Wall clock time and date at job start Tue Mar 31 2020 06:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.87378 * 2 1 4 4 C 1.54323 * 109.88139 * 121.01725 * 2 1 3 5 5 H 1.08999 * 110.72478 * 23.40044 * 4 2 1 6 6 N 1.46501 * 110.71992 * 260.30186 * 4 2 1 7 7 C 1.36935 * 120.00203 * 155.00230 * 6 4 2 8 8 H 1.08004 * 119.99787 * 0.02562 * 7 6 4 9 9 C 1.38811 * 119.99906 * 180.02562 * 7 6 4 10 10 N 1.31614 * 120.00387 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99603 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47451 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46557 * 120.00410 * 11 9 7 14 14 H 1.48496 * 109.47390 * 239.99958 * 11 9 7 15 15 C 1.55164 * 102.94014 * 141.76813 * 4 2 1 16 16 C 1.54904 * 101.57813 * 324.49251 * 15 4 2 17 17 N 1.47021 * 110.01027 * 238.90147 * 2 1 3 18 18 C 1.34777 * 125.64945 * 61.54400 * 17 2 1 19 19 O 1.21564 * 119.99671 * 0.02562 * 18 17 2 20 20 C 1.47757 * 120.00137 * 179.97438 * 18 17 2 21 21 C 1.39350 * 124.11386 * 180.02562 * 20 18 17 22 22 N 1.30096 * 112.14107 * 179.97438 * 21 20 18 23 23 S 1.55917 * 108.75617 * 359.97438 * 22 21 20 24 24 N 1.31489 * 124.11363 * 359.70667 * 20 18 17 25 25 H 1.09002 * 109.46917 * 299.29811 * 1 2 3 26 26 H 1.08999 * 109.47171 * 59.29872 * 1 2 3 27 27 H 1.08998 * 109.47003 * 179.29921 * 1 2 3 28 28 H 0.97006 * 120.00053 * 335.00172 * 6 4 2 29 29 H 0.97001 * 120.00526 * 179.97438 * 10 9 7 30 30 H 1.08991 * 111.00800 * 82.57191 * 15 4 2 31 31 H 1.09000 * 111.00097 * 206.38576 * 15 4 2 32 32 H 1.09002 * 110.36826 * 155.85543 * 16 15 4 33 33 H 1.09001 * 110.36870 * 278.06153 * 16 15 4 34 34 H 1.07994 * 123.93060 * 359.94405 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 1.2437 5 1 1.3062 -1.4457 1.6187 6 7 2.4482 0.1990 2.2902 7 6 2.4491 -0.1923 3.6024 8 1 2.1603 -1.1991 3.8659 9 6 2.8213 0.7051 4.5940 10 7 3.1728 1.9321 4.2729 11 14 2.8219 0.1714 6.3842 12 1 2.3894 -1.2461 6.4784 13 1 4.1917 0.3087 6.9410 14 1 1.8857 1.0273 7.1562 15 6 3.2901 -1.5101 0.6953 16 6 2.8196 -1.8769 -0.7342 17 7 2.0331 -0.7135 -1.1829 18 6 1.8116 -0.3625 -2.4652 19 8 1.1446 0.6215 -2.7194 20 6 2.3803 -1.1730 -3.5619 21 6 2.2062 -0.8891 -4.9150 22 7 2.8076 -1.7536 -5.6788 23 16 3.5168 -2.8104 -4.7781 24 7 3.1173 -2.2466 -3.3798 25 1 -0.3633 0.5029 0.8962 26 1 -0.3633 0.5247 -0.8836 27 1 -0.3633 -1.0276 -0.0126 28 1 2.7080 1.1032 2.0535 29 1 3.4326 2.5593 4.9658 30 1 4.1665 -0.8628 0.6642 31 1 3.4892 -2.4058 1.2836 32 1 3.6778 -2.0299 -1.3885 33 1 2.1972 -2.7715 -0.7109 34 1 1.6377 -0.0494 -5.2864 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985996497.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:55 Heat of formation + Delta-G solvation = 49.297228 kcal Electronic energy + Delta-G solvation = -19853.986845 eV Core-core repulsion = 16721.836757 eV Total energy + Delta-G solvation = -3132.150088 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.30691 -39.51846 -37.38281 -34.37361 -33.68217 -31.55462 -30.91444 -29.26342 -27.43962 -25.20854 -23.89405 -22.98379 -21.80774 -20.23572 -19.57053 -19.20943 -17.27637 -16.95475 -16.41466 -15.97733 -15.47907 -14.94802 -14.61691 -13.95627 -13.67487 -13.37989 -13.02534 -12.80175 -12.51786 -12.12081 -11.95142 -11.77693 -11.54785 -11.40497 -11.25139 -11.06650 -10.98955 -10.78186 -10.59843 -10.21851 -10.04792 -9.92552 -9.74215 -9.42940 -8.96328 -8.46943 -7.05513 -5.83792 -3.14270 0.21834 1.17437 1.38275 1.40472 2.97705 3.10392 3.39666 3.45523 3.47748 4.23581 4.52086 4.53871 4.92599 5.07440 5.20288 5.25420 5.38440 5.54372 5.61290 5.70750 5.82069 5.97336 6.06066 6.15264 6.18903 6.31807 6.43334 6.57886 6.59631 6.67137 6.89850 7.59339 7.64559 8.09606 8.33363 9.45125 9.99072 10.33892 11.38404 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.036955 B = 0.003802 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.491056 B = 7362.356211 C = 7783.649195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 H 0.082 0.918 4 C 0.177 3.823 5 H 0.069 0.931 6 N -0.714 5.714 7 C -0.244 4.244 8 H 0.073 0.927 9 C -0.009 4.009 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.158 4.158 16 C 0.101 3.899 17 N -0.585 5.585 18 C 0.610 3.390 19 O -0.528 6.528 20 C 0.022 3.978 21 C 0.089 3.911 22 N -0.578 5.578 23 S 0.697 5.303 24 N -0.536 5.536 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.386 0.614 29 H 0.256 0.744 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.271 -10.274 -17.463 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.100 0.900 4 C 0.065 3.935 5 H 0.086 0.914 6 N -0.354 5.354 7 C -0.375 4.375 8 H 0.091 0.909 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.199 4.199 16 C -0.022 4.022 17 N -0.317 5.317 18 C 0.392 3.608 19 O -0.405 6.405 20 C -0.153 4.153 21 C -0.105 4.105 22 N -0.419 5.419 23 S 0.739 5.261 24 N -0.385 5.385 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.220 0.780 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 0.495 -11.470 -18.024 21.370 hybrid contribution -0.756 1.448 1.319 2.099 sum -0.260 -10.023 -16.705 19.483 Atomic orbital electron populations 1.22052 0.94553 1.01733 1.02936 1.22082 0.94663 0.97036 0.84011 0.90026 1.21253 0.93702 0.91580 0.86983 0.91355 1.42352 1.79529 1.11627 1.01865 1.19261 1.38572 0.96825 0.82835 0.90898 1.24762 1.01892 0.95828 0.98109 1.69670 1.51341 1.04464 1.32223 0.86114 0.77222 0.77645 0.85145 1.20479 1.21831 1.21798 1.23614 1.01263 1.01750 0.93310 1.22599 0.95493 0.87437 0.96677 1.48346 1.50450 1.28671 1.04248 1.16359 0.80651 0.83373 0.80368 1.90816 1.40313 1.26560 1.82802 1.22612 1.01467 0.94982 0.96217 1.23782 0.99118 0.99804 0.87837 1.72259 1.18100 1.11735 1.39777 1.79118 1.38290 1.26354 0.82327 1.72839 1.17789 1.15224 1.32683 0.90815 0.91891 0.93031 0.77974 0.93401 0.90755 0.90487 0.89285 0.91738 0.76955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.11 37.16 0.34 -2.18 16 2 C 0.13 2.19 3.20 -66.95 -0.21 1.97 16 3 H 0.08 1.58 7.72 -51.93 -0.40 1.18 16 4 C 0.18 3.34 3.13 -66.09 -0.21 3.13 16 5 H 0.07 1.29 7.80 -51.93 -0.41 0.89 16 6 N -0.71 -17.06 5.23 -51.65 -0.27 -17.33 16 7 C -0.24 -6.47 9.96 -15.06 -0.15 -6.62 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.36 13.06 55.49 0.72 -26.64 16 11 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 C -0.16 -2.60 6.78 -24.58 -0.17 -2.77 16 16 C 0.10 1.43 6.09 -2.53 -0.02 1.42 16 17 N -0.59 -9.21 3.07 -164.15 -0.50 -9.71 16 18 C 0.61 9.48 7.65 -12.37 -0.09 9.39 16 19 O -0.53 -9.29 15.85 5.31 0.08 -9.21 16 20 C 0.02 0.29 6.71 -83.71 -0.56 -0.27 16 21 C 0.09 0.97 11.22 -17.87 -0.20 0.77 16 22 N -0.58 -6.04 11.41 19.43 0.22 -5.82 16 23 S 0.70 5.92 23.69 -107.50 -2.55 3.37 16 24 N -0.54 -6.13 8.29 23.17 0.19 -5.94 16 25 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.06 1.04 6.90 -51.93 -0.36 0.68 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.39 9.96 7.56 -40.82 -0.31 9.65 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.09 1.20 6.08 -51.93 -0.32 0.88 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.21 1.95 8.06 -52.49 -0.42 1.52 16 LS Contribution 301.77 15.07 4.55 4.55 Total: -1.00 -30.54 301.77 -7.81 -38.35 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -3.87 Total: 7.18 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -1.37 Total: 4.49 kcal Atomic # 7 Polarization: -65.81 SS G_CDS: 0.36 Total: -65.44 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.08 Total: -9.21 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 5.92 SS G_CDS: -2.55 Total: 3.37 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.54 -7.81 -38.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985996497.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.649 kcal (2) G-P(sol) polarization free energy of solvation -30.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds