Wall clock time and date at job start Tue Mar 31 2020 06:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76194 * 100.00159 * 2 1 4 4 C 1.39332 * 120.49878 * 180.02562 * 3 2 1 5 5 C 1.38978 * 118.27020 * 180.02562 * 4 3 2 6 6 N 1.39095 * 120.47845 * 180.02562 * 5 4 3 7 7 C 1.34773 * 120.00114 * 174.81480 * 6 5 4 8 8 O 1.21567 * 120.00219 * 5.07810 * 7 6 5 9 9 N 1.34780 * 119.99832 * 185.07475 * 7 6 5 10 10 C 1.46494 * 119.99914 * 359.97438 * 9 7 6 11 11 C 1.46496 * 120.00015 * 180.02562 * 9 7 6 12 12 C 1.50695 * 109.47493 * 89.99757 * 11 9 7 13 13 H 1.07998 * 120.00153 * 359.97438 * 12 11 9 14 14 C 1.37875 * 120.00241 * 180.02562 * 12 11 9 15 15 N 1.31511 * 120.00299 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99903 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46911 * 89.99927 * 16 14 12 18 18 H 1.48495 * 109.47517 * 210.00080 * 16 14 12 19 19 H 1.48500 * 109.47184 * 330.00665 * 16 14 12 20 20 N 1.33162 * 119.04918 * 0.02562 * 5 4 3 21 21 C 1.31732 * 120.91275 * 359.96316 * 20 5 4 22 22 N 1.31748 * 121.91693 * 0.04126 * 21 20 5 23 23 H 1.08997 * 109.46617 * 299.99849 * 1 2 3 24 24 H 1.09000 * 109.47042 * 59.99775 * 1 2 3 25 25 H 1.09000 * 109.47263 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.86612 * 359.74940 * 4 3 2 27 27 H 0.97004 * 119.99496 * 354.80724 * 6 5 4 28 28 H 1.09003 * 109.47273 * 90.00120 * 10 9 7 29 29 H 1.08997 * 109.47435 * 210.00067 * 10 9 7 30 30 H 1.08998 * 109.47575 * 330.00495 * 10 9 7 31 31 H 1.09002 * 109.47254 * 210.00192 * 11 9 7 32 32 H 1.09010 * 109.46947 * 329.99928 * 11 9 7 33 33 H 0.97007 * 119.99846 * 179.97438 * 15 14 12 34 34 H 1.08003 * 119.04131 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.4211 2.2230 -0.0005 5 6 3.6091 3.6001 0.0000 6 7 4.8922 4.1370 -0.0010 7 6 5.0651 5.4694 -0.1059 8 8 4.1006 6.2094 -0.1067 9 7 6.3074 5.9816 -0.2100 10 6 7.4698 5.0900 -0.2084 11 6 6.4954 7.4300 -0.3234 12 6 6.6368 8.0277 1.0527 13 1 6.5907 7.3922 1.9247 14 6 6.8238 9.3859 1.1986 15 7 6.9476 9.9073 2.3996 16 14 6.9028 10.4852 -0.3097 17 1 5.5371 10.9608 -0.6476 18 1 7.7773 11.6515 -0.0269 19 1 7.4565 9.7170 -1.4536 20 7 2.5431 4.3981 0.0016 21 6 1.3240 3.8990 0.0019 22 7 1.1031 2.6002 0.0014 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 4.2647 1.5487 0.0031 27 1 5.6626 3.5523 0.0739 28 1 7.7029 4.7951 -1.2316 29 1 8.3253 5.6090 0.2238 30 1 7.2462 4.2025 0.3835 31 1 7.3956 7.6353 -0.9029 32 1 5.6329 7.8703 -0.8239 33 1 7.0796 10.8629 2.5021 34 1 0.4810 4.5742 0.0027 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888960186.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:00 Heat of formation + Delta-G solvation = 48.723653 kcal Electronic energy + Delta-G solvation = -19334.156324 eV Core-core repulsion = 16201.981364 eV Total energy + Delta-G solvation = -3132.174960 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.09161 -39.43895 -35.62963 -34.76960 -33.03065 -32.49725 -31.12515 -29.18380 -28.42490 -26.16645 -24.75948 -24.15036 -22.34375 -19.97400 -19.03099 -17.56431 -17.06502 -16.98669 -15.98850 -15.62279 -15.50392 -15.15745 -14.68604 -14.53849 -14.00144 -13.84237 -13.66942 -13.33553 -12.91764 -12.71008 -12.43994 -12.12760 -11.58258 -11.49556 -11.12405 -10.95884 -10.77208 -10.57924 -10.52659 -10.16815 -9.83587 -9.52760 -8.81927 -8.79141 -8.59577 -8.01926 -7.77012 -6.09394 -4.08634 0.86645 1.07508 1.17878 1.88283 2.70963 3.29483 3.35200 3.37622 3.55571 4.01009 4.03992 4.24830 4.38959 4.57781 4.80069 4.88263 4.96638 5.13138 5.23484 5.26292 5.37032 5.56010 5.69714 5.97855 5.99777 6.32904 6.64624 6.72955 6.88705 7.15529 7.34203 7.58804 8.09857 8.38495 8.46097 8.93189 9.07981 9.50313 11.04017 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.038127 B = 0.003538 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.217467 B = 7911.481226 C = 8266.226046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.058 6.058 3 C 0.179 3.821 4 C -0.255 4.255 5 C 0.447 3.553 6 N -0.665 5.665 7 C 0.688 3.312 8 O -0.515 6.515 9 N -0.607 5.607 10 C 0.082 3.918 11 C 0.231 3.769 12 C -0.531 4.531 13 H 0.074 0.926 14 C 0.073 3.927 15 N -0.897 5.897 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.266 1.266 20 N -0.508 5.508 21 C 0.342 3.658 22 N -0.559 5.559 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.100 0.900 26 H 0.147 0.853 27 H 0.412 0.588 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.034 0.966 32 H 0.039 0.961 33 H 0.265 0.735 34 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.799 -20.664 -6.788 22.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.179 5.821 3 C -0.076 4.076 4 C -0.289 4.289 5 C 0.205 3.795 6 N -0.315 5.315 7 C 0.388 3.612 8 O -0.384 6.384 9 N -0.344 5.344 10 C -0.062 4.062 11 C 0.111 3.889 12 C -0.570 4.570 13 H 0.092 0.908 14 C -0.130 4.130 15 N -0.535 5.535 16 Si 0.704 3.296 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.190 1.190 20 N -0.230 5.230 21 C 0.049 3.951 22 N -0.282 5.282 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.119 0.881 26 H 0.165 0.835 27 H 0.251 0.749 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -7.395 -20.185 -6.715 22.521 hybrid contribution 0.454 0.907 -0.463 1.115 sum -6.941 -19.278 -7.179 21.711 Atomic orbital electron populations 1.23444 0.93522 1.05972 1.07314 1.85703 1.08404 0.97162 1.90846 1.23056 0.91195 0.99212 0.94148 1.21588 0.98140 0.94650 1.14565 1.18229 0.86039 0.87768 0.87501 1.43170 1.05381 1.08683 1.74260 1.15975 0.84915 0.80735 0.79569 1.91033 1.38230 1.56393 1.52781 1.47208 1.02756 1.09144 1.75270 1.21649 0.90615 0.93693 1.00270 1.19638 0.97055 0.73996 0.98240 1.21337 1.50253 0.93422 0.91967 0.90793 1.24849 0.94466 0.97751 0.95906 1.69898 1.49443 1.12508 1.21674 0.86842 0.78695 0.80639 0.83435 1.19812 1.21075 1.19048 1.68625 0.98310 1.38540 1.17513 1.24953 0.93542 0.88745 0.87811 1.68714 1.33742 1.04690 1.21019 0.89058 0.89093 0.88131 0.83491 0.74897 0.93364 0.89830 0.93007 0.94856 0.94290 0.92524 0.78323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.98 9.68 101.05 0.98 -0.01 16 2 S -0.06 -0.55 22.73 -107.50 -2.44 -2.99 16 3 C 0.18 2.25 7.00 -16.55 -0.12 2.13 16 4 C -0.26 -3.22 9.81 -38.90 -0.38 -3.61 16 5 C 0.45 7.17 7.45 -154.33 -1.15 6.02 16 6 N -0.66 -10.58 5.26 -15.73 -0.08 -10.66 16 7 C 0.69 14.46 8.24 -86.92 -0.72 13.75 16 8 O -0.52 -13.17 14.23 5.31 0.08 -13.10 16 9 N -0.61 -12.35 2.86 -188.75 -0.54 -12.89 16 10 C 0.08 1.17 10.25 59.84 0.61 1.78 16 11 C 0.23 5.60 4.23 -5.20 -0.02 5.58 16 12 C -0.53 -15.23 9.94 -34.44 -0.34 -15.57 16 13 H 0.07 2.34 8.06 -52.49 -0.42 1.91 16 14 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 15 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 16 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 17 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 20 N -0.51 -9.21 8.04 -13.81 -0.11 -9.32 16 21 C 0.34 4.99 12.28 -92.25 -1.13 3.86 16 22 N -0.56 -7.47 9.30 -13.44 -0.12 -7.59 16 23 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 24 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 25 H 0.10 0.51 8.14 -51.92 -0.42 0.08 16 26 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 27 H 0.41 4.81 6.41 -40.82 -0.26 4.54 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 30 H 0.05 0.58 6.29 -51.93 -0.33 0.25 16 31 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 32 H 0.04 1.01 6.85 -51.92 -0.36 0.66 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.20 2.30 8.06 -52.48 -0.42 1.88 16 LS Contribution 308.73 15.07 4.65 4.65 Total: -1.00 -36.36 308.73 -8.69 -45.05 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -3.86 Total: 1.03 kcal Atomic # 6 Polarization: 18.32 SS G_CDS: -2.37 Total: 15.96 kcal Atomic # 7 Polarization: -67.32 SS G_CDS: -0.08 Total: -67.40 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 16 Polarization: -0.55 SS G_CDS: -2.44 Total: -2.99 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -36.36 -8.69 -45.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888960186.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.774 kcal (2) G-P(sol) polarization free energy of solvation -36.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds