Wall clock time and date at job start Tue Mar 31 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47218 * 2 1 4 4 C 1.46504 * 119.99872 * 93.73168 * 3 2 1 5 5 C 1.50700 * 109.46880 * 90.00024 * 4 3 2 6 6 H 1.07995 * 120.00171 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99857 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99969 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00140 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47127 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47284 * 119.99669 * 9 7 5 12 12 H 1.48500 * 109.47383 * 240.00113 * 9 7 5 13 13 C 1.34775 * 120.00323 * 273.73523 * 3 2 1 14 14 O 1.21508 * 120.00084 * 185.43770 * 13 3 2 15 15 C 1.48167 * 119.99657 * 5.43669 * 13 3 2 16 16 C 1.39272 * 119.71046 * 186.09873 * 15 13 3 17 17 C 1.38631 * 119.08865 * 180.02562 * 16 15 13 18 18 C 1.50693 * 120.74973 * 180.02562 * 17 16 15 19 19 C 1.38565 * 118.50346 * 359.97438 * 17 16 15 20 20 C 1.38726 * 119.34430 * 0.02562 * 19 17 16 21 21 Cl 1.73597 * 119.56968 * 180.02562 * 20 19 17 22 22 N 1.31621 * 120.86882 * 359.72530 * 20 19 17 23 23 H 1.09003 * 109.46892 * 59.99495 * 1 2 3 24 24 H 1.08993 * 109.47316 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47169 * 299.99880 * 1 2 3 26 26 H 1.08990 * 109.46990 * 240.00395 * 2 1 3 27 27 H 1.09000 * 109.47237 * 119.99830 * 2 1 3 28 28 H 1.08998 * 109.47413 * 210.00540 * 4 3 2 29 29 H 1.09006 * 109.46884 * 330.00458 * 4 3 2 30 30 H 0.96997 * 119.99973 * 180.02562 * 8 7 5 31 31 H 1.07993 * 120.45919 * 0.02562 * 16 15 13 32 32 H 1.09001 * 109.47342 * 89.99467 * 18 17 16 33 33 H 1.09002 * 109.47452 * 209.99914 * 18 17 16 34 34 H 1.09005 * 109.47203 * 329.99945 * 18 17 16 35 35 H 1.07996 * 120.32883 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3404 2.0443 1.2661 5 6 3.7875 1.7990 1.6077 6 1 4.4056 1.2087 0.9476 7 6 4.3224 2.3283 2.7630 8 7 3.5698 3.0476 3.5667 9 14 6.1164 2.0249 3.1862 10 1 6.7408 1.1920 2.1269 11 1 6.8295 3.3241 3.2796 12 1 6.2049 1.3167 4.4884 13 6 2.1714 2.0420 -1.1647 14 8 2.6687 3.1506 -1.1735 15 6 1.7330 1.4165 -2.4343 16 6 2.0084 2.0467 -3.6454 17 6 1.5919 1.4503 -4.8255 18 6 1.8703 2.0991 -6.1568 19 6 0.9147 0.2435 -4.7534 20 6 0.6745 -0.3281 -3.5124 21 17 -0.1728 -1.8402 -3.4153 22 7 1.0856 0.2579 -2.4079 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5137 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 2.1664 3.1160 1.1696 29 1 1.7072 1.6432 2.0576 30 1 3.9462 3.4203 4.3793 31 1 2.5390 2.9871 -3.6649 32 1 2.8302 1.7502 -6.5374 33 1 1.0821 1.8348 -6.8618 34 1 1.9000 3.1819 -6.0342 35 1 0.5772 -0.2471 -5.6543 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930463990.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:42 Heat of formation + Delta-G solvation = -13.507758 kcal Electronic energy + Delta-G solvation = -19926.432139 eV Core-core repulsion = 16757.222165 eV Total energy + Delta-G solvation = -3169.209974 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.95515 -40.06723 -37.68571 -37.18441 -35.35431 -34.65171 -32.35276 -31.58741 -29.23717 -28.87083 -26.16009 -24.57335 -24.05433 -23.39559 -20.47439 -18.73066 -18.39498 -18.11213 -17.17573 -16.95217 -16.51901 -16.35323 -16.08911 -15.38782 -14.97877 -14.73322 -14.33516 -14.03046 -13.79569 -13.54713 -13.50589 -13.25536 -13.10099 -12.81257 -12.68640 -12.64482 -12.54383 -12.31642 -12.17454 -11.84143 -11.72206 -11.27034 -10.66298 -10.55993 -10.31829 -10.15170 -9.49339 -8.24244 -6.39248 -0.52059 -0.03847 0.69604 1.35837 1.37894 1.50222 1.68018 2.12859 2.38987 2.63271 3.03851 3.07867 3.53956 3.75551 3.86888 4.04866 4.16628 4.28473 4.55329 4.61020 4.67744 4.74306 4.82668 4.92597 5.01806 5.05889 5.12843 5.18026 5.20583 5.39725 5.51416 5.56299 5.79849 6.02020 6.36460 6.64294 6.69637 7.17101 7.34324 8.83473 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.004912 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.535950 B = 5699.072611 C = 6427.363437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.114 3.886 3 N -0.581 5.581 4 C 0.261 3.739 5 C -0.543 4.543 6 H 0.050 0.950 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.971 3.029 10 H -0.270 1.270 11 H -0.278 1.278 12 H -0.268 1.268 13 C 0.545 3.455 14 O -0.579 6.579 15 C 0.087 3.913 16 C -0.119 4.119 17 C -0.026 4.026 18 C -0.113 4.113 19 C -0.123 4.123 20 C 0.157 3.843 21 Cl -0.016 7.016 22 N -0.458 5.458 23 H 0.055 0.945 24 H 0.083 0.917 25 H 0.032 0.968 26 H 0.101 0.899 27 H 0.061 0.939 28 H 0.002 0.998 29 H 0.026 0.974 30 H 0.268 0.732 31 H 0.147 0.853 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.512 -9.301 -20.975 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.008 4.008 3 N -0.309 5.309 4 C 0.140 3.860 5 C -0.581 4.581 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.795 3.205 10 H -0.194 1.194 11 H -0.203 1.203 12 H -0.193 1.193 13 C 0.332 3.668 14 O -0.460 6.460 15 C -0.049 4.049 16 C -0.140 4.140 17 C -0.034 4.034 18 C -0.169 4.169 19 C -0.144 4.144 20 C -0.009 4.009 21 Cl 0.013 6.987 22 N -0.173 5.173 23 H 0.074 0.926 24 H 0.101 0.899 25 H 0.051 0.949 26 H 0.119 0.881 27 H 0.079 0.921 28 H 0.020 0.980 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.165 0.835 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.098 0.902 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -7.492 -9.158 -19.931 23.178 hybrid contribution 0.889 0.432 0.375 1.057 sum -6.602 -8.726 -19.556 22.409 Atomic orbital electron populations 1.21924 0.94546 1.02542 1.00351 1.21865 0.95592 0.80731 1.02632 1.48233 1.61261 1.15111 1.06313 1.18857 0.95300 0.91903 0.79967 1.21653 0.96476 1.33281 1.06737 0.93199 1.25854 1.03006 0.94320 0.95748 1.70055 1.38080 1.35076 1.13435 0.85327 0.78744 0.78130 0.78344 1.19397 1.20331 1.19276 1.18433 0.79278 0.85072 0.83993 1.90713 1.46596 1.21835 1.86863 1.20807 0.98629 0.91780 0.93726 1.22216 0.98972 1.01495 0.91322 1.20693 0.92859 0.93235 0.96574 1.20973 1.04569 1.01116 0.90256 1.22303 0.98624 0.95499 0.97947 1.22069 0.97209 0.91306 0.90353 1.98412 1.74497 1.27202 1.98595 1.67458 1.10121 1.08626 1.31115 0.92614 0.89861 0.94872 0.88138 0.92057 0.97963 0.95640 0.92256 0.83492 0.88515 0.87934 0.90151 0.79565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 9.54 71.98 0.69 -3.73 16 2 C 0.11 4.37 5.67 86.38 0.49 4.86 16 3 N -0.58 -27.75 2.46 -829.20 -2.04 -29.79 16 4 C 0.26 14.91 5.10 85.63 0.44 15.34 16 5 C -0.54 -32.74 9.39 25.60 0.24 -32.50 16 6 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.58 5.46 84.65 0.46 1.04 16 8 N -0.93 -57.14 13.29 21.45 0.28 -56.86 16 9 Si 0.97 46.07 29.54 68.60 2.03 48.09 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 C 0.55 25.40 7.62 86.88 0.66 26.06 16 14 O -0.58 -31.37 15.98 -3.74 -0.06 -31.43 16 15 C 0.09 3.05 6.53 41.89 0.27 3.33 16 16 C -0.12 -3.30 9.33 22.61 0.21 -3.09 16 17 C -0.03 -0.46 5.91 -19.69 -0.12 -0.58 16 18 C -0.11 -1.09 10.06 71.23 0.72 -0.37 16 19 C -0.12 -2.04 9.59 22.46 0.22 -1.83 16 20 C 0.16 3.59 7.27 84.84 0.62 4.21 16 21 Cl -0.02 -0.30 29.10 -2.72 -0.08 -0.38 16 22 N -0.46 -13.86 3.97 -175.86 -0.70 -14.56 16 23 H 0.05 1.84 6.32 -2.39 -0.02 1.82 16 24 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 3.61 5.62 -2.39 -0.01 3.59 16 27 H 0.06 2.42 8.04 -2.39 -0.02 2.40 16 28 H 0.00 0.15 7.50 -2.39 -0.02 0.13 16 29 H 0.03 1.48 8.07 -2.38 -0.02 1.46 16 30 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 31 H 0.15 4.20 7.65 -2.91 -0.02 4.18 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 0.49 8.10 -2.39 -0.02 0.47 16 34 H 0.08 0.80 8.10 -2.38 -0.02 0.78 16 35 H 0.19 1.56 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -74.88 315.14 5.43 -69.45 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: 1.10 Total: 2.72 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 4.89 Total: 12.75 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -2.46 Total: -101.21 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.06 Total: -31.43 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -74.88 5.43 -69.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930463990.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.947 kcal (2) G-P(sol) polarization free energy of solvation -74.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds