Wall clock time and date at job start Tue Mar 31 2020 06:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.99563 * 2 1 4 4 C 1.54326 * 109.88230 * 238.90915 * 2 1 3 5 5 H 1.08994 * 110.87064 * 336.81635 * 4 2 1 6 6 N 1.46496 * 110.72078 * 100.02635 * 4 2 1 7 7 C 1.36945 * 119.99718 * 199.97461 * 6 4 2 8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 4 9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47174 * 270.00277 * 11 9 7 13 13 H 1.48501 * 109.47062 * 30.00228 * 11 9 7 14 14 H 1.48499 * 109.46981 * 150.00382 * 11 9 7 15 15 C 1.55159 * 102.94058 * 218.38706 * 4 2 1 16 16 C 1.54918 * 101.58370 * 35.49952 * 15 4 2 17 17 N 1.47018 * 109.88641 * 121.09750 * 2 1 3 18 18 C 1.34787 * 125.64413 * 298.32780 * 17 2 1 19 19 O 1.21557 * 120.00234 * 0.02562 * 18 17 2 20 20 C 1.47754 * 119.99473 * 180.02562 * 18 17 2 21 21 C 1.39356 * 124.11095 * 179.72528 * 20 18 17 22 22 N 1.30094 * 112.13752 * 179.84646 * 21 20 18 23 23 S 1.55918 * 108.76043 * 0.39762 * 22 21 20 24 24 N 1.31491 * 124.12063 * 0.02562 * 20 18 17 25 25 H 1.09005 * 109.46936 * 181.09498 * 1 2 3 26 26 H 1.08996 * 109.47276 * 301.09325 * 1 2 3 27 27 H 1.08996 * 109.47618 * 61.09521 * 1 2 3 28 28 H 0.96996 * 120.00499 * 19.97192 * 6 4 2 29 29 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 30 30 H 1.08998 * 111.00583 * 153.57053 * 15 4 2 31 31 H 1.08999 * 111.00256 * 277.38908 * 15 4 2 32 32 H 1.08998 * 110.36517 * 81.82493 * 16 15 4 33 33 H 1.08996 * 110.36994 * 204.15551 * 16 15 4 34 34 H 1.07997 * 123.92874 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 -1.2428 5 1 1.3065 -1.4458 -1.6211 6 7 2.4554 0.1962 -2.2875 7 6 2.5574 -0.2224 -3.5874 8 1 2.3430 -1.2497 -3.8422 9 6 2.9365 0.6737 -4.5773 10 7 3.1984 1.9256 -4.2667 11 14 3.0764 0.1025 -6.3504 12 1 4.4566 -0.3816 -6.6071 13 1 2.1119 -1.0004 -6.5927 14 1 2.7719 1.2354 -7.2609 15 6 3.2876 -1.5141 -0.6925 16 6 2.8146 -1.8794 0.7368 17 7 2.0300 -0.7141 1.1838 18 6 1.8084 -0.3613 2.4657 19 8 1.1434 0.6243 2.7186 20 6 2.3740 -1.1726 3.5634 21 6 2.2038 -0.8842 4.9162 22 7 2.7980 -1.7527 5.6811 23 16 3.5045 -2.8125 4.7819 24 7 3.1038 -2.2514 3.3829 25 1 -0.3633 -1.0275 0.0196 26 1 -0.3633 0.5307 0.8800 27 1 -0.3634 0.4967 -0.8996 28 1 2.6483 1.1188 -2.0586 29 1 3.4636 2.5517 -4.9584 30 1 3.4852 -2.4109 -1.2797 31 1 4.1655 -0.8689 -0.6611 32 1 2.1887 -2.7714 0.7128 33 1 3.6716 -2.0337 1.3922 34 1 1.6414 -0.0398 5.2864 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985996499.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:58 Heat of formation + Delta-G solvation = 49.635698 kcal Electronic energy + Delta-G solvation = -19857.286829 eV Core-core repulsion = 16725.151418 eV Total energy + Delta-G solvation = -3132.135411 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.30879 -39.52466 -37.38859 -34.37180 -33.68094 -31.55341 -30.92085 -29.25486 -27.44032 -25.20834 -23.89294 -22.99596 -21.80811 -20.22131 -19.57051 -19.22003 -17.25634 -16.95446 -16.41784 -15.97695 -15.48232 -14.95082 -14.61961 -13.95911 -13.68304 -13.37261 -13.01490 -12.80905 -12.52005 -12.16879 -11.94384 -11.78014 -11.54964 -11.40702 -11.25564 -11.06669 -10.97194 -10.77716 -10.57894 -10.25310 -10.05490 -9.91610 -9.73416 -9.43028 -8.95152 -8.47425 -7.04731 -5.83135 -3.13688 0.21786 1.17388 1.37950 1.40569 2.97214 3.10096 3.40175 3.45633 3.47328 4.23414 4.51938 4.54158 4.92518 5.07309 5.19711 5.25318 5.38343 5.54334 5.60984 5.70292 5.80884 5.97035 6.05344 6.15701 6.18712 6.32331 6.42730 6.57206 6.59911 6.66114 6.91319 7.58752 7.64588 8.09155 8.34159 9.45764 9.99746 10.34577 11.39042 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.036098 B = 0.003823 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.476086 B = 7321.512826 C = 7763.763927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.082 0.918 4 C 0.177 3.823 5 H 0.066 0.934 6 N -0.715 5.715 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.281 1.281 14 H -0.291 1.291 15 C -0.157 4.157 16 C 0.101 3.899 17 N -0.585 5.585 18 C 0.611 3.389 19 O -0.528 6.528 20 C 0.022 3.978 21 C 0.089 3.911 22 N -0.578 5.578 23 S 0.697 5.303 24 N -0.536 5.536 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.386 0.614 29 H 0.257 0.743 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.455 -10.180 17.471 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.024 3.976 3 H 0.100 0.900 4 C 0.065 3.935 5 H 0.084 0.916 6 N -0.355 5.355 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.207 1.207 14 H -0.217 1.217 15 C -0.199 4.199 16 C -0.022 4.022 17 N -0.317 5.317 18 C 0.393 3.607 19 O -0.405 6.405 20 C -0.153 4.153 21 C -0.105 4.105 22 N -0.419 5.419 23 S 0.740 5.260 24 N -0.385 5.385 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.220 0.780 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 0.310 -11.379 18.038 21.329 hybrid contribution -0.688 1.416 -1.320 2.054 sum -0.378 -9.963 16.718 19.465 Atomic orbital electron populations 1.22057 0.94535 1.01772 1.02952 1.22013 0.94643 0.96985 0.83932 0.89971 1.21255 0.93672 0.91599 0.86993 0.91624 1.42344 1.80963 1.09100 1.03127 1.19198 1.39337 0.95142 0.83793 0.90972 1.24759 1.02054 0.95614 0.98154 1.69666 1.52477 1.02998 1.32607 0.86182 0.77754 0.77379 0.84788 1.21670 1.20679 1.21744 1.23615 1.01262 1.01738 0.93258 1.22611 0.95499 0.87373 0.96720 1.48352 1.50601 1.28543 1.04245 1.16353 0.80630 0.83380 0.80361 1.90814 1.40354 1.26481 1.82832 1.22608 1.01665 0.94790 0.96225 1.23783 0.99175 0.99759 0.87814 1.72257 1.18188 1.11657 1.39778 1.79117 1.38233 1.26366 0.82333 1.72835 1.17800 1.15233 1.32672 0.92991 0.91852 0.90829 0.77976 0.93360 0.90517 0.90695 0.91731 0.89285 0.76952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.10 37.15 0.34 -2.17 16 2 C 0.13 2.22 3.21 -66.96 -0.21 2.00 16 3 H 0.08 1.59 7.69 -51.93 -0.40 1.19 16 4 C 0.18 3.34 3.11 -66.10 -0.21 3.14 16 5 H 0.07 1.24 7.84 -51.93 -0.41 0.84 16 6 N -0.71 -17.11 5.25 -51.65 -0.27 -17.39 16 7 C -0.24 -6.47 9.98 -15.06 -0.15 -6.62 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 10 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 11 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 C -0.16 -2.61 6.77 -24.58 -0.17 -2.78 16 16 C 0.10 1.44 6.08 -2.53 -0.02 1.42 16 17 N -0.59 -9.21 3.06 -164.15 -0.50 -9.71 16 18 C 0.61 9.47 7.65 -12.37 -0.09 9.38 16 19 O -0.53 -9.27 15.85 5.32 0.08 -9.19 16 20 C 0.02 0.29 6.71 -83.71 -0.56 -0.28 16 21 C 0.09 0.97 11.22 -17.87 -0.20 0.77 16 22 N -0.58 -6.04 11.41 19.43 0.22 -5.82 16 23 S 0.70 5.93 23.69 -107.50 -2.55 3.38 16 24 N -0.54 -6.14 8.29 23.18 0.19 -5.95 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 1.04 6.90 -51.93 -0.36 0.68 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.39 9.96 7.51 -40.82 -0.31 9.66 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.20 6.09 -51.93 -0.32 0.88 16 34 H 0.21 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 301.74 15.07 4.55 4.55 Total: -1.00 -30.56 301.74 -7.81 -38.37 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -3.87 Total: 7.18 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -1.37 Total: 4.52 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: 0.36 Total: -65.54 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -2.55 Total: 3.38 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.56 -7.81 -38.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985996499.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.004 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds