Wall clock time and date at job start Tue Mar 31 2020 05:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21559 * 120.00322 * 359.97438 * 14 13 3 16 16 C 1.47761 * 119.99746 * 179.97438 * 14 13 3 17 17 C 1.40021 * 120.56681 * 359.97438 * 16 14 13 18 18 C 1.38349 * 118.29775 * 179.97438 * 17 16 14 19 19 C 1.50699 * 120.32604 * 180.02562 * 18 17 16 20 20 C 1.38351 * 119.34380 * 0.02562 * 18 17 16 21 21 N 1.31915 * 121.10856 * 359.97438 * 20 18 17 22 22 C 1.31828 * 121.85588 * 359.72404 * 21 20 18 23 23 Cl 1.73601 * 119.73455 * 180.29200 * 22 21 20 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 30 30 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 31 31 H 1.08000 * 120.85068 * 359.96270 * 17 16 14 32 32 H 1.09005 * 109.47160 * 90.00514 * 19 18 17 33 33 H 1.09007 * 109.47321 * 210.00133 * 19 18 17 34 34 H 1.08998 * 109.47576 * 330.00005 * 19 18 17 35 35 H 1.08006 * 119.44260 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3414 2.6319 -0.4324 16 6 0.0444 3.3253 -2.6295 17 6 0.9297 3.3701 -3.7134 18 6 0.5152 4.0005 -4.8731 19 6 1.4309 4.0748 -6.0677 20 6 -0.7482 4.5619 -4.9252 21 7 -1.5624 4.5053 -3.8889 22 6 -1.2167 3.9112 -2.7640 23 17 -2.3348 3.8626 -1.4370 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 5.8770 0.4827 2.1133 30 1 2.2720 2.1231 -1.9978 31 1 1.9110 2.9242 -3.6458 32 1 1.2708 3.2036 -6.7030 33 1 1.2169 4.9815 -6.6338 34 1 2.4673 4.0932 -5.7306 35 1 -1.0735 5.0541 -5.8299 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879483588.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:07 Heat of formation + Delta-G solvation = -3.532540 kcal Electronic energy + Delta-G solvation = -19978.413873 eV Core-core repulsion = 16809.636456 eV Total energy + Delta-G solvation = -3168.777416 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.67740 -38.88009 -36.49963 -35.36483 -33.84322 -32.81001 -32.15661 -31.04178 -27.61730 -27.33268 -24.72907 -23.13342 -22.41598 -20.76900 -19.73024 -17.97094 -17.20384 -17.01837 -16.10985 -15.53934 -15.10492 -14.63937 -14.25065 -14.10741 -13.81956 -13.35255 -13.23543 -13.04361 -12.82468 -12.38728 -12.24562 -11.95345 -11.83047 -11.40277 -11.18838 -11.04120 -10.86078 -10.66146 -10.07857 -9.99983 -9.92712 -9.53677 -9.27341 -8.99183 -8.89604 -8.78764 -8.12689 -6.24958 -4.27922 0.49126 0.88592 1.92882 3.04651 3.21493 3.33912 3.38768 3.66239 3.80656 4.28611 4.34674 4.43210 4.58880 4.68931 4.85875 5.09002 5.28156 5.31269 5.38805 5.60301 5.65610 5.91164 5.95239 6.00940 6.15658 6.22814 6.63218 6.67987 6.80415 6.93717 7.19065 7.24640 7.45524 7.48876 8.06904 8.43204 8.69478 8.81634 9.35499 10.86968 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.021156 B = 0.005502 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.153788 B = 5087.576068 C = 6030.588338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.244 3.756 4 H 0.053 0.947 5 C -0.537 4.537 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.692 5.692 14 C 0.543 3.457 15 O -0.519 6.519 16 C -0.156 4.156 17 C -0.036 4.036 18 C -0.144 4.144 19 C -0.110 4.110 20 C 0.129 3.871 21 N -0.482 5.482 22 C 0.210 3.790 23 Cl 0.008 6.992 24 H 0.031 0.969 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.268 0.732 30 H 0.392 0.608 31 H 0.150 0.850 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.404 4.863 -13.730 17.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C 0.141 3.859 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.183 1.183 13 N -0.341 5.341 14 C 0.327 3.673 15 O -0.397 6.397 16 C -0.162 4.162 17 C -0.062 4.062 18 C -0.147 4.147 19 C -0.167 4.167 20 C -0.028 4.028 21 N -0.192 5.192 22 C 0.045 3.955 23 Cl 0.037 6.963 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.226 0.774 31 H 0.168 0.832 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.709 5.148 -12.830 17.487 hybrid contribution 0.667 -0.856 0.489 1.190 sum -10.043 4.292 -12.341 16.479 Atomic orbital electron populations 1.21881 0.96810 0.99121 1.02355 1.22289 0.94452 0.99800 1.01160 1.19203 0.95720 0.88539 0.82471 0.92973 1.21017 0.88481 1.40008 1.07944 0.90222 1.24818 0.94863 0.95073 0.97641 1.69859 1.08699 1.44391 1.29833 0.86911 0.81027 0.79979 0.80898 1.20211 1.22143 1.18349 1.46101 1.14274 1.55542 1.18137 1.17790 0.83274 0.79780 0.86435 1.90841 1.50799 1.58859 1.39151 1.20950 0.94659 1.03303 0.97313 1.21794 0.99269 0.94363 0.90811 1.20943 0.96955 0.99776 0.96976 1.20744 0.98421 1.02955 0.94561 1.22744 0.89148 0.95169 0.95785 1.67157 1.36011 1.16724 0.99351 1.21832 0.89340 0.94136 0.90153 1.98452 1.60717 1.96125 1.41027 0.94953 0.92949 0.92716 0.92681 0.92304 0.92234 0.77386 0.83241 0.90495 0.90879 0.90672 0.81699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.51 37.16 0.32 -2.55 16 2 C -0.14 -3.00 5.11 -26.73 -0.14 -3.13 16 3 C 0.24 5.59 1.83 -69.08 -0.13 5.46 16 4 H 0.05 1.33 6.64 -51.93 -0.34 0.98 16 5 C -0.54 -14.04 9.31 -34.44 -0.32 -14.36 16 6 H 0.08 2.18 7.98 -52.48 -0.42 1.76 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -25.89 13.96 55.43 0.77 -25.12 16 9 Si 0.88 21.39 24.41 -169.99 -4.15 17.24 16 10 H -0.28 -6.48 6.83 56.52 0.39 -6.09 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 13 N -0.69 -13.18 4.98 -55.90 -0.28 -13.46 16 14 C 0.54 10.12 6.34 -12.36 -0.08 10.04 16 15 O -0.52 -10.95 11.13 5.31 0.06 -10.89 16 16 C -0.16 -2.41 5.89 -104.79 -0.62 -3.03 16 17 C -0.04 -0.43 9.32 -38.87 -0.36 -0.79 16 18 C -0.14 -1.41 5.89 -104.54 -0.62 -2.02 16 19 C -0.11 -0.69 10.03 36.01 0.36 -0.33 16 20 C 0.13 1.35 10.85 -17.47 -0.19 1.16 16 21 N -0.48 -6.72 10.33 -10.01 -0.10 -6.82 16 22 C 0.21 3.31 7.31 -17.01 -0.12 3.18 16 23 Cl 0.01 0.13 26.20 -51.86 -1.36 -1.23 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 1.02 5.64 -51.93 -0.29 0.73 16 26 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 27 H 0.06 1.26 3.21 -51.93 -0.17 1.09 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.39 6.46 6.65 -40.82 -0.27 6.19 16 31 H 0.15 1.51 6.52 -52.49 -0.34 1.17 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 34 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 298.78 15.07 4.50 4.50 Total: -1.00 -31.00 298.78 -6.50 -37.51 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -3.96 Total: 2.54 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -1.99 Total: -4.27 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.39 Total: -45.40 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.06 Total: -10.89 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.15 Total: 17.24 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -1.36 Total: -1.23 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.00 -6.50 -37.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879483588.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.973 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds