Wall clock time and date at job start Tue Mar 31 2020 06:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99792 * 2 1 4 4 C 1.52998 * 109.46994 * 179.97438 * 3 2 1 5 5 O 1.45202 * 109.47259 * 65.00217 * 4 3 2 6 6 C 1.34542 * 116.99623 * 180.02562 * 5 4 3 7 7 O 1.21437 * 120.00357 * 359.97438 * 6 5 4 8 8 O 1.34581 * 119.99598 * 179.97438 * 6 5 4 9 9 C 1.35932 * 116.99995 * 185.34658 * 8 6 5 10 10 C 1.38815 * 120.02265 * 246.55891 * 9 8 6 11 11 C 1.38194 * 120.08535 * 179.72127 * 10 9 8 12 12 C 1.38160 * 120.11870 * 0.54955 * 11 10 9 13 13 C 1.38888 * 120.03944 * 359.72557 * 12 11 10 14 14 O 1.35750 * 120.04279 * 179.97438 * 13 12 11 15 15 C 1.34828 * 117.00026 * 186.01608 * 14 13 12 16 16 H 1.08001 * 120.00266 * 354.89150 * 15 14 13 17 17 C 1.38658 * 119.99885 * 174.89726 * 15 14 13 18 18 N 1.31559 * 120.00250 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99799 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47264 * 90.00510 * 19 17 15 21 21 H 1.48507 * 109.46948 * 209.99993 * 19 17 15 22 22 H 1.48499 * 109.47339 * 329.99915 * 19 17 15 23 23 C 1.38571 * 120.02092 * 66.82964 * 9 8 6 24 24 H 1.09007 * 109.47355 * 60.00278 * 1 2 3 25 25 H 1.09008 * 109.47208 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47712 * 299.99980 * 1 2 3 27 27 H 1.08998 * 109.46929 * 59.99625 * 3 2 1 28 28 H 1.09004 * 109.47264 * 300.00061 * 3 2 1 29 29 H 1.08996 * 109.47080 * 304.99420 * 4 3 2 30 30 H 1.09005 * 109.46954 * 185.00186 * 4 3 2 31 31 H 1.07999 * 119.95617 * 359.97246 * 10 9 8 32 32 H 1.07992 * 119.94214 * 180.25055 * 11 10 9 33 33 H 1.07995 * 119.97885 * 179.69956 * 12 11 10 34 34 H 0.96991 * 120.00092 * 179.97438 * 18 17 15 35 35 H 1.07997 * 120.05335 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9727 0.5696 -1.2398 6 6 5.2965 0.3896 -1.3986 7 8 6.0657 0.7371 -0.5255 8 8 5.7683 -0.1756 -2.5252 9 6 7.1025 -0.4307 -2.5758 10 6 7.9083 0.2600 -3.4705 11 6 9.2658 0.0059 -3.5190 12 6 9.8234 -0.9443 -2.6853 13 6 9.0210 -1.6425 -1.7921 14 8 9.5688 -2.5765 -0.9733 15 6 8.7194 -3.3045 -0.2207 16 1 7.6637 -3.0764 -0.2240 17 6 9.2012 -4.3459 0.5577 18 7 8.3725 -5.0559 1.2925 19 14 11.0270 -4.7407 0.5630 20 1 11.6992 -3.9600 1.6325 21 1 11.2189 -6.1917 0.8144 22 1 11.6143 -4.3845 -0.7536 23 6 7.6582 -1.3845 -1.7381 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6884 1.8464 0.8899 28 1 1.6885 1.8465 -0.8900 29 1 3.8507 0.5687 0.8427 30 1 3.9783 2.1767 0.0903 31 1 7.4744 0.9999 -4.1267 32 1 9.8911 0.5475 -4.2131 33 1 10.8837 -1.1446 -2.7285 34 1 8.7095 -5.7846 1.8367 35 1 7.0322 -1.9256 -1.0442 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885243278.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:53 Heat of formation + Delta-G solvation = -156.458086 kcal Electronic energy + Delta-G solvation = -21506.433886 eV Core-core repulsion = 17858.023205 eV Total energy + Delta-G solvation = -3648.410682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.12381 -39.43367 -38.53908 -37.79402 -36.24917 -35.73098 -32.42729 -31.03766 -29.79997 -29.22200 -26.63552 -25.43667 -24.26522 -22.63506 -21.65658 -21.10082 -19.09651 -18.21183 -17.97229 -17.27020 -16.82615 -16.33688 -15.96995 -15.49703 -15.34280 -14.98490 -14.71842 -14.12734 -13.89708 -13.57505 -13.42022 -13.11653 -12.76604 -12.53098 -12.27645 -11.90214 -11.83639 -11.56428 -11.34963 -11.15473 -10.92452 -10.79947 -10.76416 -10.52665 -10.27832 -9.99242 -9.56578 -8.92528 -8.30509 -7.54841 -6.45232 -4.13264 1.23593 2.04187 2.23125 2.60153 3.21107 3.23844 3.37675 3.43878 4.15256 4.20553 4.40058 4.58313 4.72417 4.83754 4.97479 5.05171 5.07126 5.12573 5.13487 5.36079 5.45500 5.46114 5.64735 5.78319 5.85324 6.03027 6.31948 6.42197 6.81256 6.83861 6.90467 6.98311 7.03318 7.40426 7.70823 7.95296 8.22165 8.88249 9.45805 10.61990 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.015840 B = 0.004417 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.284159 B = 6337.461130 C = 7789.157652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.081 3.919 5 O -0.322 6.322 6 C 0.595 3.405 7 O -0.525 6.525 8 O -0.262 6.262 9 C 0.127 3.873 10 C -0.196 4.196 11 C -0.066 4.066 12 C -0.182 4.182 13 C 0.170 3.830 14 O -0.208 6.208 15 C -0.393 4.393 16 H 0.106 0.894 17 C 0.066 3.934 18 N -0.874 5.874 19 Si 0.907 3.093 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.258 1.258 23 C -0.216 4.216 24 H 0.042 0.958 25 H 0.088 0.912 26 H 0.041 0.959 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.281 0.719 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.385 12.665 -4.725 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.014 4.014 4 C 0.008 3.992 5 O -0.240 6.240 6 C 0.405 3.595 7 O -0.422 6.422 8 O -0.178 6.178 9 C 0.086 3.914 10 C -0.215 4.215 11 C -0.084 4.084 12 C -0.202 4.202 13 C 0.117 3.883 14 O -0.112 6.112 15 C -0.468 4.468 16 H 0.123 0.877 17 C -0.138 4.138 18 N -0.511 5.511 19 Si 0.732 3.268 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.182 1.182 23 C -0.236 4.236 24 H 0.061 0.939 25 H 0.107 0.893 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.091 0.909 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.012 12.277 -4.401 16.441 hybrid contribution 0.278 -0.038 0.382 0.474 sum -9.733 12.239 -4.019 16.145 Atomic orbital electron populations 1.22773 0.80688 1.03196 0.99873 1.88026 1.19958 1.26787 1.95400 1.22630 0.90864 0.86108 1.01772 1.23285 0.93130 0.99009 0.83780 1.86286 1.19905 1.75578 1.42236 1.20595 0.82127 0.75753 0.81035 1.91140 1.57511 1.51652 1.41879 1.84267 1.25121 1.72666 1.35720 1.18157 0.78164 0.96314 0.98719 1.20506 0.93181 1.03544 1.04248 1.20492 0.93435 0.96605 0.97856 1.20367 0.99982 1.00922 0.98901 1.18814 0.90325 0.89691 0.89431 1.83585 1.36254 1.43303 1.48085 1.20777 0.91799 1.11997 1.22241 0.87700 1.24483 1.00185 0.94334 0.94821 1.69649 1.35384 1.19637 1.26418 0.86155 0.83236 0.77477 0.79889 1.19761 1.20678 1.18210 1.21377 0.96290 1.02172 1.03764 0.93904 0.89319 0.94030 0.90280 0.91744 0.89352 0.88900 0.86142 0.85481 0.85662 0.90891 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.63 10.67 -38.80 -0.41 -5.04 16 3 C 0.06 0.58 6.33 37.16 0.24 0.82 16 4 C 0.08 0.98 5.85 37.16 0.22 1.20 16 5 O -0.32 -5.20 10.24 -49.01 -0.50 -5.70 16 6 C 0.60 11.38 8.71 101.05 0.88 12.26 16 7 O -0.52 -11.19 15.49 -27.41 -0.42 -11.61 16 8 O -0.26 -5.17 10.09 -32.38 -0.33 -5.50 16 9 C 0.13 2.63 5.34 -39.25 -0.21 2.42 16 10 C -0.20 -3.45 9.98 -39.38 -0.39 -3.85 16 11 C -0.07 -1.09 10.04 -39.63 -0.40 -1.49 16 12 C -0.18 -3.55 9.99 -39.37 -0.39 -3.94 16 13 C 0.17 4.02 6.64 -39.13 -0.26 3.76 16 14 O -0.21 -5.54 8.58 0.06 0.00 -5.54 16 15 C -0.39 -11.33 9.95 30.89 0.31 -11.02 16 16 H 0.11 3.16 5.44 -52.49 -0.29 2.87 16 17 C 0.07 1.87 5.49 -17.51 -0.10 1.77 16 18 N -0.87 -25.54 13.96 55.48 0.77 -24.76 16 19 Si 0.91 21.66 28.62 -169.99 -4.86 16.80 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 23 C -0.22 -5.07 8.30 -39.25 -0.33 -5.40 16 24 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.09 0.66 8.14 -51.92 -0.42 0.23 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 34 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.14 3.55 5.64 -52.49 -0.30 3.25 16 LS Contribution 317.16 15.07 4.78 4.78 Total: -1.00 -33.23 317.16 -4.24 -37.47 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -3.94 Total: 1.20 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 0.68 Total: -2.09 kcal Atomic # 7 Polarization: -25.54 SS G_CDS: 0.77 Total: -24.76 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.67 Total: -33.39 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.86 Total: 16.80 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.23 -4.24 -37.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885243278.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.987 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds