Wall clock time and date at job start Tue Mar 31 2020 05:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38564 * 120.74901 * 2 1 4 4 C 1.38724 * 119.34219 * 179.97438 * 3 2 1 5 5 Cl 1.73604 * 119.56280 * 180.02562 * 4 3 2 6 6 N 1.31613 * 120.87296 * 359.72626 * 4 3 2 7 7 C 1.32748 * 121.61868 * 0.55950 * 6 4 3 8 8 C 1.48166 * 119.71627 * 179.71083 * 7 6 4 9 9 O 1.21510 * 120.00466 * 179.73211 * 8 7 6 10 10 N 1.34774 * 119.99714 * 359.73220 * 8 7 6 11 11 C 1.46506 * 120.00072 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47289 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.47131 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47130 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00100 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99709 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99896 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99699 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47182 * 90.00248 * 18 16 14 20 20 H 1.48498 * 109.47091 * 210.00192 * 18 16 14 21 21 H 1.48505 * 109.47095 * 329.99725 * 18 16 14 22 22 C 1.38626 * 120.74908 * 179.97438 * 2 1 3 23 23 H 1.08995 * 109.46731 * 270.02524 * 1 2 3 24 24 H 1.09007 * 109.46960 * 30.02453 * 1 2 3 25 25 H 1.08998 * 109.47192 * 150.01944 * 1 2 3 26 26 H 1.08007 * 120.32578 * 0.02562 * 3 2 1 27 27 H 0.97001 * 120.00676 * 359.97438 * 10 8 7 28 28 H 1.09001 * 109.47060 * 300.00359 * 11 10 8 29 29 H 1.09004 * 109.47073 * 59.99848 * 11 10 8 30 30 H 1.09001 * 109.46832 * 299.99854 * 12 11 10 31 31 H 1.08996 * 109.46952 * 59.99873 * 12 11 10 32 32 H 1.09001 * 109.46997 * 299.99574 * 13 12 11 33 33 H 1.09004 * 109.47298 * 59.99717 * 13 12 11 34 34 H 0.97007 * 119.99539 * 179.97438 * 17 16 14 35 35 H 1.08005 * 120.45082 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2155 1.1908 0.0000 4 6 3.6023 1.1568 0.0005 5 17 4.4956 2.6453 0.0012 6 7 4.2497 0.0109 0.0064 7 6 3.6079 -1.1511 0.0011 8 6 4.3792 -2.4162 0.0016 9 8 3.7971 -3.4828 0.0016 10 7 5.7265 -2.3839 0.0021 11 6 6.4893 -3.6347 0.0031 12 6 7.9864 -3.3192 0.0041 13 6 8.7829 -4.6255 0.0046 14 6 10.2575 -4.3147 0.0050 15 1 10.5930 -3.2882 0.0053 16 6 11.1783 -5.3410 0.0060 17 7 10.7697 -6.5910 0.0061 18 14 13.0061 -4.9558 0.0071 19 1 13.4895 -4.8533 1.4074 20 1 13.7410 -6.0404 -0.6920 21 1 13.2409 -3.6675 -0.6933 22 6 2.2158 -1.1914 0.0005 23 1 -0.3632 0.0005 1.0276 24 1 -0.3633 0.8898 -0.5143 25 1 -0.3633 -0.8901 -0.5135 26 1 1.6931 2.1362 0.0004 27 1 6.1914 -1.5325 0.0017 28 1 6.2393 -4.2119 0.8934 29 1 6.2400 -4.2130 -0.8866 30 1 8.2365 -2.7419 -0.8859 31 1 8.2352 -2.7411 0.8940 32 1 8.5327 -5.2032 0.8945 33 1 8.5339 -5.2033 -0.8855 34 1 11.4175 -7.3131 0.0064 35 1 1.6954 -2.1378 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931967975.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:27 Heat of formation + Delta-G solvation = -30.790093 kcal Electronic energy + Delta-G solvation = -18469.787987 eV Core-core repulsion = 15299.828594 eV Total energy + Delta-G solvation = -3169.959393 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.99446 -39.07821 -37.00818 -35.50024 -34.60022 -33.26624 -31.74106 -30.99110 -28.41965 -27.03299 -24.78713 -23.19742 -22.69021 -20.73489 -20.12518 -17.88043 -17.40329 -16.47794 -16.26371 -15.67993 -15.66405 -15.31436 -14.86498 -14.43333 -13.87136 -13.86256 -13.55119 -13.31616 -13.08593 -12.32034 -12.24756 -11.98430 -11.83833 -11.68026 -11.65494 -10.89072 -10.76791 -10.60826 -10.51720 -10.07387 -9.93799 -9.85116 -9.42673 -9.39880 -9.10652 -8.81228 -8.35506 -6.00316 -4.03067 0.20155 0.61055 1.38845 2.51295 3.11942 3.32616 3.38845 3.42221 3.48297 3.86221 4.25649 4.39748 4.46319 4.47439 4.63824 4.96425 5.05876 5.12738 5.26119 5.35628 5.46420 5.67817 5.73852 5.77104 5.97689 6.15988 6.42199 6.60727 6.81137 7.00841 7.09853 7.65205 7.66658 7.77549 7.98603 8.22348 8.40253 9.03578 9.61056 11.11039 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024440 B = 0.002965 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.375696 B = 9442.376022 C =10556.699780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.035 4.035 3 C -0.140 4.140 4 C 0.178 3.822 5 Cl -0.024 7.024 6 N -0.457 5.457 7 C 0.110 3.890 8 C 0.564 3.436 9 O -0.533 6.533 10 N -0.700 5.700 11 C 0.114 3.886 12 C -0.122 4.122 13 C 0.024 3.976 14 C -0.522 4.522 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.113 4.113 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.150 0.850 27 H 0.410 0.590 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.261 0.739 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.600 17.872 0.000 28.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.043 4.043 3 C -0.161 4.161 4 C 0.012 3.988 5 Cl 0.004 6.996 6 N -0.172 5.172 7 C -0.028 4.028 8 C 0.347 3.653 9 O -0.410 6.410 10 N -0.350 5.350 11 C -0.008 4.008 12 C -0.160 4.160 13 C -0.013 4.013 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.134 4.134 23 H 0.102 0.898 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.167 0.833 27 H 0.246 0.754 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -20.913 16.995 0.002 26.948 hybrid contribution 0.624 0.764 0.016 0.986 sum -20.289 17.759 0.019 26.964 Atomic orbital electron populations 1.20869 0.88773 1.04073 1.03579 1.20349 0.97527 0.91731 0.94711 1.21922 0.92428 1.00062 1.01735 1.21596 0.89005 0.88503 0.99736 1.98429 1.76646 1.28054 1.96431 1.66882 1.41415 0.97163 1.11717 1.21227 0.91783 0.91093 0.98725 1.17760 0.82856 0.86834 0.77877 1.90800 1.69967 1.29612 1.50616 1.46117 1.05448 1.11693 1.71754 1.21776 0.92360 0.84418 1.02293 1.21904 0.90813 1.02081 1.01165 1.19031 0.93993 0.90642 0.97667 1.21213 0.91240 0.92726 1.50825 0.92595 1.25028 0.99086 0.95074 0.95286 1.69967 1.34184 0.98546 1.50657 0.86578 0.85250 0.77980 0.78099 1.20660 1.21219 1.19867 1.22155 0.93687 1.00008 0.97540 0.89816 0.90455 0.90204 0.83250 0.75423 0.91348 0.91338 0.92552 0.92553 0.96240 0.96227 0.92943 0.82537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.50 10.06 36.01 0.36 -0.14 16 2 C -0.04 -0.27 5.91 -104.36 -0.62 -0.89 16 3 C -0.14 -1.10 9.58 -39.28 -0.38 -1.48 16 4 C 0.18 1.87 7.27 -17.47 -0.13 1.74 16 5 Cl -0.02 -0.23 29.11 -51.86 -1.51 -1.74 16 6 N -0.46 -5.80 9.52 -6.94 -0.07 -5.87 16 7 C 0.11 1.44 6.75 -83.01 -0.56 0.88 16 8 C 0.56 8.91 7.81 -12.18 -0.10 8.82 16 9 O -0.53 -9.76 16.32 5.36 0.09 -9.68 16 10 N -0.70 -11.09 5.55 -61.14 -0.34 -11.43 16 11 C 0.11 2.05 5.67 -4.04 -0.02 2.03 16 12 C -0.12 -2.45 5.27 -26.73 -0.14 -2.59 16 13 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 14 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 18 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.11 -1.17 9.33 -39.06 -0.36 -1.53 16 23 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 24 H 0.08 0.22 8.10 -51.92 -0.42 -0.20 16 25 H 0.08 0.31 8.10 -51.93 -0.42 -0.11 16 26 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 27 H 0.41 5.95 7.80 -40.82 -0.32 5.63 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 35 H 0.16 1.50 7.64 -52.48 -0.40 1.10 16 LS Contribution 324.59 15.07 4.89 4.89 Total: -1.00 -32.25 324.59 -8.20 -40.45 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -4.48 Total: -0.86 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -2.49 Total: -6.20 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.33 Total: -43.57 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.51 Total: -1.74 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.25 -8.20 -40.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931967975.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.657 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds