Wall clock time and date at job start Tue Mar 31 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47218 * 2 1 4 4 C 1.46504 * 119.99872 * 93.73168 * 3 2 1 5 5 C 1.50700 * 109.46880 * 90.00024 * 4 3 2 6 6 H 1.07995 * 120.00171 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99857 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99969 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00140 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47127 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47284 * 119.99669 * 9 7 5 12 12 H 1.48500 * 109.47383 * 240.00113 * 9 7 5 13 13 C 1.34775 * 120.00323 * 273.73523 * 3 2 1 14 14 O 1.21508 * 120.00084 * 185.43770 * 13 3 2 15 15 C 1.48167 * 119.99657 * 5.43669 * 13 3 2 16 16 C 1.39272 * 119.71046 * 186.09873 * 15 13 3 17 17 C 1.38631 * 119.08865 * 180.02562 * 16 15 13 18 18 C 1.50693 * 120.74973 * 180.02562 * 17 16 15 19 19 C 1.38565 * 118.50346 * 359.97438 * 17 16 15 20 20 C 1.38726 * 119.34430 * 0.02562 * 19 17 16 21 21 Cl 1.73597 * 119.56968 * 180.02562 * 20 19 17 22 22 N 1.31621 * 120.86882 * 359.72530 * 20 19 17 23 23 H 1.09003 * 109.46892 * 59.99495 * 1 2 3 24 24 H 1.08993 * 109.47316 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47169 * 299.99880 * 1 2 3 26 26 H 1.08990 * 109.46990 * 240.00395 * 2 1 3 27 27 H 1.09000 * 109.47237 * 119.99830 * 2 1 3 28 28 H 1.08998 * 109.47413 * 210.00540 * 4 3 2 29 29 H 1.09006 * 109.46884 * 330.00458 * 4 3 2 30 30 H 0.96997 * 119.99973 * 180.02562 * 8 7 5 31 31 H 1.07993 * 120.45919 * 0.02562 * 16 15 13 32 32 H 1.09001 * 109.47342 * 89.99467 * 18 17 16 33 33 H 1.09002 * 109.47452 * 209.99914 * 18 17 16 34 34 H 1.09005 * 109.47203 * 329.99945 * 18 17 16 35 35 H 1.07996 * 120.32883 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3404 2.0443 1.2661 5 6 3.7875 1.7990 1.6077 6 1 4.4056 1.2087 0.9476 7 6 4.3224 2.3283 2.7630 8 7 3.5698 3.0476 3.5667 9 14 6.1164 2.0249 3.1862 10 1 6.7408 1.1920 2.1269 11 1 6.8295 3.3241 3.2796 12 1 6.2049 1.3167 4.4884 13 6 2.1714 2.0420 -1.1647 14 8 2.6687 3.1506 -1.1735 15 6 1.7330 1.4165 -2.4343 16 6 2.0084 2.0467 -3.6454 17 6 1.5919 1.4503 -4.8255 18 6 1.8703 2.0991 -6.1568 19 6 0.9147 0.2435 -4.7534 20 6 0.6745 -0.3281 -3.5124 21 17 -0.1728 -1.8402 -3.4153 22 7 1.0856 0.2579 -2.4079 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5137 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 2.1664 3.1160 1.1696 29 1 1.7072 1.6432 2.0576 30 1 3.9462 3.4203 4.3793 31 1 2.5390 2.9871 -3.6649 32 1 2.8302 1.7502 -6.5374 33 1 1.0821 1.8348 -6.8618 34 1 1.9000 3.1819 -6.0342 35 1 0.5772 -0.2471 -5.6543 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930463990.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:43 Heat of formation + Delta-G solvation = 5.840997 kcal Electronic energy + Delta-G solvation = -19925.593114 eV Core-core repulsion = 16757.222165 eV Total energy + Delta-G solvation = -3168.370949 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.74109 -38.50453 -36.75097 -35.47803 -34.14613 -32.68305 -31.18547 -29.93336 -28.10856 -27.29346 -24.55937 -22.89233 -22.80937 -22.04660 -18.96568 -17.21576 -16.81218 -16.38292 -16.11209 -15.32691 -15.16999 -15.01653 -14.27347 -13.97335 -13.60763 -13.38458 -13.13244 -12.84444 -12.68861 -12.32987 -12.05413 -11.78391 -11.64762 -11.47558 -11.39329 -11.17220 -10.83951 -10.64242 -10.47854 -10.12566 -9.76090 -9.62933 -9.51674 -9.07070 -8.92622 -8.41609 -7.63307 -6.02261 -4.06638 0.58946 0.93763 1.65941 3.02217 3.31990 3.39113 3.43700 3.71466 3.97898 4.23447 4.45495 4.61100 4.71732 4.77951 4.94289 5.22772 5.28439 5.32892 5.40812 5.57344 5.72081 5.77374 5.99969 6.02317 6.12478 6.27642 6.45466 6.57781 6.87086 7.08026 7.42732 7.45366 7.60208 7.94055 8.24254 8.39195 8.85866 9.02798 9.58013 11.05924 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.004912 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.535950 B = 5699.072611 C = 6427.363437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.113 3.887 3 N -0.570 5.570 4 C 0.244 3.756 5 C -0.523 4.523 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.552 3.448 14 O -0.531 6.531 15 C 0.116 3.884 16 C -0.115 4.115 17 C -0.039 4.039 18 C -0.114 4.114 19 C -0.147 4.147 20 C 0.167 3.833 21 Cl -0.033 7.033 22 N -0.441 5.441 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.037 0.963 30 H 0.263 0.737 31 H 0.154 0.846 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.463 -7.458 -18.230 21.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 N -0.299 5.299 4 C 0.125 3.875 5 C -0.562 4.562 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.336 3.664 14 O -0.408 6.408 15 C -0.023 4.023 16 C -0.136 4.136 17 C -0.047 4.047 18 C -0.171 4.171 19 C -0.168 4.168 20 C 0.001 3.999 21 Cl -0.004 7.004 22 N -0.156 5.156 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.172 0.828 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.417 -7.281 -17.174 20.074 hybrid contribution 0.967 -0.088 -0.347 1.032 sum -6.450 -7.369 -17.521 20.073 Atomic orbital electron populations 1.22047 0.96570 1.01011 1.01103 1.21685 0.94006 0.82880 1.02514 1.48224 1.60680 1.13726 1.07275 1.19394 0.96076 0.93957 0.78048 1.21447 0.95585 1.32840 1.06350 0.92344 1.24928 0.98141 0.94927 0.96089 1.69943 1.35941 1.34560 1.12973 0.86432 0.84805 0.78021 0.78102 1.19813 1.20871 1.20964 1.17702 0.80491 0.85568 0.82631 1.90772 1.44499 1.19765 1.85761 1.21640 0.95156 0.89961 0.95504 1.22148 0.98864 1.01622 0.90981 1.20290 0.94617 0.93514 0.96311 1.20833 1.02815 1.01201 0.92237 1.21820 1.01104 0.96375 0.97473 1.21736 0.97187 0.90770 0.90184 1.98403 1.74974 1.28426 1.98615 1.67760 1.09647 1.08986 1.29167 0.92507 0.92696 0.93532 0.89460 0.91091 0.93867 0.94535 0.92776 0.82795 0.90069 0.90731 0.90372 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.54 37.16 0.35 -2.07 16 2 C 0.11 2.10 5.67 -4.04 -0.02 2.08 16 3 N -0.57 -12.88 2.46 -176.05 -0.43 -13.31 16 4 C 0.24 6.54 5.10 -5.19 -0.03 6.51 16 5 C -0.52 -15.11 9.39 -34.44 -0.32 -15.44 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 9 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.55 12.15 7.62 -12.18 -0.09 12.06 16 14 O -0.53 -13.40 15.98 5.36 0.09 -13.32 16 15 C 0.12 1.99 6.53 -83.01 -0.54 1.45 16 16 C -0.12 -1.63 9.33 -39.05 -0.36 -1.99 16 17 C -0.04 -0.42 5.91 -104.36 -0.62 -1.04 16 18 C -0.11 -0.79 10.06 36.00 0.36 -0.43 16 19 C -0.15 -1.52 9.59 -39.28 -0.38 -1.90 16 20 C 0.17 2.13 7.27 -17.46 -0.13 2.00 16 21 Cl -0.03 -0.36 29.10 -51.86 -1.51 -1.87 16 22 N -0.44 -6.86 3.97 -6.94 -0.03 -6.89 16 23 H 0.06 0.94 6.32 -51.93 -0.33 0.61 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.09 1.56 5.62 -51.93 -0.29 1.27 16 27 H 0.07 1.35 8.04 -51.93 -0.42 0.94 16 28 H 0.04 1.28 7.50 -51.93 -0.39 0.89 16 29 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.15 2.14 7.65 -52.49 -0.40 1.74 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 34 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 35 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 315.14 15.07 4.75 4.75 Total: -1.00 -32.43 315.14 -7.62 -40.05 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -4.32 Total: -3.36 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -1.87 Total: 2.91 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.28 Total: -46.26 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.51 Total: -1.87 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.43 -7.62 -40.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930463990.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.889 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds