Wall clock time and date at job start Tue Mar 31 2020 06:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99792 * 2 1 4 4 C 1.52998 * 109.46994 * 179.97438 * 3 2 1 5 5 O 1.45202 * 109.47259 * 65.00217 * 4 3 2 6 6 C 1.34542 * 116.99623 * 180.02562 * 5 4 3 7 7 O 1.21437 * 120.00357 * 359.97438 * 6 5 4 8 8 O 1.34581 * 119.99598 * 179.97438 * 6 5 4 9 9 C 1.35932 * 116.99995 * 185.34658 * 8 6 5 10 10 C 1.38815 * 120.02265 * 246.55891 * 9 8 6 11 11 C 1.38194 * 120.08535 * 179.72127 * 10 9 8 12 12 C 1.38160 * 120.11870 * 0.54955 * 11 10 9 13 13 C 1.38888 * 120.03944 * 359.72557 * 12 11 10 14 14 O 1.35750 * 120.04279 * 179.97438 * 13 12 11 15 15 C 1.34828 * 117.00026 * 186.01608 * 14 13 12 16 16 H 1.08001 * 120.00266 * 354.89150 * 15 14 13 17 17 C 1.38658 * 119.99885 * 174.89726 * 15 14 13 18 18 N 1.31559 * 120.00250 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99799 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47264 * 90.00510 * 19 17 15 21 21 H 1.48507 * 109.46948 * 209.99993 * 19 17 15 22 22 H 1.48499 * 109.47339 * 329.99915 * 19 17 15 23 23 C 1.38571 * 120.02092 * 66.82964 * 9 8 6 24 24 H 1.09007 * 109.47355 * 60.00278 * 1 2 3 25 25 H 1.09008 * 109.47208 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47712 * 299.99980 * 1 2 3 27 27 H 1.08998 * 109.46929 * 59.99625 * 3 2 1 28 28 H 1.09004 * 109.47264 * 300.00061 * 3 2 1 29 29 H 1.08996 * 109.47080 * 304.99420 * 4 3 2 30 30 H 1.09005 * 109.46954 * 185.00186 * 4 3 2 31 31 H 1.07999 * 119.95617 * 359.97246 * 10 9 8 32 32 H 1.07992 * 119.94214 * 180.25055 * 11 10 9 33 33 H 1.07995 * 119.97885 * 179.69956 * 12 11 10 34 34 H 0.96991 * 120.00092 * 179.97438 * 18 17 15 35 35 H 1.07997 * 120.05335 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9727 0.5696 -1.2398 6 6 5.2965 0.3896 -1.3986 7 8 6.0657 0.7371 -0.5255 8 8 5.7683 -0.1756 -2.5252 9 6 7.1025 -0.4307 -2.5758 10 6 7.9083 0.2600 -3.4705 11 6 9.2658 0.0059 -3.5190 12 6 9.8234 -0.9443 -2.6853 13 6 9.0210 -1.6425 -1.7921 14 8 9.5688 -2.5765 -0.9733 15 6 8.7194 -3.3045 -0.2207 16 1 7.6637 -3.0764 -0.2240 17 6 9.2012 -4.3459 0.5577 18 7 8.3725 -5.0559 1.2925 19 14 11.0270 -4.7407 0.5630 20 1 11.6992 -3.9600 1.6325 21 1 11.2189 -6.1917 0.8144 22 1 11.6143 -4.3845 -0.7536 23 6 7.6582 -1.3845 -1.7381 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6884 1.8464 0.8899 28 1 1.6885 1.8465 -0.8900 29 1 3.8507 0.5687 0.8427 30 1 3.9783 2.1767 0.0903 31 1 7.4744 0.9999 -4.1267 32 1 9.8911 0.5475 -4.2131 33 1 10.8837 -1.1446 -2.7285 34 1 8.7095 -5.7846 1.8367 35 1 7.0322 -1.9256 -1.0442 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885243278.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:53 Heat of formation + Delta-G solvation = -178.787690 kcal Electronic energy + Delta-G solvation = -21507.402171 eV Core-core repulsion = 17858.023205 eV Total energy + Delta-G solvation = -3649.378966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.66067 -41.00824 -40.01391 -38.80608 -37.81561 -37.29419 -34.52157 -32.04582 -31.34837 -30.86880 -27.50407 -27.28997 -25.65339 -23.76196 -23.28458 -22.64413 -20.61196 -20.07199 -19.67579 -18.51215 -18.34008 -17.46708 -17.12002 -17.00146 -16.50952 -16.42605 -15.98265 -15.92856 -15.65502 -15.09334 -14.91116 -14.46690 -14.34932 -14.15725 -13.42166 -13.35632 -13.07629 -12.84713 -12.76088 -12.56221 -12.44683 -12.36282 -12.15773 -12.05271 -11.92108 -11.60758 -10.97228 -10.71661 -9.89604 -9.29067 -8.55657 -6.31891 -0.27626 0.45745 0.74385 1.06784 1.30486 1.36398 1.51737 2.25276 2.61217 2.71507 2.88937 2.92231 3.08213 3.73691 3.93202 3.98032 4.00257 4.15216 4.22717 4.27040 4.39596 4.44609 4.50795 4.54566 4.67267 4.79168 4.86564 4.92746 5.21395 5.28282 5.38463 5.45340 5.61548 5.76545 6.03253 6.15181 6.69313 6.76203 7.43408 8.56341 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.015840 B = 0.004417 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.284159 B = 6337.461130 C = 7789.157652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.066 3.934 4 C 0.069 3.931 5 O -0.321 6.321 6 C 0.596 3.404 7 O -0.553 6.553 8 O -0.264 6.264 9 C 0.110 3.890 10 C -0.169 4.169 11 C -0.045 4.045 12 C -0.172 4.172 13 C 0.134 3.866 14 O -0.231 6.231 15 C -0.408 4.408 16 H 0.067 0.933 17 C 0.011 3.989 18 N -0.922 5.922 19 Si 0.980 3.020 20 H -0.264 1.264 21 H -0.265 1.265 22 H -0.254 1.254 23 C -0.243 4.243 24 H 0.056 0.944 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.116 0.884 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.164 0.836 32 H 0.189 0.811 33 H 0.152 0.848 34 H 0.287 0.713 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.298 15.262 -6.945 19.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.010 4.010 4 C -0.004 4.004 5 O -0.239 6.239 6 C 0.407 3.593 7 O -0.452 6.452 8 O -0.180 6.180 9 C 0.069 3.931 10 C -0.187 4.187 11 C -0.062 4.062 12 C -0.191 4.191 13 C 0.084 3.916 14 O -0.138 6.138 15 C -0.484 4.484 16 H 0.085 0.915 17 C -0.188 4.188 18 N -0.562 5.562 19 Si 0.800 3.200 20 H -0.189 1.189 21 H -0.190 1.190 22 H -0.178 1.178 23 C -0.263 4.263 24 H 0.074 0.926 25 H 0.106 0.894 26 H 0.080 0.920 27 H 0.134 0.866 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.181 0.819 32 H 0.207 0.793 33 H 0.170 0.830 34 H 0.097 0.903 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.971 14.915 -6.654 18.634 hybrid contribution -0.266 -0.564 0.881 1.080 sum -9.236 14.351 -5.772 18.016 Atomic orbital electron populations 1.22949 0.78761 1.03778 1.01499 1.87965 1.22239 1.28579 1.95780 1.22819 0.88283 0.85597 1.04305 1.23789 0.95521 0.99448 0.81603 1.86339 1.17819 1.75554 1.44169 1.20752 0.82958 0.75157 0.80468 1.91111 1.58481 1.53021 1.42613 1.84248 1.24952 1.72787 1.36011 1.18456 0.78915 0.96464 0.99269 1.21156 0.93429 1.02029 1.02128 1.21205 0.93406 0.94768 0.96834 1.20878 1.00978 0.99974 0.97301 1.19451 0.91088 0.90243 0.90783 1.83520 1.35584 1.44936 1.49752 1.20618 0.90844 1.13244 1.23696 0.91504 1.25418 1.05339 0.93877 0.94167 1.69747 1.37669 1.20828 1.27961 0.85100 0.76821 0.78004 0.80047 1.18908 1.18983 1.17763 1.21271 0.96517 1.03771 1.04726 0.92564 0.89439 0.92023 0.86640 0.89966 0.91208 0.86520 0.81860 0.79348 0.83040 0.90310 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.43 -10.16 10.67 -145.57 -1.55 -11.71 16 3 C 0.07 1.13 6.33 71.98 0.46 1.58 16 4 C 0.07 1.66 5.85 71.98 0.42 2.08 16 5 O -0.32 -10.52 10.24 -45.95 -0.47 -10.99 16 6 C 0.60 23.41 8.71 113.37 0.99 24.39 16 7 O -0.55 -24.45 15.49 27.87 0.43 -24.02 16 8 O -0.26 -10.54 10.09 8.87 0.09 -10.45 16 9 C 0.11 4.51 5.34 22.49 0.12 4.63 16 10 C -0.17 -5.26 9.98 22.40 0.22 -5.04 16 11 C -0.04 -1.24 10.04 22.24 0.22 -1.01 16 12 C -0.17 -6.21 9.99 22.41 0.22 -5.99 16 13 C 0.13 6.47 6.64 22.56 0.15 6.62 16 14 O -0.23 -12.81 8.58 -22.72 -0.20 -13.00 16 15 C -0.41 -25.23 9.95 67.92 0.68 -24.55 16 16 H 0.07 4.50 5.44 -2.91 -0.02 4.48 16 17 C 0.01 0.64 5.49 84.83 0.47 1.11 16 18 N -0.92 -56.92 13.96 21.61 0.30 -56.62 16 19 Si 0.98 45.72 28.62 68.60 1.96 47.69 16 20 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.25 -11.52 7.11 99.48 0.71 -10.81 16 23 C -0.24 -12.01 8.30 22.48 0.19 -11.82 16 24 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 25 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.12 1.15 8.14 -2.39 -0.02 1.14 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.12 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.16 3.80 8.06 -2.91 -0.02 3.77 16 32 H 0.19 3.10 8.06 -2.91 -0.02 3.08 16 33 H 0.15 4.66 8.06 -2.91 -0.02 4.64 16 34 H 0.29 16.10 8.31 -92.72 -0.77 15.33 16 35 H 0.10 5.61 5.64 -2.91 -0.02 5.59 16 Total: -1.00 -79.50 317.16 7.06 -72.44 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 1.11 Total: 13.03 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 5.38 Total: -6.37 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 0.30 Total: -56.62 kcal Atomic # 8 Polarization: -68.47 SS G_CDS: -1.70 Total: -70.17 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.96 Total: 47.69 kcal Total: -79.50 7.06 -72.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885243278.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.347 kcal (2) G-P(sol) polarization free energy of solvation -79.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds