Wall clock time and date at job start Tue Mar 31 2020 05:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34821 * 116.99639 * 2 1 4 4 O 1.21521 * 120.00201 * 359.97438 * 3 2 1 5 5 C 1.47176 * 119.99699 * 180.02562 * 3 2 1 6 6 C 1.36649 * 125.80672 * 179.97438 * 5 3 2 7 7 C 1.40024 * 106.92883 * 179.97438 * 6 5 3 8 8 C 1.50696 * 126.53763 * 179.97438 * 7 6 5 9 9 C 1.36641 * 106.92437 * 0.02562 * 7 6 5 10 10 C 1.47178 * 125.80371 * 180.02562 * 9 7 6 11 11 O 1.21529 * 119.99835 * 0.02562 * 10 9 7 12 12 O 1.34820 * 119.99892 * 179.97438 * 10 9 7 13 13 C 1.45199 * 116.99938 * 180.02562 * 12 10 9 14 14 H 1.09005 * 109.46991 * 29.99418 * 13 12 10 15 15 C 1.52999 * 109.46940 * 269.99957 * 13 12 10 16 16 C 1.50699 * 109.47427 * 149.99957 * 13 12 10 17 17 H 1.07996 * 119.99713 * 359.97438 * 16 13 12 18 18 C 1.37875 * 119.99971 * 179.97438 * 16 13 12 19 19 N 1.31511 * 120.00106 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99713 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47346 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46843 * 120.00155 * 20 18 16 23 23 H 1.48500 * 109.47179 * 239.99985 * 20 18 16 24 24 O 1.34554 * 125.80797 * 359.68939 * 5 3 2 25 25 H 1.09005 * 109.46867 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47370 * 300.00071 * 1 2 3 27 27 H 1.08994 * 109.47072 * 60.00280 * 1 2 3 28 28 H 1.07999 * 126.53136 * 359.93044 * 6 5 3 29 29 H 1.09001 * 109.47021 * 90.02228 * 8 7 6 30 30 H 1.08998 * 109.47234 * 210.02801 * 8 7 6 31 31 H 1.09003 * 109.46726 * 330.02412 * 8 7 6 32 32 H 1.09007 * 109.47371 * 60.00175 * 15 13 12 33 33 H 1.09004 * 109.47154 * 179.97438 * 15 13 12 34 34 H 1.08997 * 109.47549 * 299.99994 * 15 13 12 35 35 H 0.97003 * 119.99618 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2013 0.0000 4 8 1.4021 2.2204 -0.0005 5 6 3.5337 1.2783 -0.0006 6 6 4.2741 2.4269 -0.0011 7 6 5.6209 2.0438 -0.0009 8 6 6.8151 2.9630 -0.0019 9 6 5.6459 0.6776 -0.0009 10 6 6.8551 -0.1614 -0.0001 11 8 7.9543 0.3569 0.0009 12 8 6.7432 -1.5050 0.0004 13 6 7.9778 -2.2692 0.0017 14 1 8.7549 -1.7033 0.5158 15 6 8.4125 -2.5382 -1.4404 16 6 7.7569 -3.5795 0.7125 17 1 6.7858 -3.8142 1.1227 18 6 8.7945 -4.4786 0.8392 19 7 9.9768 -4.1929 0.3392 20 14 8.5207 -6.1024 1.7209 21 1 7.1130 -6.1815 2.1870 22 1 8.7966 -7.2247 0.7883 23 1 9.4348 -6.1924 2.8878 24 8 4.3770 0.2299 0.0048 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.8930 3.4374 -0.0023 29 1 7.1034 3.1852 1.0255 30 1 7.6456 2.4791 -0.5158 31 1 6.5599 3.8895 -0.5162 32 1 8.5725 -1.5905 -1.9546 33 1 9.3396 -3.1116 -1.4395 34 1 7.6356 -3.1040 -1.9546 35 1 10.7069 -4.8254 0.4287 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892690005.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:10 Heat of formation + Delta-G solvation = -155.241614 kcal Electronic energy + Delta-G solvation = -21730.904751 eV Core-core repulsion = 18082.546820 eV Total energy + Delta-G solvation = -3648.357931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.97668 -40.46951 -39.47444 -36.83789 -36.09874 -34.23031 -33.33041 -31.27812 -29.69361 -28.33839 -27.63451 -25.39718 -24.94679 -22.46443 -21.31204 -20.71477 -19.83745 -18.17381 -17.73749 -17.20648 -17.10740 -16.67497 -16.17925 -15.81377 -14.85393 -14.64697 -14.36358 -13.92513 -13.54345 -13.42583 -13.14832 -13.08657 -12.78429 -12.45690 -12.33113 -12.09608 -12.00121 -11.32091 -11.17875 -11.13164 -11.12528 -10.90265 -10.43178 -10.34152 -10.07803 -9.94363 -9.69820 -8.99934 -8.90153 -8.55056 -6.23719 -4.30618 0.34509 1.60008 1.95210 2.58663 2.61141 3.17921 3.21990 3.28351 3.32736 3.45819 4.28457 4.45609 4.48121 4.82340 4.91865 5.03626 5.07776 5.11383 5.24780 5.27208 5.62608 5.67893 5.73061 5.89764 5.93640 6.22845 6.48606 6.59835 6.79442 6.81674 6.96413 7.32423 7.47538 7.62772 7.79928 8.04254 8.38616 8.78531 9.34871 10.83859 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.018153 B = 0.004354 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.116079 B = 6428.862068 C = 7679.062913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.342 6.342 3 C 0.557 3.443 4 O -0.485 6.485 5 C -0.039 4.039 6 C -0.116 4.116 7 C -0.112 4.112 8 C -0.094 4.094 9 C 0.006 3.994 10 C 0.536 3.464 11 O -0.483 6.483 12 O -0.339 6.339 13 C 0.214 3.786 14 H 0.051 0.949 15 C -0.157 4.157 16 C -0.522 4.522 17 H 0.071 0.929 18 C 0.064 3.936 19 N -0.889 5.889 20 Si 0.913 3.087 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.281 1.281 24 O -0.120 6.120 25 H 0.107 0.893 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.173 0.827 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.018 0.982 33 H 0.102 0.898 34 H 0.039 0.961 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.303 11.139 -1.369 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.257 6.257 3 C 0.401 3.599 4 O -0.374 6.374 5 C -0.091 4.091 6 C -0.135 4.135 7 C -0.114 4.114 8 C -0.151 4.151 9 C -0.048 4.048 10 C 0.379 3.621 11 O -0.374 6.374 12 O -0.254 6.254 13 C 0.163 3.837 14 H 0.069 0.931 15 C -0.214 4.214 16 C -0.560 4.560 17 H 0.090 0.910 18 C -0.139 4.139 19 N -0.526 5.526 20 Si 0.740 3.260 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.207 1.207 24 O -0.014 6.014 25 H 0.126 0.874 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.190 0.810 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.037 0.963 33 H 0.121 0.879 34 H 0.058 0.942 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.097 11.098 -1.387 17.222 hybrid contribution -0.221 -0.740 0.393 0.867 sum -13.317 10.358 -0.994 16.900 Atomic orbital electron populations 1.23402 0.75096 1.04420 1.02807 1.86707 1.24138 1.31350 1.83543 1.19265 0.85271 0.82257 0.73118 1.90918 1.64218 1.35964 1.46331 1.20940 0.88193 0.86438 1.13516 1.21803 0.91281 0.99044 1.01400 1.20603 0.96105 0.92111 1.02568 1.20472 0.94106 0.97034 1.03462 1.21669 0.81959 0.92583 1.08559 1.19256 0.85119 0.83423 0.74350 1.90850 1.25233 1.74830 1.46493 1.86686 1.42703 1.15264 1.80757 1.20845 0.78310 0.89419 0.95168 0.93078 1.22196 1.03737 0.99254 0.96243 1.21051 0.98235 1.00170 1.36532 0.91047 1.24876 0.94613 0.98857 0.95515 1.69898 1.01548 1.36495 1.44706 0.86190 0.78572 0.82096 0.79138 1.19406 1.20653 1.20689 1.84284 1.14721 1.33663 1.68766 0.87429 0.91458 0.91461 0.80988 0.90306 0.88979 0.91027 0.96333 0.87918 0.94173 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.36 16 2 O -0.34 -4.33 10.58 -42.24 -0.45 -4.77 16 3 C 0.56 7.51 7.95 34.36 0.27 7.78 16 4 O -0.49 -6.77 16.65 -19.28 -0.32 -7.09 16 5 C -0.04 -0.56 7.19 -36.53 -0.26 -0.82 16 6 C -0.12 -1.46 10.55 -39.49 -0.42 -1.88 16 7 C -0.11 -1.60 6.18 -104.53 -0.65 -2.25 16 8 C -0.09 -1.14 9.80 36.00 0.35 -0.78 16 9 C 0.01 0.10 7.19 -36.53 -0.26 -0.16 16 10 C 0.54 11.36 7.93 34.36 0.27 11.63 16 11 O -0.48 -10.66 13.97 -19.29 -0.27 -10.93 16 12 O -0.34 -8.19 9.88 -42.24 -0.42 -8.61 16 13 C 0.21 5.67 2.57 -27.88 -0.07 5.60 16 14 H 0.05 1.45 7.16 -51.93 -0.37 1.08 16 15 C -0.16 -3.89 9.33 37.16 0.35 -3.54 16 16 C -0.52 -14.53 8.90 -34.44 -0.31 -14.84 16 17 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -24.75 11.32 55.43 0.63 -24.12 16 20 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 O -0.12 -2.08 10.68 1.26 0.01 -2.06 16 25 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 1.28 6.43 -51.93 -0.33 0.95 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.10 2.71 6.07 -51.93 -0.32 2.39 16 34 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 318.20 15.07 4.80 4.80 Total: -1.00 -30.61 318.20 -4.73 -35.35 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -3.95 Total: -2.14 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 0.25 Total: 3.74 kcal Atomic # 7 Polarization: -24.75 SS G_CDS: 0.63 Total: -24.12 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -1.44 Total: -33.47 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.61 -4.73 -35.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892690005.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.895 kcal (2) G-P(sol) polarization free energy of solvation -30.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds