Wall clock time and date at job start Tue Mar 31 2020 06:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.41403 * 2 1 4 4 C 1.54909 * 110.36456 * 122.29104 * 2 1 3 5 5 C 1.55157 * 101.58301 * 155.84919 * 4 2 1 6 6 H 1.08996 * 110.72048 * 83.03538 * 5 4 2 7 7 N 1.46498 * 110.72134 * 206.13780 * 5 4 2 8 8 C 1.36943 * 119.99727 * 204.99905 * 7 5 4 9 9 H 1.07998 * 120.00392 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99586 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00460 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99694 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47297 * 179.97438 * 12 10 8 14 14 H 1.48503 * 109.47261 * 60.00129 * 12 10 8 15 15 H 1.48500 * 109.47454 * 300.00122 * 12 10 8 16 16 C 1.54330 * 102.94147 * 324.50009 * 5 4 2 17 17 N 1.47021 * 107.26851 * 22.18927 * 16 5 4 18 18 C 1.34784 * 125.64608 * 181.02346 * 17 16 5 19 19 O 1.21559 * 119.99491 * 180.02562 * 18 17 16 20 20 C 1.47755 * 119.99834 * 0.04695 * 18 17 16 21 21 C 1.39353 * 124.11047 * 179.97438 * 20 18 17 22 22 N 1.30094 * 112.13998 * 179.97438 * 21 20 18 23 23 S 1.55930 * 108.75482 * 0.02562 * 22 21 20 24 24 N 1.31485 * 124.11539 * 359.69760 * 20 18 17 25 25 H 1.09000 * 109.47091 * 297.70795 * 1 2 3 26 26 H 1.09005 * 109.46895 * 57.70592 * 1 2 3 27 27 H 1.08998 * 109.47255 * 177.70546 * 1 2 3 28 28 H 1.09003 * 111.00445 * 37.77391 * 4 2 1 29 29 H 1.09001 * 111.04226 * 273.93495 * 4 2 1 30 30 H 0.96998 * 120.00095 * 24.99365 * 7 5 4 31 31 H 0.97001 * 119.99952 * 359.97438 * 11 10 8 32 32 H 1.09001 * 109.88413 * 141.60900 * 16 5 4 33 33 H 1.09002 * 109.88144 * 262.77609 * 16 5 4 34 34 H 1.07995 * 123.93191 * 359.94098 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0691 -0.7758 1.2277 5 6 3.4777 -1.1997 0.7343 6 1 4.1951 -0.3913 0.8751 7 7 3.9249 -2.4128 1.4232 8 6 5.2630 -2.6763 1.5468 9 1 5.9887 -1.9900 1.1360 10 6 5.6867 -3.8255 2.2000 11 7 4.8023 -4.6622 2.7002 12 14 7.5120 -4.1852 2.3679 13 1 7.6994 -5.4630 3.1010 14 1 8.1666 -3.0838 3.1187 15 1 8.1213 -4.2945 1.0180 16 6 3.2494 -1.4769 -0.7666 17 7 2.0431 -0.7385 -1.1682 18 6 1.4973 -0.7364 -2.4005 19 8 0.4943 -0.0857 -2.6198 20 6 2.1178 -1.5255 -3.4847 21 6 1.6265 -1.5855 -4.7873 22 7 2.3529 -2.3484 -5.5507 23 16 3.5301 -2.9265 -4.7072 24 7 3.2038 -2.2524 -3.3391 25 1 -0.3633 0.4778 0.9098 26 1 -0.3633 0.5491 -0.8688 27 1 -0.3634 -1.0268 -0.0411 28 1 1.4510 -1.6480 1.4409 29 1 2.1398 -0.1269 2.1006 30 1 3.2731 -3.0294 1.7919 31 1 3.8545 -4.4756 2.6127 32 1 4.1065 -1.1280 -1.3426 33 1 3.1013 -2.5446 -0.9281 34 1 0.7449 -1.0604 -5.1239 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988217221.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:18 Heat of formation + Delta-G solvation = 27.414094 kcal Electronic energy + Delta-G solvation = -20040.859308 eV Core-core repulsion = 16907.760296 eV Total energy + Delta-G solvation = -3133.099012 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.29433 -40.77464 -38.75555 -36.32600 -34.88253 -33.26366 -32.68847 -29.91738 -28.55833 -26.66427 -25.75920 -24.64537 -22.55653 -21.94782 -20.46868 -20.33387 -19.41532 -18.02352 -17.76527 -17.18722 -16.77688 -16.42589 -16.00458 -15.69127 -15.34327 -14.95700 -14.63423 -14.33873 -13.65228 -13.33348 -13.28727 -13.16931 -12.75535 -12.66916 -12.50276 -12.43454 -12.31903 -12.10240 -11.90950 -11.84799 -11.75717 -11.22712 -11.08188 -10.83981 -10.30734 -9.73508 -9.17080 -8.37398 -5.33592 -0.66873 0.34029 0.42789 0.58295 1.61159 1.70094 1.79386 1.86410 1.94399 2.72217 3.15132 3.38465 3.48369 3.68776 3.77205 3.81510 4.05633 4.10947 4.23839 4.38895 4.41878 4.43556 4.69641 4.78714 4.85736 5.05103 5.09236 5.14710 5.25014 5.35277 5.48165 5.62128 6.30097 6.50514 6.87088 7.07311 7.96788 8.08083 9.13900 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.005740 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.533978 B = 4877.108793 C = 6422.229998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.137 3.863 3 H 0.095 0.905 4 C -0.126 4.126 5 C 0.166 3.834 6 H 0.070 0.930 7 N -0.735 5.735 8 C -0.331 4.331 9 H 0.070 0.930 10 C -0.099 4.099 11 N -0.975 5.975 12 Si 1.124 2.876 13 H -0.296 1.296 14 H -0.277 1.277 15 H -0.278 1.278 16 C 0.109 3.891 17 N -0.592 5.592 18 C 0.613 3.387 19 O -0.544 6.544 20 C -0.006 4.006 21 C 0.093 3.907 22 N -0.592 5.592 23 S 0.768 5.232 24 N -0.563 5.563 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.041 0.959 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.362 0.638 31 H 0.244 0.756 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.287 8.349 -12.866 16.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.035 3.965 3 H 0.113 0.887 4 C -0.165 4.165 5 C 0.055 3.945 6 H 0.088 0.912 7 N -0.375 5.375 8 C -0.462 4.462 9 H 0.088 0.912 10 C -0.291 4.291 11 N -0.623 5.623 12 Si 0.949 3.051 13 H -0.222 1.222 14 H -0.203 1.203 15 H -0.204 1.204 16 C -0.018 4.018 17 N -0.325 5.325 18 C 0.396 3.604 19 O -0.423 6.423 20 C -0.179 4.179 21 C -0.100 4.100 22 N -0.433 5.433 23 S 0.810 5.190 24 N -0.414 5.414 25 H 0.105 0.895 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.119 0.881 30 H 0.194 0.806 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -2.991 6.483 -13.108 14.926 hybrid contribution -2.616 1.597 0.010 3.065 sum -5.607 8.080 -13.098 16.379 Atomic orbital electron populations 1.22059 0.92844 1.02112 1.03919 1.22101 0.95832 0.95751 0.82820 0.88671 1.23113 0.95397 1.00465 0.97530 1.21385 0.94975 0.89001 0.89118 0.91163 1.42496 1.04098 1.24042 1.66881 1.20374 0.84653 1.07501 1.33677 0.91206 1.27104 1.09998 0.93792 0.98183 1.71000 1.01492 1.39501 1.50284 0.82674 0.69899 0.75800 0.76717 1.22200 1.20273 1.20385 1.22828 0.85513 0.95567 0.97844 1.48458 1.28094 1.47124 1.08778 1.16577 0.82843 0.80495 0.80451 1.90732 1.25117 1.44545 1.81897 1.22469 0.94742 1.03217 0.97518 1.23912 1.01708 0.97052 0.87280 1.72235 1.13776 1.18290 1.39048 1.78977 1.21366 1.34126 0.84499 1.72660 1.19258 1.15510 1.33946 0.89509 0.90708 0.93933 0.91507 0.88055 0.80571 0.94537 0.92158 0.92924 0.75163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 8.59 71.98 0.62 -3.12 16 2 C 0.14 3.70 3.77 45.47 0.17 3.87 16 3 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 4 C -0.13 -3.75 6.13 31.99 0.20 -3.55 16 5 C 0.17 6.18 3.61 46.18 0.17 6.34 16 6 H 0.07 2.61 8.09 -2.39 -0.02 2.59 16 7 N -0.73 -35.07 5.15 -317.32 -1.63 -36.71 16 8 C -0.33 -17.71 9.96 84.03 0.84 -16.87 16 9 H 0.07 3.63 7.83 -2.91 -0.02 3.60 16 10 C -0.10 -5.57 5.50 84.86 0.47 -5.10 16 11 N -0.98 -59.53 13.70 21.65 0.30 -59.23 16 12 Si 1.12 50.29 29.92 68.60 2.05 52.34 16 13 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 14 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 15 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 16 C 0.11 3.88 5.24 86.73 0.45 4.33 16 17 N -0.59 -18.55 3.24 -791.61 -2.57 -21.11 16 18 C 0.61 19.00 7.63 86.76 0.66 19.66 16 19 O -0.54 -17.46 14.52 -3.90 -0.06 -17.51 16 20 C -0.01 -0.17 6.71 41.98 0.28 0.11 16 21 C 0.09 2.15 11.22 85.22 0.96 3.11 16 22 N -0.59 -13.51 11.41 -92.42 -1.05 -14.56 16 23 S 0.77 16.56 23.69 -56.49 -1.34 15.22 16 24 N -0.56 -16.25 8.65 -80.61 -0.70 -16.95 16 25 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 2.00 6.09 -2.38 -0.01 1.99 16 27 H 0.04 1.14 8.14 -2.39 -0.02 1.13 16 28 H 0.07 2.12 7.92 -2.39 -0.02 2.10 16 29 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.36 18.25 6.59 -92.71 -0.61 17.64 16 31 H 0.24 14.85 6.77 -92.71 -0.63 14.22 16 32 H 0.06 2.19 7.68 -2.39 -0.02 2.17 16 33 H 0.05 2.16 7.46 -2.39 -0.02 2.14 16 34 H 0.23 4.16 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -66.52 299.03 0.48 -66.04 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.67 Total: 23.71 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 4.81 Total: 8.78 kcal Atomic # 7 Polarization: -142.91 SS G_CDS: -5.66 Total: -148.57 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.06 Total: -17.51 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 2.05 Total: 52.34 kcal Atomic # 16 Polarization: 16.56 SS G_CDS: -1.34 Total: 15.22 kcal Total: -66.52 0.48 -66.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988217221.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.449 kcal (2) G-P(sol) polarization free energy of solvation -66.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds