Wall clock time and date at job start Tue Mar 31 2020 06:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47007 * 2 1 4 4 C 1.34775 * 120.00441 * 271.86673 * 3 2 1 5 5 O 1.21619 * 120.00166 * 185.32931 * 4 3 2 6 6 C 1.47170 * 119.99692 * 5.33030 * 4 3 2 7 7 C 1.38250 * 128.47630 * 186.27403 * 6 4 3 8 8 N 1.31234 * 111.89297 * 180.02562 * 7 6 4 9 9 N 1.27341 * 120.03680 * 359.97438 * 8 7 6 10 10 S 1.56636 * 109.73774 * 359.70393 * 9 8 7 11 11 C 1.46497 * 119.99535 * 91.86992 * 3 2 1 12 12 C 1.53495 * 114.20892 * 119.99833 * 11 3 2 13 13 N 1.47070 * 87.98494 * 87.51593 * 12 11 3 14 14 C 1.36938 * 136.06070 * 207.08047 * 13 12 11 15 15 H 1.08003 * 119.99582 * 7.91540 * 14 13 12 16 16 C 1.38803 * 120.00236 * 187.90696 * 14 13 12 17 17 N 1.31622 * 120.00109 * 6.05592 * 16 14 13 18 18 Si 1.86804 * 120.00156 * 186.04864 * 16 14 13 19 19 H 1.48499 * 109.47124 * 265.01208 * 18 16 14 20 20 H 1.48505 * 109.46619 * 25.01441 * 18 16 14 21 21 H 1.48500 * 109.46769 * 145.01178 * 18 16 14 22 22 C 1.47060 * 87.88320 * 27.34629 * 13 12 11 23 23 H 1.09003 * 109.46908 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47398 * 299.99758 * 1 2 3 25 25 H 1.09001 * 109.47304 * 59.99699 * 1 2 3 26 26 H 1.09004 * 109.47066 * 240.00654 * 2 1 3 27 27 H 1.08998 * 109.47220 * 120.00818 * 2 1 3 28 28 H 1.08005 * 124.05409 * 0.02562 * 7 6 4 29 29 H 1.08998 * 113.28312 * 346.92955 * 11 3 2 30 30 H 1.09004 * 113.46554 * 332.74369 * 12 11 3 31 31 H 1.08996 * 113.47166 * 202.29681 * 12 11 3 32 32 H 0.96998 * 120.00445 * 179.97438 * 17 16 14 33 33 H 1.08999 * 113.47083 * 87.43519 * 22 13 12 34 34 H 1.09005 * 113.46631 * 217.87866 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2071 2.0293 -1.1665 5 8 2.7033 3.1397 -1.1719 6 6 1.8128 1.3933 -2.4338 7 6 2.0304 1.8392 -3.7242 8 7 1.5379 1.0130 -4.6170 9 7 0.9458 -0.0506 -4.2430 10 16 0.9493 -0.1360 -2.6790 11 6 2.3014 2.0579 1.2681 12 6 3.7569 2.5201 1.4236 13 7 3.3772 3.7708 0.7494 14 6 4.0148 4.7127 -0.0132 15 1 5.0290 4.5437 -0.3437 16 6 3.3574 5.8846 -0.3617 17 7 2.1678 6.1452 0.1375 18 14 4.1613 7.0918 -1.5390 19 1 4.8731 8.1396 -0.7640 20 1 5.1305 6.3702 -2.4024 21 1 3.1192 7.7250 -2.3865 22 6 2.0131 3.5682 1.2602 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 2.5441 2.7574 -3.9683 29 1 1.9048 1.5307 2.1357 30 1 4.4664 1.9187 0.8552 31 1 4.0591 2.6609 2.4613 32 1 1.7086 6.9643 -0.1057 33 1 1.8557 3.9853 2.2548 34 1 1.2369 3.8597 0.5525 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949729478.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:47 Heat of formation + Delta-G solvation = 154.986607 kcal Electronic energy + Delta-G solvation = -20984.449142 eV Core-core repulsion = 17856.882089 eV Total energy + Delta-G solvation = -3127.567053 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.50907 -39.90607 -36.70530 -35.40446 -32.10085 -31.50040 -30.06280 -27.74790 -26.91468 -24.62221 -24.05331 -23.23402 -22.15137 -20.07323 -19.20874 -17.80034 -17.04354 -16.50540 -15.79538 -15.55776 -14.84027 -14.63738 -14.42311 -14.11754 -13.72195 -13.57702 -13.12630 -12.63490 -12.42087 -12.32685 -11.79012 -11.66643 -11.54232 -11.31943 -11.20250 -10.72757 -10.59062 -10.06034 -9.85563 -9.75133 -9.69860 -9.35678 -9.30516 -9.12649 -8.40174 -8.00867 -6.49490 -5.59481 -2.79062 0.01862 1.05630 1.76824 2.30227 3.23170 3.48850 3.54971 3.56544 3.68059 4.29905 4.61104 4.67044 4.86613 5.04475 5.07156 5.26277 5.34348 5.48925 5.62075 5.65954 5.69470 5.89941 5.93629 6.11704 6.27827 6.45243 6.54959 6.83374 7.22780 7.39989 7.66623 7.80140 7.93829 8.12793 8.89731 9.19917 9.90595 10.81881 11.60865 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.019061 B = 0.007510 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.627380 B = 3727.531884 C = 4803.739089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.100 3.900 3 N -0.593 5.593 4 C 0.544 3.456 5 O -0.379 6.379 6 C -0.256 4.256 7 C 0.051 3.949 8 N -0.254 5.254 9 N -0.304 5.304 10 S 0.398 5.602 11 C 0.088 3.912 12 C 0.100 3.900 13 N -0.579 5.579 14 C -0.159 4.159 15 H 0.072 0.928 16 C -0.005 4.005 17 N -0.919 5.919 18 Si 0.902 3.098 19 H -0.294 1.294 20 H -0.283 1.283 21 H -0.293 1.293 22 C 0.159 3.841 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.212 0.788 29 H 0.091 0.909 30 H 0.037 0.963 31 H 0.040 0.960 32 H 0.248 0.752 33 H 0.036 0.964 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.800 -15.407 1.212 15.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.026 4.026 3 N -0.330 5.330 4 C 0.325 3.675 5 O -0.244 6.244 6 C -0.397 4.397 7 C -0.115 4.115 8 N -0.119 5.119 9 N -0.284 5.284 10 S 0.534 5.466 11 C -0.016 4.016 12 C -0.028 4.028 13 N -0.304 5.304 14 C -0.287 4.287 15 H 0.089 0.911 16 C -0.201 4.201 17 N -0.568 5.568 18 Si 0.734 3.266 19 H -0.222 1.222 20 H -0.208 1.208 21 H -0.219 1.219 22 C 0.032 3.968 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.228 0.772 29 H 0.109 0.891 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.353 -15.986 0.153 16.569 hybrid contribution 1.028 1.910 -0.363 2.199 sum -3.325 -14.077 -0.210 14.465 Atomic orbital electron populations 1.22415 0.95878 1.02572 1.02920 1.21696 0.94626 0.83804 1.02448 1.47250 1.67739 1.12700 1.05300 1.17070 0.82075 0.87274 0.81042 1.91613 1.34713 1.14648 1.83396 1.28762 1.09107 1.00942 1.00900 1.24415 0.99463 1.01144 0.86439 1.70770 1.09643 0.98972 1.32505 1.78562 1.20008 1.16964 1.12860 1.82949 1.41411 1.17313 1.04904 1.22976 0.98810 0.96308 0.83539 1.22827 0.94076 0.89932 0.95969 1.45330 1.06057 1.23951 1.55014 1.18549 0.96129 0.93555 1.20427 0.91072 1.24565 0.97173 0.97396 1.00974 1.69805 1.14300 1.25665 1.47012 0.86238 0.78061 0.81292 0.81019 1.22212 1.20822 1.21938 1.22243 0.91079 0.86279 0.97200 0.90969 0.91096 0.92490 0.91576 0.89136 0.77185 0.89116 0.94507 0.94257 0.94207 0.94605 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 9.09 37.16 0.34 -1.31 16 2 C 0.10 1.06 5.65 -4.04 -0.02 1.03 16 3 N -0.59 -9.28 2.75 -167.09 -0.46 -9.74 16 4 C 0.54 10.28 7.16 -12.63 -0.09 10.19 16 5 O -0.38 -9.14 10.39 5.26 0.05 -9.08 16 6 C -0.26 -4.13 6.40 -35.95 -0.23 -4.36 16 7 C 0.05 0.83 11.55 -17.80 -0.21 0.63 16 8 N -0.25 -4.24 11.54 30.36 0.35 -3.89 16 9 N -0.30 -4.70 12.51 60.35 0.75 -3.94 16 10 S 0.40 4.95 16.53 -107.50 -1.78 3.18 16 11 C 0.09 1.48 4.87 -67.68 -0.33 1.15 16 12 C 0.10 1.95 8.22 -8.51 -0.07 1.88 16 13 N -0.58 -14.39 2.09 -184.64 -0.39 -14.78 16 14 C -0.16 -4.44 8.28 -15.06 -0.12 -4.57 16 15 H 0.07 1.99 7.84 -52.48 -0.41 1.58 16 16 C -0.01 -0.15 5.28 -17.43 -0.09 -0.25 16 17 N -0.92 -27.60 11.85 55.49 0.66 -26.94 16 18 Si 0.90 22.95 29.56 -169.99 -5.02 17.92 16 19 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 20 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 22 C 0.16 3.57 6.17 -8.38 -0.05 3.51 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.61 6.01 -46.76 -0.28 0.33 16 26 H 0.07 0.67 4.76 -27.27 -0.13 0.54 16 27 H 0.09 0.75 8.06 -51.93 -0.42 0.33 16 28 H 0.21 3.34 8.06 -52.48 -0.42 2.92 16 29 H 0.09 1.18 8.10 -51.93 -0.42 0.76 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.63 6.99 -51.93 -0.36 1.27 16 LS Contribution 290.04 15.07 4.37 4.37 Total: -1.00 -33.80 290.04 -6.03 -39.83 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: -3.70 Total: -4.84 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -0.88 Total: 7.91 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: 0.92 Total: -59.29 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.05 Total: -9.08 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Atomic # 16 Polarization: 4.95 SS G_CDS: -1.78 Total: 3.18 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.80 -6.03 -39.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949729478.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.818 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds