Wall clock time and date at job start Tue Mar 31 2020 06:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76204 * 100.00109 * 2 1 4 4 C 1.39326 * 120.49931 * 180.02562 * 3 2 1 5 5 C 1.38975 * 118.26843 * 180.02562 * 4 3 2 6 6 N 1.39099 * 120.47365 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99675 * 174.88166 * 6 5 4 8 8 O 1.21565 * 120.00235 * 4.81963 * 7 6 5 9 9 N 1.34776 * 119.99540 * 184.82102 * 7 6 5 10 10 C 1.46502 * 119.99649 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.47003 * 35.00326 * 10 9 7 12 12 C 1.52997 * 109.47039 * 274.99683 * 10 9 7 13 13 C 1.50701 * 109.46935 * 155.00050 * 10 9 7 14 14 H 1.08002 * 119.99825 * 0.02562 * 13 10 9 15 15 C 1.37872 * 120.00192 * 180.02562 * 13 10 9 16 16 N 1.31518 * 119.99814 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00376 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.46877 * 89.99781 * 17 15 13 19 19 H 1.48503 * 109.47142 * 209.99884 * 17 15 13 20 20 H 1.48494 * 109.47138 * 329.99926 * 17 15 13 21 21 N 1.33163 * 119.05211 * 0.24597 * 5 4 3 22 22 C 1.31736 * 120.91004 * 359.49203 * 21 5 4 23 23 N 1.31745 * 121.91407 * 0.52333 * 22 21 5 24 24 H 1.08994 * 109.47242 * 59.99788 * 1 2 3 25 25 H 1.08996 * 109.47115 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47008 * 300.00022 * 1 2 3 27 27 H 1.08005 * 120.86838 * 0.04101 * 4 3 2 28 28 H 0.96998 * 119.99835 * 354.59871 * 6 5 4 29 29 H 0.97003 * 120.00273 * 359.97438 * 9 7 6 30 30 H 1.08997 * 109.46738 * 179.97438 * 12 10 9 31 31 H 1.08991 * 109.47340 * 300.00079 * 12 10 9 32 32 H 1.08998 * 109.46860 * 60.00834 * 12 10 9 33 33 H 0.97001 * 119.99884 * 180.02562 * 16 15 13 34 34 H 1.07995 * 119.04202 * 180.24477 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 6 3.4210 2.2232 -0.0005 5 6 3.6089 3.6001 0.0000 6 7 4.8922 4.1370 0.0001 7 6 5.0650 5.4697 -0.1035 8 8 4.1002 6.2092 -0.1087 9 7 6.3077 5.9823 -0.2014 10 6 6.4956 7.4308 -0.3145 11 1 5.7372 7.9429 0.2777 12 6 6.3662 7.8489 -1.7806 13 6 7.8649 7.8009 0.1943 14 1 8.5290 7.0338 0.5646 15 6 8.2701 9.1188 0.1873 16 7 7.4612 10.0529 -0.2631 17 14 9.9672 9.5777 0.8187 18 1 10.9412 9.5311 -0.3013 19 1 9.9300 10.9497 1.3858 20 1 10.3793 8.6171 1.8734 21 7 2.5430 4.3982 0.0061 22 6 1.3239 3.8991 0.0014 23 7 1.1031 2.6003 0.0009 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.2647 1.5488 -0.0016 28 1 5.6623 3.5527 0.0788 29 1 7.0775 5.3922 -0.1969 30 1 6.5055 8.9266 -1.8646 31 1 7.1245 7.3368 -2.3727 32 1 5.3757 7.5812 -2.1486 33 1 7.7464 10.9801 -0.2684 34 1 0.4809 4.5742 0.0025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888954636.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:11 Heat of formation + Delta-G solvation = 30.695264 kcal Electronic energy + Delta-G solvation = -19118.533777 eV Core-core repulsion = 15985.577047 eV Total energy + Delta-G solvation = -3132.956730 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.05803 -39.25567 -35.66361 -34.47177 -33.08434 -32.38360 -31.12717 -29.20306 -28.65701 -25.28942 -24.81008 -24.10181 -21.65071 -20.01701 -18.91407 -18.52863 -16.97193 -16.49454 -15.67884 -15.60115 -15.44548 -15.13552 -14.71711 -14.41363 -14.09744 -13.87075 -13.65235 -13.31279 -12.70502 -12.42623 -11.97138 -11.52520 -11.13941 -11.11081 -10.95638 -10.78501 -10.74212 -10.55040 -10.33433 -10.25752 -9.82396 -9.07479 -8.83303 -8.78597 -8.57686 -8.02632 -7.93603 -6.14870 -4.24401 0.86121 1.07521 1.17632 1.87877 2.76790 3.22818 3.29959 3.32050 3.58907 4.03658 4.16603 4.27585 4.39468 4.79701 4.87622 4.90589 4.95901 5.17501 5.20851 5.29516 5.55248 5.98774 6.51484 6.68780 6.82489 6.95359 7.07327 7.16490 7.41346 7.58422 7.74577 7.91333 8.12185 8.20231 8.67554 8.80748 9.18981 9.43765 10.91207 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.050088 B = 0.003071 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.877573 B = 9116.150516 C = 9450.000192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.058 6.058 3 C 0.179 3.821 4 C -0.256 4.256 5 C 0.448 3.552 6 N -0.666 5.666 7 C 0.680 3.320 8 O -0.530 6.530 9 N -0.718 5.718 10 C 0.281 3.719 11 H 0.050 0.950 12 C -0.148 4.148 13 C -0.535 4.535 14 H 0.061 0.939 15 C 0.066 3.934 16 N -0.882 5.882 17 Si 0.903 3.097 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.274 1.274 21 N -0.509 5.509 22 C 0.341 3.659 23 N -0.560 5.560 24 H 0.090 0.910 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.148 0.852 28 H 0.413 0.587 29 H 0.386 0.614 30 H 0.091 0.909 31 H 0.026 0.974 32 H 0.015 0.985 33 H 0.265 0.735 34 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.036 -19.282 -0.022 21.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.179 5.821 3 C -0.076 4.076 4 C -0.290 4.290 5 C 0.205 3.795 6 N -0.314 5.314 7 C 0.379 3.621 8 O -0.401 6.401 9 N -0.370 5.370 10 C 0.180 3.820 11 H 0.068 0.932 12 C -0.207 4.207 13 C -0.573 4.573 14 H 0.080 0.920 15 C -0.137 4.137 16 N -0.520 5.520 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.199 1.199 21 N -0.230 5.230 22 C 0.048 3.952 23 N -0.282 5.282 24 H 0.109 0.891 25 H 0.119 0.881 26 H 0.109 0.891 27 H 0.165 0.835 28 H 0.249 0.751 29 H 0.218 0.782 30 H 0.110 0.890 31 H 0.045 0.955 32 H 0.035 0.965 33 H 0.075 0.925 34 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -9.864 -18.606 -0.071 21.060 hybrid contribution 1.589 0.267 0.324 1.644 sum -8.275 -18.340 0.253 20.122 Atomic orbital electron populations 1.23441 0.93546 1.05970 1.07295 1.85721 1.08376 0.97196 1.90845 1.23060 0.91222 0.99194 0.94172 1.21610 0.98131 0.94738 1.14508 1.18231 0.86096 0.87725 0.87434 1.43116 1.05283 1.08724 1.74310 1.16295 0.85696 0.80615 0.79517 1.91015 1.38780 1.56437 1.53884 1.45931 1.03980 1.11281 1.75846 1.18708 0.97247 0.72222 0.93853 0.93168 1.22105 0.96673 1.04333 0.97593 1.21194 0.99641 0.93273 1.43229 0.92046 1.24883 0.97719 0.96137 0.94959 1.69906 1.35713 1.01036 1.45298 0.86423 0.83613 0.77903 0.78999 1.20534 1.21035 1.19872 1.68623 0.98278 1.38530 1.17599 1.24945 0.93560 0.88754 0.87908 1.68710 1.33756 1.04692 1.21072 0.89084 0.88135 0.89090 0.83461 0.75090 0.78225 0.89038 0.95493 0.96548 0.92496 0.78375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 9.68 101.05 0.98 0.01 16 2 S -0.06 -0.55 22.74 -107.50 -2.44 -2.99 16 3 C 0.18 2.21 7.00 -16.55 -0.12 2.10 16 4 C -0.26 -3.18 9.81 -38.90 -0.38 -3.56 16 5 C 0.45 6.99 7.44 -154.33 -1.15 5.84 16 6 N -0.67 -10.17 5.39 -15.73 -0.08 -10.25 16 7 C 0.68 13.85 8.49 -86.91 -0.74 13.11 16 8 O -0.53 -13.12 14.31 5.31 0.08 -13.05 16 9 N -0.72 -14.67 5.07 -59.82 -0.30 -14.97 16 10 C 0.28 7.10 2.56 -69.08 -0.18 6.92 16 11 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 12 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 13 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 16 N -0.88 -24.71 11.32 55.43 0.63 -24.08 16 17 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 21 N -0.51 -8.97 8.04 -13.81 -0.11 -9.08 16 22 C 0.34 4.85 12.28 -92.25 -1.13 3.72 16 23 N -0.56 -7.34 9.30 -13.44 -0.12 -7.46 16 24 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 25 H 0.10 0.50 8.14 -51.92 -0.42 0.07 16 26 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 27 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 28 H 0.41 4.46 8.74 -40.82 -0.36 4.11 16 29 H 0.39 6.57 8.56 -40.82 -0.35 6.22 16 30 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.20 2.22 8.06 -52.49 -0.42 1.79 16 LS Contribution 311.38 15.07 4.69 4.69 Total: -1.00 -32.89 311.38 -9.37 -42.26 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -3.91 Total: 7.33 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: -2.77 Total: 12.20 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: 0.00 Total: -65.85 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.08 Total: -13.05 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: -0.55 SS G_CDS: -2.44 Total: -2.99 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.89 -9.37 -42.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888954636.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.956 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds