Wall clock time and date at job start Tue Mar 31 2020 06:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.99547 * 2 1 4 4 C 1.54333 * 109.99042 * 238.96231 * 2 1 3 5 5 H 1.09001 * 110.85176 * 100.19788 * 4 2 1 6 6 N 1.46507 * 110.51664 * 336.97570 * 4 2 1 7 7 C 1.36929 * 119.99781 * 157.00936 * 6 4 2 8 8 H 1.08000 * 120.00758 * 0.02562 * 7 6 4 9 9 C 1.38820 * 119.99809 * 180.02562 * 7 6 4 10 10 N 1.31620 * 120.00038 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99816 * 0.02562 * 9 7 6 12 12 H 1.48509 * 109.46883 * 90.00197 * 11 9 7 13 13 H 1.48501 * 109.47005 * 209.99503 * 11 9 7 14 14 H 1.48492 * 109.47363 * 329.99984 * 11 9 7 15 15 C 1.55155 * 103.01921 * 218.66617 * 4 2 1 16 16 C 1.54910 * 101.58476 * 35.30926 * 15 4 2 17 17 N 1.47023 * 109.88285 * 121.09619 * 2 1 3 18 18 C 1.34784 * 125.64928 * 298.39531 * 17 2 1 19 19 O 1.21606 * 119.99558 * 359.71759 * 18 17 2 20 20 C 1.47444 * 119.99835 * 179.43921 * 18 17 2 21 21 C 1.37987 * 124.15197 * 179.72210 * 20 18 17 22 22 S 1.72099 * 104.03246 * 179.90325 * 21 20 18 23 23 N 1.56403 * 96.15352 * 0.33020 * 22 21 20 24 24 N 1.27416 * 109.87816 * 359.79461 * 23 22 21 25 25 H 1.09002 * 109.46784 * 306.15366 * 1 2 3 26 26 H 1.08994 * 109.47218 * 66.15648 * 1 2 3 27 27 H 1.09001 * 109.46787 * 186.16113 * 1 2 3 28 28 H 0.97002 * 119.99813 * 337.01749 * 6 4 2 29 29 H 0.96993 * 119.99726 * 180.02562 * 10 9 7 30 30 H 1.08995 * 111.00452 * 277.23251 * 15 4 2 31 31 H 1.09005 * 111.03843 * 153.39459 * 15 4 2 32 32 H 1.09003 * 110.36561 * 204.15404 * 16 15 4 33 33 H 1.08996 * 110.36819 * 81.82845 * 16 15 4 34 34 H 1.07998 * 127.98065 * 359.96695 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 1 2.3598 -0.0450 -2.0192 6 7 1.0464 -1.6790 -1.7493 7 6 1.0841 -2.0860 -3.0562 8 1 1.8594 -1.7209 -3.7135 9 6 0.1257 -2.9679 -3.5364 10 7 0.1621 -3.3595 -4.7925 11 14 -1.2158 -3.5989 -2.3999 12 1 -2.3852 -2.6854 -2.4594 13 1 -1.6284 -4.9595 -2.8287 14 1 -0.7005 -3.6535 -1.0083 15 6 3.2863 -1.5184 -0.6914 16 6 2.8099 -1.8826 0.7369 17 7 2.0301 -0.7141 1.1839 18 6 1.8074 -0.3621 2.4658 19 8 1.1457 0.6264 2.7187 20 6 2.3610 -1.1789 3.5614 21 6 2.1911 -0.8954 4.9011 22 16 3.0343 -2.1617 5.7057 23 7 3.5117 -2.8953 4.4095 24 7 3.0893 -2.2748 3.3800 25 1 -0.3633 0.6063 0.8298 26 1 -0.3633 0.4154 -0.9399 27 1 -0.3633 -1.0218 0.1103 28 1 0.3502 -2.0072 -1.1590 29 1 -0.5078 -3.9754 -5.1281 30 1 4.1669 -0.8769 -0.6579 31 1 3.4813 -2.4156 -1.2789 32 1 3.6656 -2.0412 1.3932 33 1 2.1802 -2.7718 0.7115 34 1 1.6525 -0.0701 5.3427 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986610813.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:05 Heat of formation + Delta-G solvation = 71.473017 kcal Electronic energy + Delta-G solvation = -20249.059468 eV Core-core repulsion = 17117.870994 eV Total energy + Delta-G solvation = -3131.188474 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.31818 -39.72423 -37.63762 -34.15132 -32.48951 -31.59557 -30.92508 -29.47506 -27.27833 -25.43797 -24.32444 -23.12326 -21.87622 -20.56452 -19.57542 -18.27937 -17.84232 -16.59409 -16.36137 -16.12018 -15.67159 -14.89889 -14.54900 -14.27109 -13.66187 -13.37043 -13.26126 -12.73936 -12.57749 -12.46557 -12.33903 -11.95053 -11.56875 -11.19522 -11.14310 -10.86445 -10.71217 -10.43721 -10.31280 -10.25011 -10.18617 -10.12435 -9.98934 -9.58563 -8.97783 -8.50577 -7.33443 -5.81969 -3.18085 -0.19546 0.65716 1.28182 1.29273 2.96556 3.09404 3.34255 3.37497 3.42823 3.65491 4.44334 4.54750 4.58026 4.96984 5.02842 5.18010 5.21836 5.52516 5.59130 5.62406 5.71225 5.87022 6.10841 6.16861 6.30510 6.40634 6.49846 6.60836 6.67295 6.77424 7.26260 7.56690 7.93718 8.06647 8.37120 9.14607 9.87066 10.06113 11.36088 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.025030 B = 0.004785 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.393285 B = 5850.585122 C = 6059.812538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.124 3.876 3 H 0.081 0.919 4 C 0.178 3.822 5 H 0.081 0.919 6 N -0.739 5.739 7 C -0.246 4.246 8 H 0.093 0.907 9 C 0.010 3.990 10 N -0.931 5.931 11 Si 0.878 3.122 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.279 1.279 15 C -0.160 4.160 16 C 0.102 3.898 17 N -0.588 5.588 18 C 0.611 3.389 19 O -0.533 6.533 20 C -0.013 4.013 21 C -0.238 4.238 22 S 0.449 5.551 23 N -0.291 5.291 24 N -0.203 5.203 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.365 0.635 29 H 0.260 0.740 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.215 5.013 21.526 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.021 3.979 3 H 0.099 0.901 4 C 0.066 3.934 5 H 0.099 0.901 6 N -0.382 5.382 7 C -0.376 4.376 8 H 0.111 0.889 9 C -0.186 4.186 10 N -0.578 5.578 11 Si 0.708 3.292 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.205 1.205 15 C -0.201 4.201 16 C -0.020 4.020 17 N -0.320 5.320 18 C 0.394 3.606 19 O -0.410 6.410 20 C -0.160 4.160 21 C -0.395 4.395 22 S 0.585 5.415 23 N -0.271 5.271 24 N -0.073 5.073 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.200 0.800 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 6.918 3.952 21.886 23.291 hybrid contribution -1.824 0.458 0.131 1.885 sum 5.094 4.411 22.017 23.025 Atomic orbital electron populations 1.21982 0.94435 1.02071 1.02685 1.22129 0.95246 0.96179 0.84330 0.90103 1.21200 0.88735 0.91457 0.91960 0.90134 1.42893 1.31554 1.53526 1.10254 1.19061 1.11290 1.21919 0.85319 0.88916 1.24625 0.98666 0.99541 0.95744 1.69687 1.37093 1.37472 1.13535 0.86670 0.83252 0.78681 0.80609 1.20910 1.21639 1.20483 1.23532 0.98967 1.02666 0.94916 1.22609 0.95611 0.87515 0.96278 1.48520 1.50766 1.28463 1.04227 1.16243 0.80492 0.83472 0.80410 1.90809 1.40484 1.26648 1.83067 1.22746 1.02479 0.95997 0.94793 1.28850 1.06497 1.07621 0.96557 1.81474 1.32130 1.08368 1.19504 1.78745 1.23950 1.25505 0.98878 1.71755 1.09342 1.05482 1.20727 0.92200 0.90519 0.92727 0.80013 0.92975 0.91661 0.88898 0.89235 0.91164 0.77526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.21 37.16 0.31 -2.35 16 2 C 0.12 2.06 3.42 -66.94 -0.23 1.83 16 3 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.18 3.23 3.48 -66.09 -0.23 3.00 16 5 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 6 N -0.74 -16.57 4.40 -51.64 -0.23 -16.80 16 7 C -0.25 -6.62 10.45 -15.06 -0.16 -6.77 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 9 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 10 N -0.93 -28.60 13.97 55.49 0.78 -27.83 16 11 Si 0.88 21.92 27.74 -169.99 -4.71 17.21 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 15 C -0.16 -2.59 6.77 -24.58 -0.17 -2.75 16 16 C 0.10 1.62 6.04 -2.53 -0.02 1.61 16 17 N -0.59 -9.52 3.06 -164.25 -0.50 -10.03 16 18 C 0.61 9.72 7.63 -12.51 -0.10 9.62 16 19 O -0.53 -9.33 15.94 5.27 0.08 -9.25 16 20 C -0.01 -0.17 6.76 -83.78 -0.57 -0.74 16 21 C -0.24 -2.26 11.21 30.64 0.34 -1.92 16 22 S 0.45 3.42 23.38 -107.50 -2.51 0.91 16 23 N -0.29 -3.49 12.49 60.35 0.75 -2.74 16 24 N -0.20 -2.81 8.52 32.74 0.28 -2.53 16 25 H 0.06 1.01 7.07 -51.93 -0.37 0.64 16 26 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.05 1.02 6.52 -51.93 -0.34 0.68 16 28 H 0.36 8.32 3.55 -40.82 -0.14 8.17 16 29 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 32 H 0.09 1.33 6.09 -51.93 -0.32 1.01 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.21 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 296.19 15.07 4.46 4.46 Total: -1.00 -32.13 296.19 -6.23 -38.35 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -3.72 Total: 6.51 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -0.91 Total: 1.72 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 1.08 Total: -59.92 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.21 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -2.51 Total: 0.91 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.13 -6.23 -38.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986610813.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.826 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds