Wall clock time and date at job start Tue Mar 31 2020 06:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.99631 * 2 1 4 4 C 1.54325 * 109.88304 * 238.90512 * 2 1 3 5 5 C 1.55154 * 102.94303 * 218.39038 * 4 2 1 6 6 H 1.09008 * 111.00345 * 277.42446 * 5 4 2 7 7 N 1.46496 * 111.00463 * 153.57766 * 5 4 2 8 8 C 1.36940 * 120.00174 * 161.35219 * 7 5 4 9 9 H 1.08003 * 119.99978 * 359.97438 * 8 7 5 10 10 C 1.38805 * 120.00135 * 180.02562 * 8 7 5 11 11 N 1.31620 * 120.00135 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00002 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.46862 * 90.00609 * 12 10 8 14 14 H 1.48504 * 109.47369 * 210.00040 * 12 10 8 15 15 H 1.48496 * 109.47052 * 330.00325 * 12 10 8 16 16 C 1.54908 * 101.58289 * 35.49976 * 5 4 2 17 17 N 1.47290 * 109.87458 * 121.05867 * 2 1 3 18 18 C 1.34774 * 125.79121 * 298.35971 * 17 2 1 19 19 O 1.21568 * 120.00248 * 0.02562 * 18 17 2 20 20 C 1.47754 * 119.99634 * 180.02562 * 18 17 2 21 21 C 1.39353 * 124.11059 * 179.72266 * 20 18 17 22 22 N 1.30099 * 112.13935 * 179.84310 * 21 20 18 23 23 S 1.55917 * 108.75564 * 0.40475 * 22 21 20 24 24 N 1.31485 * 124.11886 * 0.02562 * 20 18 17 25 25 H 1.08998 * 109.47192 * 181.09685 * 1 2 3 26 26 H 1.09005 * 109.47110 * 301.09885 * 1 2 3 27 27 H 1.09003 * 109.47228 * 61.09220 * 1 2 3 28 28 H 1.09002 * 110.72180 * 100.02274 * 4 2 1 29 29 H 1.08994 * 110.87038 * 336.82305 * 4 2 1 30 30 H 0.97000 * 120.00071 * 341.34892 * 7 5 4 31 31 H 0.96995 * 120.00222 * 180.02562 * 11 10 8 32 32 H 1.09002 * 110.36632 * 81.83114 * 16 5 4 33 33 H 1.08995 * 110.36781 * 204.04351 * 16 5 4 34 34 H 1.08000 * 123.93289 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 6 3.2876 -1.5142 -0.6924 6 1 4.1654 -0.8688 -0.6605 7 7 3.5531 -2.7195 -1.4817 8 6 4.7818 -3.3211 -1.4205 9 1 5.5551 -2.9069 -0.7906 10 6 5.0335 -4.4628 -2.1687 11 7 6.2143 -5.0414 -2.1095 12 14 3.6962 -5.1790 -3.2587 13 1 3.7837 -4.5738 -4.6120 14 1 3.8760 -6.6495 -3.3616 15 1 2.3658 -4.8830 -2.6691 16 6 2.8145 -1.8794 0.7367 17 7 2.0307 -0.7146 1.1866 18 6 1.8103 -0.3640 2.4691 19 8 1.1451 0.6210 2.7243 20 6 2.3772 -1.1770 3.5650 21 6 2.2082 -0.8908 4.9183 22 7 2.8034 -1.7603 5.6814 23 16 3.5094 -2.8184 4.7797 24 7 3.1071 -2.2551 3.3820 25 1 -0.3633 -1.0275 0.0197 26 1 -0.3633 0.5308 0.8800 27 1 -0.3634 0.4968 -0.8996 28 1 2.3529 -0.0460 -2.0201 29 1 1.3065 -1.4458 -1.6211 30 1 2.8587 -3.0914 -2.0477 31 1 6.3903 -5.8390 -2.6327 32 1 2.1886 -2.7715 0.7128 33 1 3.6716 -2.0357 1.3917 34 1 1.6460 -0.0471 5.2905 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988217224.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:22 Heat of formation + Delta-G solvation = 52.452777 kcal Electronic energy + Delta-G solvation = -20025.175210 eV Core-core repulsion = 16893.161956 eV Total energy + Delta-G solvation = -3132.013253 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.19718 -39.52620 -37.44925 -34.41211 -33.80585 -31.64745 -31.44170 -28.96541 -27.47179 -25.52940 -24.07409 -23.14035 -21.16292 -20.47831 -19.43987 -19.13420 -17.71258 -16.90520 -16.48664 -15.99294 -15.50558 -14.98475 -14.48086 -14.09858 -13.71612 -13.57036 -13.20704 -12.66679 -12.47912 -12.36462 -12.26525 -11.89937 -11.55964 -11.47923 -11.27303 -11.21169 -11.05453 -10.73303 -10.53225 -10.42836 -10.12557 -9.94391 -9.67300 -9.30389 -9.05393 -8.47785 -7.40823 -5.85930 -3.23804 0.39063 1.35546 1.48073 1.55544 2.98153 3.13209 3.31175 3.33768 3.39944 4.31883 4.50626 4.57428 4.89212 5.00134 5.07444 5.08762 5.32126 5.35056 5.48823 5.53906 5.63364 5.71498 5.88975 5.99566 6.12272 6.19280 6.28594 6.35232 6.46605 6.60800 6.73083 7.57673 7.88206 8.08706 8.32564 9.09167 9.81234 9.99270 11.31771 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.016425 B = 0.005789 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.356706 B = 4835.594499 C = 6209.483930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.079 0.921 4 C -0.140 4.140 5 C 0.175 3.825 6 H 0.073 0.927 7 N -0.735 5.735 8 C -0.251 4.251 9 H 0.092 0.908 10 C 0.010 3.990 11 N -0.929 5.929 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.277 1.277 16 C 0.077 3.923 17 N -0.589 5.589 18 C 0.615 3.385 19 O -0.538 6.538 20 C 0.014 3.986 21 C 0.086 3.914 22 N -0.584 5.584 23 S 0.711 5.289 24 N -0.525 5.525 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.364 0.636 31 H 0.261 0.739 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.364 7.699 10.306 15.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.097 0.903 4 C -0.179 4.179 5 C 0.064 3.936 6 H 0.090 0.910 7 N -0.377 5.377 8 C -0.380 4.380 9 H 0.110 0.890 10 C -0.187 4.187 11 N -0.576 5.576 12 Si 0.713 3.287 13 H -0.209 1.209 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.048 4.048 17 N -0.321 5.321 18 C 0.397 3.603 19 O -0.415 6.415 20 C -0.161 4.161 21 C -0.108 4.108 22 N -0.425 5.425 23 S 0.753 5.247 24 N -0.375 5.375 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.198 0.802 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -8.308 6.459 11.091 15.289 hybrid contribution -1.832 0.643 -1.181 2.272 sum -10.140 7.102 9.910 15.858 Atomic orbital electron populations 1.22141 0.94784 1.02335 1.02704 1.21639 0.94445 0.96259 0.83973 0.90291 1.23059 0.99031 0.99823 0.95991 1.21311 0.94854 0.88767 0.88715 0.90959 1.42641 1.13688 1.29304 1.52059 1.19057 0.88921 1.06758 1.23290 0.89011 1.24665 0.96394 0.97809 0.99781 1.69694 1.21003 1.22310 1.44603 0.86581 0.82016 0.78770 0.81305 1.20943 1.21658 1.20304 1.23664 0.95616 0.86635 0.98920 1.48478 1.50730 1.28970 1.03907 1.16372 0.80261 0.83200 0.80424 1.90781 1.40811 1.26868 1.83056 1.22508 1.02349 0.95189 0.96045 1.23722 0.99414 0.99814 0.87858 1.72238 1.18326 1.11848 1.40038 1.79296 1.37502 1.25805 0.82065 1.72922 1.17084 1.14770 1.32679 0.92522 0.91350 0.91592 0.89843 0.90485 0.80239 0.92918 0.91382 0.88666 0.77193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.10 37.16 0.34 -1.64 16 2 C 0.14 1.90 3.47 -66.81 -0.23 1.67 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.14 -1.98 6.10 -24.90 -0.15 -2.13 16 5 C 0.18 3.14 3.68 -65.79 -0.24 2.90 16 6 H 0.07 1.34 8.13 -51.92 -0.42 0.92 16 7 N -0.74 -16.20 5.08 -51.35 -0.26 -16.46 16 8 C -0.25 -6.68 10.47 -15.06 -0.16 -6.84 16 9 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 10 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 11 N -0.93 -28.13 13.97 55.49 0.78 -27.35 16 12 Si 0.88 21.15 27.73 -169.99 -4.71 16.43 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.28 -6.21 6.52 56.52 0.37 -5.84 16 16 C 0.08 1.33 5.77 -2.53 -0.01 1.31 16 17 N -0.59 -9.07 3.07 -163.95 -0.50 -9.58 16 18 C 0.61 9.53 7.65 -12.37 -0.09 9.43 16 19 O -0.54 -8.89 15.88 5.31 0.08 -8.81 16 20 C 0.01 0.20 6.71 -83.71 -0.56 -0.36 16 21 C 0.09 1.04 11.22 -17.87 -0.20 0.84 16 22 N -0.58 -7.06 11.41 19.43 0.22 -6.84 16 23 S 0.71 8.03 23.69 -107.50 -2.55 5.48 16 24 N -0.53 -7.55 8.29 23.17 0.19 -7.36 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.91 6.92 -51.93 -0.36 0.55 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.07 7.71 -51.93 -0.40 0.67 16 30 H 0.36 7.87 5.57 -40.82 -0.23 7.64 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.10 1.74 6.08 -51.93 -0.32 1.43 16 34 H 0.21 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 299.08 15.07 4.51 4.51 Total: -1.00 -31.14 299.08 -7.51 -38.65 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -3.85 Total: 5.97 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -1.41 Total: 5.36 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: 0.42 Total: -67.59 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.08 Total: -8.81 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.71 Total: 16.43 kcal Atomic # 16 Polarization: 8.03 SS G_CDS: -2.55 Total: 5.48 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.14 -7.51 -38.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988217224.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.102 kcal (2) G-P(sol) polarization free energy of solvation -31.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds