Wall clock time and date at job start Tue Mar 31 2020 06:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.00040 * 2 1 4 4 C 1.54330 * 109.99334 * 238.95616 * 2 1 3 5 5 H 1.09004 * 111.00070 * 100.13112 * 4 2 1 6 6 N 1.46502 * 110.51684 * 336.98173 * 4 2 1 7 7 C 1.36940 * 119.99947 * 95.94522 * 6 4 2 8 8 H 1.07999 * 120.00080 * 359.97438 * 7 6 4 9 9 C 1.38811 * 120.00208 * 180.02562 * 7 6 4 10 10 N 1.31615 * 120.00375 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99453 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46729 * 90.00844 * 11 9 7 13 13 H 1.48504 * 109.46887 * 210.00061 * 11 9 7 14 14 H 1.48493 * 109.47669 * 330.00675 * 11 9 7 15 15 C 1.55156 * 103.02449 * 218.66562 * 4 2 1 16 16 C 1.54912 * 101.57807 * 35.31372 * 15 4 2 17 17 N 1.47026 * 109.87819 * 121.09585 * 2 1 3 18 18 C 1.34782 * 125.64438 * 298.39337 * 17 2 1 19 19 O 1.21619 * 120.00365 * 359.71620 * 18 17 2 20 20 C 1.47172 * 119.99481 * 179.71927 * 18 17 2 21 21 C 1.38244 * 128.47293 * 179.97438 * 20 18 17 22 22 N 1.31241 * 111.88945 * 179.97438 * 21 20 18 23 23 N 1.27336 * 120.04055 * 0.02562 * 22 21 20 24 24 S 1.56645 * 109.73621 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.47337 * 304.43282 * 1 2 3 26 26 H 1.09004 * 109.46650 * 64.43402 * 1 2 3 27 27 H 1.09003 * 109.46886 * 184.42671 * 1 2 3 28 28 H 0.96991 * 119.99838 * 275.94166 * 6 4 2 29 29 H 0.97000 * 120.00180 * 179.97438 * 10 9 7 30 30 H 1.08997 * 111.00946 * 277.23612 * 15 4 2 31 31 H 1.08997 * 111.03414 * 153.39312 * 15 4 2 32 32 H 1.09000 * 110.36757 * 204.15441 * 16 15 4 33 33 H 1.08996 * 110.37291 * 81.82402 * 16 15 4 34 34 H 1.08001 * 124.05777 * 0.25377 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0577 -0.7479 -1.2426 5 1 2.3595 -0.0474 -2.0213 6 7 1.0466 -1.6791 -1.7492 7 6 0.2171 -1.2998 -2.7707 8 1 0.3081 -0.3141 -3.2025 9 6 -0.7414 -2.1818 -3.2505 10 7 -1.5389 -1.8172 -4.2319 11 14 -0.8992 -3.8866 -2.5030 12 1 -1.8620 -3.8444 -1.3733 13 1 -1.3881 -4.8361 -3.5349 14 1 0.4269 -4.3343 -2.0068 15 6 3.2865 -1.5184 -0.6913 16 6 2.8099 -1.8826 0.7370 17 7 2.0300 -0.7141 1.1840 18 6 1.8072 -0.3620 2.4658 19 8 1.1456 0.6266 2.7187 20 6 2.3648 -1.1738 3.5593 21 6 2.2479 -0.9769 4.9227 22 7 2.8773 -1.9035 5.6067 23 7 3.4962 -2.8351 4.9982 24 16 3.3516 -2.6432 3.4502 25 1 -0.3634 0.5811 0.8476 26 1 -0.3633 0.4435 -0.9271 27 1 -0.3633 -1.0246 0.0793 28 1 0.9646 -2.5642 -1.3612 29 1 -2.2084 -2.4337 -4.5674 30 1 4.1671 -0.8770 -0.6577 31 1 3.4814 -2.4157 -1.2787 32 1 3.6654 -2.0412 1.3935 33 1 2.1801 -2.7718 0.7117 34 1 1.7003 -0.1612 5.3712 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986014921.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:41 Heat of formation + Delta-G solvation = 46.902608 kcal Electronic energy + Delta-G solvation = -20230.066908 eV Core-core repulsion = 17097.812981 eV Total energy + Delta-G solvation = -3132.253927 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.92291 -41.27328 -38.96722 -35.92549 -33.79861 -33.10041 -32.18086 -31.12571 -28.52914 -26.98787 -25.19067 -24.53891 -23.17856 -21.37857 -20.71827 -19.82338 -19.70581 -18.10703 -17.74494 -17.02543 -16.65698 -16.21198 -15.84660 -15.67068 -15.22261 -15.18546 -14.62992 -14.31816 -14.06604 -13.71526 -13.60142 -13.27293 -12.94845 -12.87319 -12.46031 -12.41110 -12.12876 -11.93942 -11.78269 -11.66354 -11.31471 -11.18781 -11.03068 -10.95609 -10.87297 -9.81105 -9.30220 -7.95934 -5.29140 -1.37406 -0.27599 0.40569 0.86478 1.38933 1.43195 1.50530 1.68618 1.84899 2.52808 2.90813 3.27204 3.38808 3.54249 3.59452 3.62634 3.95662 4.12250 4.30646 4.41786 4.46371 4.55307 4.63820 4.77217 4.95340 5.10225 5.19281 5.22765 5.37731 5.51198 5.85779 6.26776 6.29788 6.55640 6.84085 7.13904 7.87750 8.05581 9.25330 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024915 B = 0.005186 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.535635 B = 5398.326508 C = 5712.749329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.117 3.883 3 H 0.079 0.921 4 C 0.167 3.833 5 H 0.088 0.912 6 N -0.734 5.734 7 C -0.212 4.212 8 H 0.064 0.936 9 C -0.060 4.060 10 N -0.985 5.985 11 Si 0.938 3.062 12 H -0.291 1.291 13 H -0.304 1.304 14 H -0.237 1.237 15 C -0.127 4.127 16 C 0.081 3.919 17 N -0.598 5.598 18 C 0.609 3.391 19 O -0.556 6.556 20 C -0.301 4.301 21 C 0.074 3.926 22 N -0.274 5.274 23 N -0.302 5.302 24 S 0.509 5.491 25 H 0.038 0.962 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.366 0.634 29 H 0.254 0.746 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.453 -2.138 14.041 20.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.012 3.988 3 H 0.097 0.903 4 C 0.057 3.943 5 H 0.106 0.894 6 N -0.375 5.375 7 C -0.343 4.343 8 H 0.082 0.918 9 C -0.251 4.251 10 N -0.635 5.635 11 Si 0.767 3.233 12 H -0.218 1.218 13 H -0.231 1.231 14 H -0.161 1.161 15 C -0.166 4.166 16 C -0.042 4.042 17 N -0.330 5.330 18 C 0.396 3.604 19 O -0.436 6.436 20 C -0.441 4.441 21 C -0.093 4.093 22 N -0.137 5.137 23 N -0.282 5.282 24 S 0.645 5.355 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.200 0.800 29 H 0.063 0.937 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 15.111 -3.103 14.487 21.162 hybrid contribution -1.883 0.407 0.141 1.932 sum 13.227 -2.696 14.628 19.905 Atomic orbital electron populations 1.21653 0.95567 1.00873 1.00272 1.22571 0.94422 0.96653 0.85144 0.90318 1.21474 0.88362 0.92117 0.92342 0.89363 1.42647 1.39776 1.14514 1.40565 1.18944 1.08751 0.98895 1.07752 0.91831 1.25349 0.98663 1.01874 0.99211 1.69863 1.24764 1.37362 1.31552 0.85663 0.79139 0.81287 0.77242 1.21841 1.23143 1.16125 1.23148 0.97692 1.02738 0.93008 1.22866 0.95355 0.88437 0.97579 1.48528 1.51468 1.28752 1.04268 1.16312 0.79966 0.83470 0.80664 1.90820 1.41283 1.28092 1.83356 1.27921 1.12011 1.05542 0.98662 1.24717 0.97240 0.98904 0.88451 1.70849 1.09499 1.00747 1.32641 1.78512 1.20819 1.20733 1.08132 1.82518 1.31797 1.12406 1.08777 0.94308 0.92775 0.93938 0.80018 0.93701 0.87048 0.87647 0.88558 0.89901 0.75543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 8.05 71.98 0.58 -4.08 16 2 C 0.12 3.51 3.43 45.34 0.16 3.66 16 3 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 4 C 0.17 4.84 3.54 46.18 0.16 5.01 16 5 H 0.09 2.61 8.06 -2.38 -0.02 2.60 16 6 N -0.73 -28.02 3.64 -317.31 -1.16 -29.17 16 7 C -0.21 -10.61 8.97 84.03 0.75 -9.85 16 8 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 9 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 10 N -0.98 -60.16 13.97 21.65 0.30 -59.86 16 11 Si 0.94 42.01 27.74 68.60 1.90 43.92 16 12 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 13 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 14 H -0.24 -8.95 6.52 99.48 0.65 -8.30 16 15 C -0.13 -2.35 6.69 31.99 0.21 -2.13 16 16 C 0.08 1.49 5.68 86.86 0.49 1.98 16 17 N -0.60 -15.21 3.06 -792.15 -2.43 -17.64 16 18 C 0.61 16.76 7.63 86.59 0.66 17.42 16 19 O -0.56 -19.18 16.09 -4.09 -0.07 -19.25 16 20 C -0.30 -6.55 6.66 24.62 0.16 -6.39 16 21 C 0.07 1.57 11.55 84.78 0.98 2.55 16 22 N -0.27 -6.41 11.54 -57.87 -0.67 -7.08 16 23 N -0.30 -6.61 12.51 37.02 0.46 -6.15 16 24 S 0.51 8.29 19.60 -56.49 -1.11 7.18 16 25 H 0.04 1.45 7.01 -2.39 -0.02 1.44 16 26 H 0.05 2.25 7.25 -2.38 -0.02 2.23 16 27 H 0.04 1.68 7.55 -2.39 -0.02 1.67 16 28 H 0.37 13.47 5.70 -92.72 -0.53 12.94 16 29 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.47 16 31 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.10 1.19 5.16 -13.89 -0.07 1.12 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.23 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -68.80 294.31 2.37 -66.43 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.50 Total: 16.22 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 4.63 Total: 5.40 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -3.49 Total: -119.89 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.07 Total: -19.25 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.90 Total: 43.92 kcal Atomic # 16 Polarization: 8.29 SS G_CDS: -1.11 Total: 7.18 kcal Total: -68.80 2.37 -66.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986014921.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.333 kcal (2) G-P(sol) polarization free energy of solvation -68.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds