29.22441 -27.38602 -26.39320 -25.27215 -24.45913 -22.99830 -20.96958 -18.74998 -17.35400 -17.15475 -16.68490 -16.23948 -15.52239 -14.79367 -14.36684 -14.16061 -14.06262 -13.64705 -13.31948 -13.21027 -12.80310 -12.60053 -12.42246 -12.11114 -11.78571 -11.56776 -11.33063 -11.11845 -10.95150 -10.83767 -10.75482 -10.29158 -10.18869 -9.96461 -9.76559 -9.21911 -9.01770 -8.81832 -8.45424 -7.66287 -6.09494 -4.17159 0.62005 0.93387 1.95469 3.12355 3.25303 3.33564 3.36268 3.56149 3.80604 4.35488 4.39865 4.52154 4.64942 4.68026 4.90026 5.14315 5.22835 5.31470 5.42679 5.54909 5.64061 5.71509 5.91463 5.95321 6.26418 6.28903 6.69314 6.75775 6.99122 7.32366 7.45284 7.55796 7.67784 7.96884 8.14494 8.41216 8.76596 8.93302 9.49182 10.96015 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.021255 B = 0.005354 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.046571 B = 5228.590990 C = 5859.014245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.147 4.147 3 C 0.126 3.874 4 N -0.480 5.480 5 C 0.206 3.794 6 Cl -0.002 7.002 7 C -0.146 4.146 8 C 0.545 3.455 9 O -0.523 6.523 10 N -0.581 5.581 11 C 0.071 3.929 12 C 0.259 3.741 13 H 0.066 0.934 14 C -0.147 4.147 15 C -0.524 4.524 16 H 0.060 0.940 17 C 0.065 3.935 18 N -0.888 5.888 19 Si 0.898 3.102 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.038 4.038 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.165 0.835 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.030 0.970 33 H 0.011 0.989 34 H 0.263 0.737 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.877 12.415 -0.940 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.149 4.149 3 C -0.032 4.032 4 N -0.190 5.190 5 C 0.041 3.959 6 Cl 0.027 6.973 7 C -0.153 4.153 8 C 0.330 3.670 9 O -0.400 6.400 10 N -0.312 5.312 11 C -0.072 4.072 12 C 0.159 3.841 13 H 0.084 0.916 14 C -0.205 4.205 15 C -0.563 4.563 16 H 0.078 0.922 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.064 4.064 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.182 0.818 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.050 0.950 33 H 0.030 0.970 34 H 0.073 0.927 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.637 12.944 -1.349 17.458 hybrid contribution 0.080 -1.020 1.019 1.444 sum -11.557 11.924 -0.330 16.609 Atomic orbital electron populations 1.20717 0.89302 1.03487 1.02966 1.20926 0.98123 0.93627 1.02232 1.22699 0.88290 0.97929 0.94302 1.67118 1.08299 1.29945 1.13610 1.21743 0.88739 0.88545 0.96855 1.98452 1.04590 1.98458 1.95825 1.21004 0.94720 0.95032 1.04521 1.17853 0.84642 0.82557 0.81982 1.90797 1.25724 1.81183 1.42272 1.48155 1.32673 1.14056 1.36325 1.21942 0.89842 1.00351 0.95098 1.19001 0.90433 0.76253 0.98384 0.91626 1.22092 0.98928 1.03285 0.96225 1.21312 1.32862 1.06189 0.95912 0.92170 1.24877 0.95862 0.95949 0.97028 1.69881 1.40168 1.12176 1.30366 0.86437 0.79099 0.78130 0.83724 1.19817 1.20936 1.20863 1.21798 0.91902 0.99294 0.93407 0.90499 0.90907 0.90921 0.81751 0.92335 0.91379 0.91923 0.88626 0.95047 0.96958 0.92706 0.83056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.03 36.01 0.36 -0.31 16 2 C -0.15 -1.49 5.89 -104.54 -0.62 -2.11 16 3 C 0.13 1.38 10.85 -17.47 -0.19 1.19 16 4 N -0.48 -7.11 10.33 -10.01 -0.10 -7.21 16 5 C 0.21 3.51 7.30 -17.00 -0.12 3.39 16 6 Cl 0.00 -0.04 27.10 -51.86 -1.41 -1.44 16 7 C -0.15 -2.49 5.10 -104.79 -0.53 -3.02 16 8 C 0.55 11.53 6.93 -12.37 -0.09 11.44 16 9 O -0.52 -12.94 14.82 5.31 0.08 -12.86 16 10 N -0.58 -12.27 2.75 -176.42 -0.49 -12.75 16 11 C 0.07 1.17 8.70 59.84 0.52 1.69 16 12 C 0.26 6.51 2.63 -69.08 -0.18 6.33 16 13 H 0.07 1.92 6.91 -51.93 -0.36 1.56 16 14 C -0.15 -3.40 8.88 37.16 0.33 -3.07 16 15 C -0.52 -14.05 8.29 -34.44 -0.29 -14.33 16 16 H 0.06 1.60 7.06 -52.49 -0.37 1.23 16 17 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -24.87 11.32 55.43 0.63 -24.24 16 19 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.04 -0.48 7.13 -38.88 -0.28 -0.76 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 26 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 28 H 0.06 0.86 7.22 -51.93 -0.37 0.49 16 29 H 0.07 1.18 7.19 -51.93 -0.37 0.81 16 30 H 0.06 0.85 4.33 -51.93 -0.23 0.63 16 31 H 0.10 2.45 6.07 -51.93 -0.32 2.14 16 32 H 0.03 0.66 7.16 -51.93 -0.37 0.29 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.15 1.69 6.80 -52.48 -0.36 1.34 16 LS Contribution 305.78 15.07 4.61 4.61 Total: -1.00 -31.60 305.78 -6.87 -38.46 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -3.99 Total: -2.65 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -1.18 Total: 2.10 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.04 Total: -44.20 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.86 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.41 Total: -1.44 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.60 -6.87 -38.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879104332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.395 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds