Wall clock time and date at job start Tue Mar 31 2020 05:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21562 * 120.00255 * 359.97438 * 14 13 3 16 16 C 1.47756 * 119.99793 * 180.02562 * 14 13 3 17 17 C 1.40017 * 120.57368 * 359.97438 * 16 14 13 18 18 C 1.38348 * 118.30962 * 179.97438 * 17 16 14 19 19 C 1.50698 * 120.33206 * 180.02562 * 18 17 16 20 20 C 1.38355 * 119.33761 * 359.97438 * 18 17 16 21 21 N 1.31916 * 121.10781 * 0.02562 * 20 18 17 22 22 C 1.31831 * 121.86054 * 359.72882 * 21 20 18 23 23 Cl 1.73595 * 119.73651 * 180.28807 * 22 21 20 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 31 31 H 1.08008 * 120.84302 * 359.95774 * 17 16 14 32 32 H 1.09004 * 109.46968 * 90.00042 * 19 18 17 33 33 H 1.09001 * 109.47058 * 209.99895 * 19 18 17 34 34 H 1.09001 * 109.47245 * 330.00014 * 19 18 17 35 35 H 1.07999 * 119.44766 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3410 2.6326 0.4320 16 6 0.0446 3.3254 2.6293 17 6 0.9293 3.3694 3.7137 18 6 0.5154 4.0009 4.8730 19 6 1.4312 4.0754 6.0675 20 6 -0.7472 4.5642 4.9243 21 7 -1.5611 4.5083 3.8877 22 6 -1.2118 3.9224 2.7595 23 17 -2.3241 3.8876 1.4271 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8292 -0.0604 -2.9503 30 1 2.2720 2.1231 1.9978 31 1 1.9099 2.9216 3.6468 32 1 2.0333 4.9820 6.0077 33 1 0.8363 4.0939 6.9807 34 1 2.0861 3.2042 6.0781 35 1 -1.0720 5.0579 5.8283 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879483587.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:04 Heat of formation + Delta-G solvation = -11.668659 kcal Electronic energy + Delta-G solvation = -19895.043288 eV Core-core repulsion = 16725.913063 eV Total energy + Delta-G solvation = -3169.130225 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.58611 -38.67062 -36.41189 -35.08914 -33.78405 -32.73373 -31.97200 -30.59691 -27.37194 -27.01825 -24.62584 -23.29824 -22.38625 -20.39571 -19.44172 -17.87116 -17.05199 -16.97256 -15.73430 -15.27180 -15.03598 -14.42684 -14.19987 -14.07758 -13.70626 -13.28702 -13.12556 -12.81188 -12.69472 -12.19071 -12.06274 -11.54189 -11.33043 -11.28811 -11.09704 -10.90408 -10.83306 -10.33864 -10.20999 -9.97335 -9.91523 -9.62795 -9.08493 -8.85912 -8.81621 -8.53282 -7.87378 -6.15661 -4.25506 0.57079 0.94451 2.01035 3.14966 3.21624 3.28963 3.30483 3.82214 3.94226 4.30559 4.43335 4.48054 4.64916 4.74832 4.92861 5.15874 5.32931 5.37044 5.46781 5.65707 5.69629 5.96765 6.28439 6.38697 6.45500 6.64997 7.02663 7.17784 7.32240 7.38707 7.53552 7.58878 7.68646 7.86144 8.14306 8.56594 8.72197 9.02031 9.41639 10.89611 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.019529 B = 0.005238 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.433790 B = 5343.801163 C = 6349.456150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.053 0.947 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.699 5.699 14 C 0.540 3.460 15 O -0.517 6.517 16 C -0.154 4.154 17 C -0.038 4.038 18 C -0.146 4.146 19 C -0.109 4.109 20 C 0.127 3.873 21 N -0.483 5.483 22 C 0.209 3.791 23 Cl 0.009 6.991 24 H 0.051 0.949 25 H 0.038 0.962 26 H 0.022 0.978 27 H 0.030 0.970 28 H 0.100 0.900 29 H 0.265 0.735 30 H 0.385 0.615 31 H 0.148 0.852 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.214 5.866 14.838 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.347 5.347 14 C 0.324 3.676 15 O -0.394 6.394 16 C -0.160 4.160 17 C -0.064 4.064 18 C -0.148 4.148 19 C -0.166 4.166 20 C -0.031 4.031 21 N -0.193 5.193 22 C 0.044 3.956 23 Cl 0.038 6.962 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.218 0.782 31 H 0.166 0.834 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.675 6.093 13.850 16.160 hybrid contribution 2.008 -0.399 0.150 2.053 sum -3.667 5.695 14.000 15.552 Atomic orbital electron populations 1.21843 0.98221 0.98119 1.01322 1.21937 0.92702 0.99643 1.02311 1.18844 0.94280 0.89217 0.80637 0.92961 1.21198 0.90587 1.39242 1.06380 0.92136 1.24875 0.98587 0.94765 0.95344 1.69893 1.35143 1.37435 1.09301 0.86462 0.84862 0.78413 0.77446 1.20541 1.21043 1.19888 1.46450 1.14024 1.55575 1.18697 1.17767 0.83546 0.80045 0.86292 1.90845 1.50730 1.58806 1.39059 1.21069 0.94634 1.02771 0.97537 1.21769 0.99115 0.94697 0.90856 1.20928 0.96991 0.99902 0.96972 1.20730 0.98285 1.03238 0.94329 1.22716 0.89260 0.95181 0.95924 1.67150 1.35907 1.16960 0.99265 1.21854 0.89469 0.94213 0.90054 1.98453 1.61095 1.96177 1.40500 0.92997 0.94304 0.95850 0.95070 0.88200 0.92505 0.78170 0.83401 0.90534 0.90943 0.90820 0.81798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.02 5.45 -26.74 -0.15 -3.17 16 3 C 0.27 6.62 2.24 -69.08 -0.15 6.46 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 5 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.18 11.30 55.43 0.63 -23.55 16 9 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 N -0.70 -13.99 4.98 -55.91 -0.28 -14.27 16 14 C 0.54 10.67 6.34 -12.37 -0.08 10.59 16 15 O -0.52 -11.65 11.13 5.31 0.06 -11.59 16 16 C -0.15 -2.50 5.89 -104.79 -0.62 -3.12 16 17 C -0.04 -0.48 9.32 -38.87 -0.36 -0.84 16 18 C -0.15 -1.49 5.89 -104.54 -0.62 -2.10 16 19 C -0.11 -0.71 10.03 36.00 0.36 -0.35 16 20 C 0.13 1.39 10.85 -17.47 -0.19 1.20 16 21 N -0.48 -7.02 10.33 -10.01 -0.10 -7.12 16 22 C 0.21 3.45 7.31 -17.00 -0.12 3.32 16 23 Cl 0.01 0.15 26.20 -51.86 -1.36 -1.21 16 24 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 25 H 0.04 0.84 5.65 -51.93 -0.29 0.54 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.39 6.57 6.65 -40.82 -0.27 6.30 16 31 H 0.15 1.56 6.52 -52.48 -0.34 1.22 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 34 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 305.55 15.07 4.60 4.60 Total: -1.00 -29.89 305.55 -7.57 -37.46 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -4.09 Total: 3.60 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -2.01 Total: -3.03 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.24 Total: -44.94 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.06 Total: -11.59 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 17 Polarization: 0.15 SS G_CDS: -1.36 Total: -1.21 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.89 -7.57 -37.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879483587.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.790 kcal (2) G-P(sol) polarization free energy of solvation -29.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds