Wall clock time and date at job start Tue Mar 31 2020 06:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.87591 * 2 1 4 4 C 1.54332 * 109.88444 * 121.02077 * 2 1 3 5 5 H 1.09001 * 110.71550 * 215.76532 * 4 2 1 6 6 N 1.46505 * 110.71747 * 338.85792 * 4 2 1 7 7 C 1.36931 * 119.99788 * 205.00190 * 6 4 2 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 4 10 10 N 1.31617 * 119.99873 * 180.27450 * 9 7 6 11 11 Si 1.86800 * 120.00209 * 0.27770 * 9 7 6 12 12 H 1.48498 * 109.47118 * 89.99559 * 11 9 7 13 13 H 1.48499 * 109.47134 * 210.00079 * 11 9 7 14 14 H 1.48507 * 109.46904 * 329.99901 * 11 9 7 15 15 C 1.55150 * 102.94391 * 97.22116 * 4 2 1 16 16 C 1.54906 * 101.58255 * 35.50456 * 15 4 2 17 17 N 1.47019 * 109.88069 * 238.82341 * 2 1 3 18 18 C 1.34781 * 125.64764 * 59.49328 * 17 2 1 19 19 O 1.21616 * 120.00045 * 359.97438 * 18 17 2 20 20 C 1.47175 * 119.99846 * 179.97438 * 18 17 2 21 21 C 1.38250 * 128.47192 * 179.97438 * 20 18 17 22 22 N 1.31235 * 111.88871 * 179.97438 * 21 20 18 23 23 N 1.27338 * 120.03802 * 0.02562 * 22 21 20 24 24 S 1.56639 * 109.73972 * 359.69276 * 23 22 21 25 25 H 1.09003 * 109.46741 * 298.98257 * 1 2 3 26 26 H 1.08992 * 109.46874 * 58.98458 * 1 2 3 27 27 H 1.08999 * 109.46961 * 178.98698 * 1 2 3 28 28 H 0.97000 * 119.99792 * 24.99985 * 6 4 2 29 29 H 0.97000 * 120.00553 * 180.02562 * 10 9 7 30 30 H 1.09000 * 111.00256 * 153.57994 * 15 4 2 31 31 H 1.09000 * 111.00472 * 277.42737 * 15 4 2 32 32 H 1.09004 * 110.36727 * 204.15442 * 16 15 4 33 33 H 1.08995 * 110.37119 * 81.82663 * 16 15 4 34 34 H 1.07997 * 124.05250 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7479 1.2437 5 1 2.9640 -0.2791 1.6204 6 7 1.0293 -0.7996 2.2887 7 6 1.3954 -0.9339 3.6013 8 1 2.4403 -1.0014 3.8663 9 6 0.4239 -0.9771 4.5918 10 7 0.7760 -1.1008 5.8540 11 14 -1.3832 -0.8597 4.1336 12 1 -1.9222 -2.2222 3.8923 13 1 -2.1346 -0.2192 5.2428 14 1 -1.5293 -0.0441 2.9011 15 6 2.3519 -2.1686 0.6954 16 6 2.8568 -1.8509 -0.7342 17 7 2.0300 -0.7157 -1.1829 18 6 1.7742 -0.3887 -2.4652 19 8 1.0744 0.5729 -2.7195 20 6 2.3419 -1.1952 -3.5575 21 6 2.1951 -1.0211 -4.9212 22 7 2.8463 -1.9334 -5.6038 23 7 3.5081 -2.8342 -4.9939 24 16 3.3875 -2.6231 -3.4465 25 1 -0.3633 0.4980 0.8990 26 1 -0.3633 0.5295 -0.8807 27 1 -0.3633 -1.0275 -0.0182 28 1 0.0910 -0.7385 2.0506 29 1 0.0972 -1.1313 6.5462 30 1 3.1270 -2.6602 1.2833 31 1 1.4452 -2.7728 0.6642 32 1 2.7087 -2.7100 -1.3886 33 1 3.9091 -1.5678 -0.7107 34 1 1.6142 -0.2293 -5.3706 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986014928.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:49 Heat of formation + Delta-G solvation = 72.073201 kcal Electronic energy + Delta-G solvation = -19956.719245 eV Core-core repulsion = 16825.556797 eV Total energy + Delta-G solvation = -3131.162448 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.05403 -40.25331 -37.79515 -34.57233 -32.61910 -31.71064 -31.04173 -29.72671 -27.59113 -25.73498 -24.10153 -22.92937 -22.32116 -20.02965 -19.69122 -18.86400 -18.12973 -17.15234 -16.40548 -16.20935 -15.67488 -15.03988 -14.71015 -14.34021 -14.13986 -13.66924 -13.21099 -12.93297 -12.84445 -12.52472 -12.25203 -12.16764 -11.92632 -11.57264 -11.33294 -11.01652 -10.74411 -10.57585 -10.36130 -10.30437 -10.24266 -10.09663 -10.02549 -9.67090 -9.08941 -8.80801 -7.45469 -5.90681 -3.28699 -0.52206 0.53743 1.23041 1.72656 2.63673 2.79160 3.27323 3.30142 3.37394 3.74541 4.18067 4.44662 4.46420 4.62683 4.90865 4.95174 5.17613 5.26223 5.30670 5.41318 5.47532 5.64875 5.70959 5.86104 5.97564 6.19949 6.31156 6.35344 6.43702 6.65908 7.24688 7.39085 7.80919 7.84881 8.27621 9.04145 9.76272 9.93951 11.26902 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.035675 B = 0.004321 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.678936 B = 6478.848460 C = 6915.452931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.127 3.873 3 H 0.083 0.917 4 C 0.180 3.820 5 H 0.080 0.920 6 N -0.739 5.739 7 C -0.254 4.254 8 H 0.093 0.907 9 C 0.012 3.988 10 N -0.928 5.928 11 Si 0.878 3.122 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.275 1.275 15 C -0.149 4.149 16 C 0.085 3.915 17 N -0.600 5.600 18 C 0.611 3.389 19 O -0.519 6.519 20 C -0.280 4.280 21 C 0.068 3.932 22 N -0.253 5.253 23 N -0.278 5.278 24 S 0.436 5.564 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.368 0.632 29 H 0.262 0.738 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.798 -2.121 -17.336 18.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.024 3.976 3 H 0.101 0.899 4 C 0.068 3.932 5 H 0.098 0.902 6 N -0.383 5.383 7 C -0.383 4.383 8 H 0.111 0.889 9 C -0.185 4.185 10 N -0.575 5.575 11 Si 0.708 3.292 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.201 1.201 15 C -0.191 4.191 16 C -0.040 4.040 17 N -0.333 5.333 18 C 0.397 3.603 19 O -0.396 6.396 20 C -0.421 4.421 21 C -0.099 4.099 22 N -0.118 5.118 23 N -0.258 5.258 24 S 0.571 5.429 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.205 0.795 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 5.652 -3.160 -17.690 18.838 hybrid contribution -2.194 1.133 -0.253 2.482 sum 3.458 -2.027 -17.943 18.386 Atomic orbital electron populations 1.22122 0.94734 1.02461 1.03174 1.22008 0.95321 0.96346 0.83927 0.89898 1.21169 0.93322 0.92066 0.86607 0.90247 1.42956 1.03492 1.88615 1.03195 1.19058 0.94967 1.43464 0.80828 0.88909 1.24653 0.97365 1.01433 0.95039 1.69684 1.32705 1.56193 0.98875 0.86679 0.86894 0.78017 0.77601 1.20902 1.21472 1.20144 1.23553 1.02303 1.01323 0.91905 1.22725 0.95536 0.87891 0.97835 1.48443 1.49788 1.30470 1.04625 1.16065 0.80661 0.83502 0.80106 1.90838 1.38189 1.27796 1.82756 1.28084 1.09668 1.05219 0.99089 1.24462 0.98262 0.98631 0.88503 1.70795 1.07896 1.01026 1.32054 1.78700 1.19732 1.20829 1.06519 1.82992 1.32571 1.16534 1.10753 0.90326 0.91457 0.92479 0.79538 0.92832 0.89352 0.90386 0.91496 0.90078 0.76883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 7.93 37.16 0.29 -2.34 16 2 C 0.13 1.89 3.48 -66.95 -0.23 1.66 16 3 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 4 C 0.18 2.94 3.49 -66.09 -0.23 2.71 16 5 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 6 N -0.74 -15.55 4.74 -51.65 -0.24 -15.79 16 7 C -0.25 -6.53 10.44 -15.06 -0.16 -6.69 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 9 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 10 N -0.93 -27.63 13.97 55.49 0.78 -26.86 16 11 Si 0.88 20.82 27.74 -169.99 -4.72 16.11 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.09 6.44 56.52 0.36 -5.72 16 15 C -0.15 -2.00 6.77 -24.59 -0.17 -2.17 16 16 C 0.08 0.89 5.75 -2.53 -0.01 0.88 16 17 N -0.60 -7.76 3.08 -164.37 -0.51 -8.26 16 18 C 0.61 8.22 7.62 -12.63 -0.10 8.12 16 19 O -0.52 -8.39 15.88 5.26 0.08 -8.31 16 20 C -0.28 -3.10 6.66 -35.95 -0.24 -3.34 16 21 C 0.07 0.72 11.55 -17.80 -0.21 0.51 16 22 N -0.25 -3.02 11.54 30.36 0.35 -2.67 16 23 N -0.28 -3.21 12.51 60.35 0.75 -2.46 16 24 S 0.44 3.98 19.60 -107.50 -2.11 1.87 16 25 H 0.08 1.34 6.69 -51.93 -0.35 1.00 16 26 H 0.07 1.07 6.76 -51.93 -0.35 0.71 16 27 H 0.06 0.89 8.03 -51.93 -0.42 0.48 16 28 H 0.37 7.72 2.92 -40.82 -0.12 7.61 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.59 5.18 -34.05 -0.18 0.42 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.21 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 293.55 15.07 4.42 4.42 Total: -1.00 -30.94 293.55 -5.87 -36.82 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -3.54 Total: 5.56 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -1.14 Total: -0.42 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 1.13 Total: -56.04 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.08 Total: -8.31 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.72 Total: 16.11 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -2.11 Total: 1.87 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.94 -5.87 -36.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986014928.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.888 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds