Wall clock time and date at job start Tue Mar 31 2020 05:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34821 * 116.99639 * 2 1 4 4 O 1.21521 * 120.00201 * 359.97438 * 3 2 1 5 5 C 1.47176 * 119.99699 * 180.02562 * 3 2 1 6 6 C 1.36649 * 125.80672 * 179.97438 * 5 3 2 7 7 C 1.40024 * 106.92883 * 179.97438 * 6 5 3 8 8 C 1.50696 * 126.53763 * 179.97438 * 7 6 5 9 9 C 1.36641 * 106.92437 * 0.02562 * 7 6 5 10 10 C 1.47178 * 125.80371 * 180.02562 * 9 7 6 11 11 O 1.21529 * 119.99835 * 0.02562 * 10 9 7 12 12 O 1.34820 * 119.99892 * 179.97438 * 10 9 7 13 13 C 1.45199 * 116.99938 * 180.02562 * 12 10 9 14 14 H 1.09005 * 109.46991 * 29.99418 * 13 12 10 15 15 C 1.52999 * 109.46940 * 269.99957 * 13 12 10 16 16 C 1.50699 * 109.47427 * 149.99957 * 13 12 10 17 17 H 1.07996 * 119.99713 * 359.97438 * 16 13 12 18 18 C 1.37875 * 119.99971 * 179.97438 * 16 13 12 19 19 N 1.31511 * 120.00106 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99713 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47346 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46843 * 120.00155 * 20 18 16 23 23 H 1.48500 * 109.47179 * 239.99985 * 20 18 16 24 24 O 1.34554 * 125.80797 * 359.68939 * 5 3 2 25 25 H 1.09005 * 109.46867 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47370 * 300.00071 * 1 2 3 27 27 H 1.08994 * 109.47072 * 60.00280 * 1 2 3 28 28 H 1.07999 * 126.53136 * 359.93044 * 6 5 3 29 29 H 1.09001 * 109.47021 * 90.02228 * 8 7 6 30 30 H 1.08998 * 109.47234 * 210.02801 * 8 7 6 31 31 H 1.09003 * 109.46726 * 330.02412 * 8 7 6 32 32 H 1.09007 * 109.47371 * 60.00175 * 15 13 12 33 33 H 1.09004 * 109.47154 * 179.97438 * 15 13 12 34 34 H 1.08997 * 109.47549 * 299.99994 * 15 13 12 35 35 H 0.97003 * 119.99618 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2013 0.0000 4 8 1.4021 2.2204 -0.0005 5 6 3.5337 1.2783 -0.0006 6 6 4.2741 2.4269 -0.0011 7 6 5.6209 2.0438 -0.0009 8 6 6.8151 2.9630 -0.0019 9 6 5.6459 0.6776 -0.0009 10 6 6.8551 -0.1614 -0.0001 11 8 7.9543 0.3569 0.0009 12 8 6.7432 -1.5050 0.0004 13 6 7.9778 -2.2692 0.0017 14 1 8.7549 -1.7033 0.5158 15 6 8.4125 -2.5382 -1.4404 16 6 7.7569 -3.5795 0.7125 17 1 6.7858 -3.8142 1.1227 18 6 8.7945 -4.4786 0.8392 19 7 9.9768 -4.1929 0.3392 20 14 8.5207 -6.1024 1.7209 21 1 7.1130 -6.1815 2.1870 22 1 8.7966 -7.2247 0.7883 23 1 9.4348 -6.1924 2.8878 24 8 4.3770 0.2299 0.0048 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.8930 3.4374 -0.0023 29 1 7.1034 3.1852 1.0255 30 1 7.6456 2.4791 -0.5158 31 1 6.5599 3.8895 -0.5162 32 1 8.5725 -1.5905 -1.9546 33 1 9.3396 -3.1116 -1.4395 34 1 7.6356 -3.1040 -1.9546 35 1 10.7069 -4.8254 0.4287 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892690005.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:09 Heat of formation + Delta-G solvation = -172.834946 kcal Electronic energy + Delta-G solvation = -21731.667655 eV Core-core repulsion = 18082.546820 eV Total energy + Delta-G solvation = -3649.120835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.18252 -41.51877 -41.16802 -37.89599 -37.80781 -35.52691 -35.27598 -32.52825 -31.61906 -29.18422 -28.76044 -27.48168 -26.15173 -23.98572 -22.47764 -22.29749 -21.24137 -19.54974 -19.04794 -18.61281 -18.26724 -18.24255 -17.66095 -17.33989 -16.51663 -16.48259 -15.50760 -15.04708 -14.81414 -14.44146 -14.43276 -14.29194 -14.12403 -13.97113 -13.86404 -13.27792 -13.20377 -13.10908 -13.04352 -12.83059 -12.42579 -12.18519 -12.16996 -11.95631 -11.71572 -11.68127 -11.05298 -11.02102 -10.62997 -10.14209 -8.31184 -6.47827 -0.88671 0.40917 0.83860 1.39181 1.42616 1.45696 1.52088 1.57768 1.63725 2.00206 2.39529 2.99840 3.36312 3.41195 3.68562 3.98544 4.07394 4.22378 4.32394 4.36978 4.47560 4.69045 4.74930 4.75457 4.76213 4.80227 4.91306 4.98181 5.03348 5.21276 5.42060 5.46726 5.56720 5.79267 5.97517 6.32233 6.50661 6.73111 7.22863 8.76804 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.018153 B = 0.004354 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.116079 B = 6428.862068 C = 7679.062913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.560 3.440 4 O -0.488 6.488 5 C -0.039 4.039 6 C -0.099 4.099 7 C -0.084 4.084 8 C -0.096 4.096 9 C -0.038 4.038 10 C 0.533 3.467 11 O -0.501 6.501 12 O -0.355 6.355 13 C 0.216 3.784 14 H 0.021 0.979 15 C -0.144 4.144 16 C -0.552 4.552 17 H 0.064 0.936 18 C 0.021 3.979 19 N -0.913 5.913 20 Si 0.982 3.018 21 H -0.267 1.267 22 H -0.270 1.270 23 H -0.273 1.273 24 O -0.144 6.144 25 H 0.131 0.869 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.211 0.789 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.029 0.971 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.895 12.059 -1.145 19.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.405 3.595 4 O -0.378 6.378 5 C -0.091 4.091 6 C -0.118 4.118 7 C -0.086 4.086 8 C -0.153 4.153 9 C -0.090 4.090 10 C 0.378 3.622 11 O -0.393 6.393 12 O -0.271 6.271 13 C 0.164 3.836 14 H 0.039 0.961 15 C -0.202 4.202 16 C -0.589 4.589 17 H 0.082 0.918 18 C -0.179 4.179 19 N -0.551 5.551 20 Si 0.806 3.194 21 H -0.191 1.191 22 H -0.195 1.195 23 H -0.198 1.198 24 O -0.040 6.040 25 H 0.149 0.851 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.228 0.772 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.129 0.871 32 H 0.048 0.952 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.696 12.037 -1.171 19.032 hybrid contribution 0.154 -0.906 0.316 0.972 sum -14.543 11.131 -0.855 18.333 Atomic orbital electron populations 1.23779 0.72638 1.06400 1.03704 1.86696 1.26634 1.30965 1.83113 1.19126 0.84852 0.82525 0.73044 1.90913 1.64131 1.36095 1.46684 1.21469 0.88738 0.86508 1.12380 1.22198 0.89810 1.00125 0.99647 1.21004 0.97761 0.90762 0.99032 1.20609 0.92398 0.97827 1.04419 1.21200 0.81242 0.93075 1.13503 1.19704 0.86559 0.82462 0.73475 1.90822 1.26380 1.74717 1.47350 1.86656 1.41462 1.17231 1.81754 1.20575 0.78536 0.89030 0.95465 0.96139 1.22021 1.02921 0.99578 0.95665 1.21283 0.98410 1.01326 1.37895 0.91799 1.25768 0.94072 1.02233 0.95825 1.69996 1.02257 1.37794 1.45022 0.85141 0.78600 0.77560 0.78145 1.19096 1.19497 1.19840 1.84230 1.14806 1.35056 1.69890 0.85055 0.90596 0.90525 0.77163 0.89092 0.91190 0.87122 0.95191 0.89506 0.93722 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.57 113.37 1.20 1.58 16 2 O -0.36 -8.62 10.58 -55.98 -0.59 -9.21 16 3 C 0.56 14.17 7.95 70.17 0.56 14.73 16 4 O -0.49 -12.43 16.65 19.77 0.33 -12.10 16 5 C -0.04 -1.07 7.19 24.25 0.17 -0.90 16 6 C -0.10 -2.21 10.55 22.33 0.24 -1.97 16 7 C -0.08 -2.26 6.18 -19.81 -0.12 -2.38 16 8 C -0.10 -2.11 9.80 71.23 0.70 -1.41 16 9 C -0.04 -1.37 7.19 24.25 0.17 -1.19 16 10 C 0.53 23.53 7.93 70.17 0.56 24.09 16 11 O -0.50 -23.02 13.97 19.74 0.28 -22.74 16 12 O -0.35 -17.98 9.88 -55.96 -0.55 -18.54 16 13 C 0.22 11.95 2.57 29.85 0.08 12.03 16 14 H 0.02 1.25 7.16 -2.38 -0.02 1.23 16 15 C -0.14 -7.39 9.33 71.98 0.67 -6.72 16 16 C -0.55 -31.62 8.90 25.60 0.23 -31.40 16 17 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 18 C 0.02 1.16 5.30 84.65 0.45 1.61 16 19 N -0.91 -51.59 11.32 21.45 0.24 -51.35 16 20 Si 0.98 42.80 29.54 68.60 2.03 44.83 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 O -0.14 -5.01 10.68 -4.51 -0.05 -5.06 16 25 H 0.13 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 28 H 0.21 3.03 8.06 -2.91 -0.02 3.00 16 29 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 1.90 6.43 -2.39 -0.02 1.89 16 31 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.09 4.72 6.07 -2.38 -0.01 4.71 16 34 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -67.86 318.20 7.70 -60.16 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 1.12 Total: 5.93 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 4.90 Total: 8.08 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.24 Total: -51.35 kcal Atomic # 8 Polarization: -67.06 SS G_CDS: -0.59 Total: -67.65 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -67.86 7.70 -60.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892690005.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.674 kcal (2) G-P(sol) polarization free energy of solvation -67.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds