Wall clock time and date at job start Tue Mar 31 2020 06:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.00040 * 2 1 4 4 C 1.54330 * 109.99334 * 238.95616 * 2 1 3 5 5 H 1.09004 * 111.00070 * 100.13112 * 4 2 1 6 6 N 1.46502 * 110.51684 * 336.98173 * 4 2 1 7 7 C 1.36940 * 119.99947 * 95.94522 * 6 4 2 8 8 H 1.07999 * 120.00080 * 359.97438 * 7 6 4 9 9 C 1.38811 * 120.00208 * 180.02562 * 7 6 4 10 10 N 1.31615 * 120.00375 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99453 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46729 * 90.00844 * 11 9 7 13 13 H 1.48504 * 109.46887 * 210.00061 * 11 9 7 14 14 H 1.48493 * 109.47669 * 330.00675 * 11 9 7 15 15 C 1.55156 * 103.02449 * 218.66562 * 4 2 1 16 16 C 1.54912 * 101.57807 * 35.31372 * 15 4 2 17 17 N 1.47026 * 109.87819 * 121.09585 * 2 1 3 18 18 C 1.34782 * 125.64438 * 298.39337 * 17 2 1 19 19 O 1.21619 * 120.00365 * 359.71620 * 18 17 2 20 20 C 1.47172 * 119.99481 * 179.71927 * 18 17 2 21 21 C 1.38244 * 128.47293 * 179.97438 * 20 18 17 22 22 N 1.31241 * 111.88945 * 179.97438 * 21 20 18 23 23 N 1.27336 * 120.04055 * 0.02562 * 22 21 20 24 24 S 1.56645 * 109.73621 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.47337 * 304.43282 * 1 2 3 26 26 H 1.09004 * 109.46650 * 64.43402 * 1 2 3 27 27 H 1.09003 * 109.46886 * 184.42671 * 1 2 3 28 28 H 0.96991 * 119.99838 * 275.94166 * 6 4 2 29 29 H 0.97000 * 120.00180 * 179.97438 * 10 9 7 30 30 H 1.08997 * 111.00946 * 277.23612 * 15 4 2 31 31 H 1.08997 * 111.03414 * 153.39312 * 15 4 2 32 32 H 1.09000 * 110.36757 * 204.15441 * 16 15 4 33 33 H 1.08996 * 110.37291 * 81.82402 * 16 15 4 34 34 H 1.08001 * 124.05777 * 0.25377 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0577 -0.7479 -1.2426 5 1 2.3595 -0.0474 -2.0213 6 7 1.0466 -1.6791 -1.7492 7 6 0.2171 -1.2998 -2.7707 8 1 0.3081 -0.3141 -3.2025 9 6 -0.7414 -2.1818 -3.2505 10 7 -1.5389 -1.8172 -4.2319 11 14 -0.8992 -3.8866 -2.5030 12 1 -1.8620 -3.8444 -1.3733 13 1 -1.3881 -4.8361 -3.5349 14 1 0.4269 -4.3343 -2.0068 15 6 3.2865 -1.5184 -0.6913 16 6 2.8099 -1.8826 0.7370 17 7 2.0300 -0.7141 1.1840 18 6 1.8072 -0.3620 2.4658 19 8 1.1456 0.6266 2.7187 20 6 2.3648 -1.1738 3.5593 21 6 2.2479 -0.9769 4.9227 22 7 2.8773 -1.9035 5.6067 23 7 3.4962 -2.8351 4.9982 24 16 3.3516 -2.6432 3.4502 25 1 -0.3634 0.5811 0.8476 26 1 -0.3633 0.4435 -0.9271 27 1 -0.3633 -1.0246 0.0793 28 1 0.9646 -2.5642 -1.3612 29 1 -2.2084 -2.4337 -4.5674 30 1 4.1671 -0.8770 -0.6577 31 1 3.4814 -2.4157 -1.2787 32 1 3.6654 -2.0412 1.3935 33 1 2.1801 -2.7718 0.7117 34 1 1.7003 -0.1612 5.3712 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986014921.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:42 Heat of formation + Delta-G solvation = 68.832468 kcal Electronic energy + Delta-G solvation = -20229.115958 eV Core-core repulsion = 17097.812981 eV Total energy + Delta-G solvation = -3131.302977 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.98124 -40.12669 -37.72028 -34.34755 -32.49817 -31.66488 -30.96825 -29.64412 -27.52326 -25.63156 -23.83791 -23.07383 -22.11463 -20.13497 -19.74843 -18.72028 -17.93320 -16.99271 -16.57005 -16.02746 -15.46257 -14.85828 -14.68062 -14.14300 -13.97662 -13.81021 -13.25633 -12.96657 -12.72853 -12.66347 -12.21627 -11.97055 -11.79344 -11.13759 -11.10971 -10.95803 -10.77804 -10.47347 -10.29602 -10.25751 -10.13810 -10.03361 -9.97429 -9.68273 -9.10895 -8.64507 -7.46946 -5.90375 -3.28143 -0.45326 0.59923 1.28766 1.79621 2.78712 2.92739 3.24718 3.28648 3.36342 3.81280 4.27252 4.45835 4.51935 4.56411 4.90974 5.01746 5.17939 5.31002 5.37619 5.49540 5.50715 5.80267 5.91034 5.97410 6.13628 6.21033 6.39160 6.61127 6.78399 7.11532 7.38250 7.47099 7.82218 7.97713 8.27357 9.03463 9.75766 9.93038 11.27210 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024915 B = 0.005186 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.535635 B = 5398.326508 C = 5712.749329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.111 3.889 3 H 0.072 0.928 4 C 0.177 3.823 5 H 0.090 0.910 6 N -0.733 5.733 7 C -0.248 4.248 8 H 0.094 0.906 9 C 0.012 3.988 10 N -0.927 5.927 11 Si 0.879 3.121 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.277 1.277 15 C -0.143 4.143 16 C 0.088 3.912 17 N -0.597 5.597 18 C 0.608 3.392 19 O -0.518 6.518 20 C -0.275 4.275 21 C 0.066 3.934 22 N -0.253 5.253 23 N -0.278 5.278 24 S 0.428 5.572 25 H 0.044 0.956 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.362 0.638 29 H 0.261 0.739 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.726 -0.616 12.486 17.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.006 3.994 3 H 0.090 0.910 4 C 0.065 3.935 5 H 0.108 0.892 6 N -0.374 5.374 7 C -0.378 4.378 8 H 0.111 0.889 9 C -0.184 4.184 10 N -0.574 5.574 11 Si 0.709 3.291 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.203 1.203 15 C -0.182 4.182 16 C -0.037 4.037 17 N -0.330 5.330 18 C 0.393 3.607 19 O -0.395 6.395 20 C -0.416 4.416 21 C -0.101 4.101 22 N -0.117 5.117 23 N -0.259 5.259 24 S 0.564 5.436 25 H 0.063 0.937 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.195 0.805 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 12.291 -1.563 12.872 17.866 hybrid contribution -1.109 -0.158 0.610 1.275 sum 11.182 -1.722 13.482 17.600 Atomic orbital electron populations 1.21817 0.93124 1.02520 1.01955 1.22869 0.96577 0.95859 0.84106 0.91001 1.21246 0.87646 0.92102 0.92537 0.89244 1.42710 1.39454 1.13602 1.41609 1.19009 1.09631 1.00722 1.08428 0.88853 1.24640 0.98053 0.97719 0.98011 1.69681 1.23035 1.35967 1.28721 0.86661 0.77655 0.85986 0.78807 1.21076 1.21640 1.20314 1.23187 0.99111 1.02343 0.93581 1.22615 0.94597 0.89433 0.97038 1.48557 1.51399 1.28173 1.04887 1.16090 0.80601 0.83783 0.80217 1.90839 1.39615 1.26347 1.82728 1.28175 1.10211 1.03992 0.99243 1.24456 0.98040 0.99037 0.88531 1.70781 1.08592 1.00269 1.32092 1.78705 1.20376 1.20340 1.06434 1.82947 1.34601 1.15211 1.10888 0.93737 0.90184 0.92266 0.80499 0.92876 0.90079 0.88913 0.91508 0.90416 0.76872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.05 37.16 0.30 -2.21 16 2 C 0.11 1.74 3.43 -66.94 -0.23 1.51 16 3 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.18 2.77 3.54 -66.09 -0.23 2.54 16 5 H 0.09 1.41 8.06 -51.93 -0.42 0.99 16 6 N -0.73 -14.64 3.64 -51.65 -0.19 -14.82 16 7 C -0.25 -6.17 8.97 -15.06 -0.14 -6.30 16 8 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 9 C 0.01 0.33 5.50 -17.43 -0.10 0.24 16 10 N -0.93 -27.34 13.97 55.49 0.78 -26.56 16 11 Si 0.88 20.48 27.74 -169.99 -4.71 15.77 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.28 -5.90 6.52 56.52 0.37 -5.54 16 15 C -0.14 -1.66 6.69 -24.58 -0.16 -1.82 16 16 C 0.09 1.00 5.68 -2.53 -0.01 0.99 16 17 N -0.60 -8.40 3.06 -164.36 -0.50 -8.91 16 18 C 0.61 8.97 7.63 -12.63 -0.10 8.88 16 19 O -0.52 -9.14 16.09 5.26 0.08 -9.06 16 20 C -0.28 -3.36 6.66 -35.95 -0.24 -3.60 16 21 C 0.07 0.76 11.55 -17.80 -0.21 0.56 16 22 N -0.25 -3.23 11.54 30.36 0.35 -2.88 16 23 N -0.28 -3.46 12.51 60.35 0.75 -2.70 16 24 S 0.43 4.32 19.60 -107.50 -2.11 2.21 16 25 H 0.04 0.82 7.01 -51.93 -0.36 0.46 16 26 H 0.08 1.61 7.25 -51.93 -0.38 1.23 16 27 H 0.06 1.18 7.55 -51.93 -0.39 0.79 16 28 H 0.36 7.21 5.70 -40.82 -0.23 6.98 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.60 5.16 -33.84 -0.17 0.42 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.21 2.00 8.06 -52.49 -0.42 1.57 16 LS Contribution 294.31 15.07 4.44 4.44 Total: -1.00 -30.58 294.31 -5.89 -36.47 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -3.66 Total: 5.27 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -1.12 Total: 0.77 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 1.19 Total: -55.87 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.71 Total: 15.77 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -2.11 Total: 2.21 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.58 -5.89 -36.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986014921.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.307 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds