Wall clock time and date at job start Tue Mar 31 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.87524 * 2 1 4 4 C 1.54331 * 109.88083 * 238.98335 * 2 1 3 5 5 C 1.55149 * 102.94321 * 218.23303 * 4 2 1 6 6 H 1.08993 * 111.00756 * 277.39214 * 5 4 2 7 7 N 1.46504 * 111.00269 * 153.57378 * 5 4 2 8 8 C 1.36943 * 119.99781 * 155.00324 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48496 * 109.47031 * 59.99836 * 12 10 8 14 14 H 1.48497 * 109.47267 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47169 * 300.00118 * 12 10 8 16 16 C 1.54914 * 101.58116 * 35.50250 * 5 4 2 17 17 N 1.47014 * 110.01238 * 121.10037 * 2 1 3 18 18 C 1.34781 * 125.65005 * 298.47488 * 17 2 1 19 19 O 1.21622 * 119.99559 * 359.97438 * 18 17 2 20 20 C 1.47168 * 120.00290 * 180.02562 * 18 17 2 21 21 C 1.38246 * 128.47936 * 180.02562 * 20 18 17 22 22 N 1.31237 * 111.89320 * 179.97438 * 21 20 18 23 23 N 1.27342 * 120.03460 * 0.02562 * 22 21 20 24 24 S 1.56639 * 109.74238 * 359.69224 * 23 22 21 25 25 H 1.08996 * 109.46835 * 181.01758 * 1 2 3 26 26 H 1.08999 * 109.46527 * 301.01518 * 1 2 3 27 27 H 1.08998 * 109.46762 * 61.01443 * 1 2 3 28 28 H 1.09007 * 110.71733 * 99.86945 * 4 2 1 29 29 H 1.08999 * 110.71890 * 336.60416 * 4 2 1 30 30 H 0.97000 * 120.00410 * 335.00650 * 7 5 4 31 31 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 32 32 H 1.09004 * 110.36203 * 81.82860 * 16 5 4 33 33 H 1.08995 * 110.36707 * 204.14386 * 16 5 4 34 34 H 1.08005 * 124.05061 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 -1.2438 5 6 3.2900 -1.5101 -0.6955 6 1 4.1665 -0.8631 -0.6650 7 7 3.5570 -2.7145 -1.4857 8 6 4.8214 -3.2387 -1.5288 9 1 5.6218 -2.7640 -0.9806 10 6 5.0756 -4.3766 -2.2821 11 7 4.1004 -4.9548 -2.9506 12 14 6.8020 -5.0872 -2.3471 13 1 7.2358 -5.4598 -0.9767 14 1 6.8085 -6.2935 -3.2131 15 1 7.7340 -4.0733 -2.9028 16 6 2.8196 -1.8770 0.7341 17 7 2.0332 -0.7135 1.1828 18 6 1.8113 -0.3628 2.4651 19 8 1.1437 0.6215 2.7195 20 6 2.3779 -1.1700 3.5575 21 6 2.2624 -0.9741 4.9211 22 7 2.9008 -1.8955 5.6036 23 7 3.5259 -2.8222 4.9936 24 16 3.3693 -2.6362 3.4462 25 1 -0.3633 -1.0275 0.0183 26 1 -0.3632 0.5295 0.8808 27 1 -0.3633 0.4980 -0.8989 28 1 2.3503 -0.0432 -2.0213 29 1 1.3061 -1.4456 -1.6187 30 1 2.8383 -3.1407 -1.9784 31 1 4.2780 -5.7501 -3.4767 32 1 2.1956 -2.7704 0.7105 33 1 3.6779 -2.0299 1.3883 34 1 1.7121 -0.1608 5.3707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988241156.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:08 Heat of formation + Delta-G solvation = 58.131904 kcal Electronic energy + Delta-G solvation = -19894.802058 eV Core-core repulsion = 16763.035070 eV Total energy + Delta-G solvation = -3131.766988 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.82283 -40.04620 -37.55618 -34.37398 -32.70422 -31.60436 -31.25512 -28.63363 -27.49417 -25.69577 -24.16083 -23.39252 -21.28508 -20.47314 -19.63639 -18.79515 -17.49936 -16.96822 -16.48071 -15.93219 -15.44599 -14.81821 -14.57900 -14.20283 -13.84446 -13.51656 -13.37206 -12.89961 -12.65721 -12.57049 -12.30544 -12.02253 -11.76561 -11.38209 -11.19072 -10.96106 -10.80008 -10.48442 -10.25766 -10.17102 -10.09220 -9.95362 -9.88273 -9.78696 -9.14055 -8.64594 -7.24340 -5.96777 -3.28978 -0.28541 0.80788 1.49471 1.93108 2.81438 2.94686 3.33245 3.38787 3.39555 3.96674 4.32455 4.47236 4.66272 4.87300 4.92896 5.07888 5.33869 5.36036 5.47624 5.51737 5.62675 5.64645 5.82877 5.91949 6.00944 6.16644 6.25462 6.28914 6.41640 6.63422 7.40452 7.52176 7.61645 7.96529 8.20012 9.32617 9.83352 10.18331 11.24596 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.016091 B = 0.005855 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.737743 B = 4780.941374 C = 6271.318237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.078 0.922 4 C -0.138 4.138 5 C 0.178 3.822 6 H 0.073 0.927 7 N -0.708 5.708 8 C -0.257 4.257 9 H 0.073 0.927 10 C -0.003 4.003 11 N -0.927 5.927 12 Si 0.907 3.093 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.284 1.284 16 C 0.059 3.941 17 N -0.600 5.600 18 C 0.612 3.388 19 O -0.530 6.530 20 C -0.290 4.290 21 C 0.066 3.934 22 N -0.259 5.259 23 N -0.285 5.285 24 S 0.465 5.535 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.389 0.611 31 H 0.259 0.741 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.147 7.999 7.911 12.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.096 0.904 4 C -0.177 4.177 5 C 0.064 3.936 6 H 0.091 0.909 7 N -0.347 5.347 8 C -0.387 4.387 9 H 0.091 0.909 10 C -0.200 4.200 11 N -0.573 5.573 12 Si 0.738 3.262 13 H -0.210 1.210 14 H -0.215 1.215 15 H -0.210 1.210 16 C -0.069 4.069 17 N -0.333 5.333 18 C 0.398 3.602 19 O -0.408 6.408 20 C -0.431 4.431 21 C -0.102 4.102 22 N -0.123 5.123 23 N -0.265 5.265 24 S 0.602 5.398 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.223 0.777 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -4.218 6.837 8.493 11.691 hybrid contribution -0.113 0.514 -0.102 0.536 sum -4.331 7.351 8.391 11.967 Atomic orbital electron populations 1.22148 0.94695 1.02468 1.02731 1.21602 0.94521 0.96211 0.83831 0.90362 1.23090 0.99089 0.99808 0.95676 1.21242 0.94969 0.89762 0.87618 0.90938 1.42327 1.09679 1.27699 1.54989 1.19202 0.86668 1.07385 1.25493 0.90856 1.24770 0.97672 0.98191 0.99390 1.69636 1.30967 1.22352 1.34364 0.86281 0.83866 0.78486 0.77614 1.20979 1.21550 1.21035 1.23935 0.94235 0.88102 1.00653 1.48478 1.51332 1.29201 1.04281 1.16105 0.80327 0.83479 0.80288 1.90801 1.40203 1.26782 1.83046 1.28065 1.11192 1.04883 0.98997 1.24413 0.98207 0.99060 0.88521 1.70817 1.08625 1.00631 1.32233 1.78612 1.20112 1.20363 1.07425 1.83561 1.32782 1.14095 1.09372 0.92361 0.91471 0.91455 0.89800 0.90047 0.77668 0.93112 0.90084 0.91437 0.77139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.10 37.16 0.34 -1.59 16 2 C 0.14 1.82 3.45 -66.95 -0.23 1.59 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.14 -1.86 6.12 -24.90 -0.15 -2.02 16 5 C 0.18 2.94 3.71 -65.78 -0.24 2.70 16 6 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 7 N -0.71 -15.22 5.24 -51.35 -0.27 -15.49 16 8 C -0.26 -6.31 9.96 -15.06 -0.15 -6.46 16 9 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 10 C 0.00 -0.08 5.50 -17.43 -0.10 -0.17 16 11 N -0.93 -25.63 13.06 55.49 0.72 -24.91 16 12 Si 0.91 20.67 29.55 -169.99 -5.02 15.65 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 C 0.06 0.88 5.44 -2.53 -0.01 0.86 16 17 N -0.60 -8.45 3.07 -164.37 -0.50 -8.95 16 18 C 0.61 9.00 7.63 -12.63 -0.10 8.91 16 19 O -0.53 -8.76 16.03 5.26 0.08 -8.67 16 20 C -0.29 -3.90 6.66 -35.95 -0.24 -4.14 16 21 C 0.07 0.82 11.55 -17.80 -0.21 0.62 16 22 N -0.26 -3.69 11.54 30.36 0.35 -3.34 16 23 N -0.28 -4.17 12.51 60.35 0.75 -3.42 16 24 S 0.47 6.11 19.60 -107.50 -2.11 4.00 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.88 6.90 -51.93 -0.36 0.52 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.08 1.05 8.14 -51.92 -0.42 0.62 16 29 H 0.08 1.12 7.71 -51.93 -0.40 0.72 16 30 H 0.39 8.95 7.76 -40.82 -0.32 8.63 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.07 0.99 5.17 -33.95 -0.18 0.81 16 34 H 0.21 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 301.61 15.07 4.55 4.55 Total: -1.00 -28.61 301.61 -6.29 -34.90 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -3.75 Total: 5.39 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -1.09 Total: 0.30 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 1.06 Total: -56.11 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.08 Total: -8.67 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 6.11 SS G_CDS: -2.11 Total: 4.00 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.61 -6.29 -34.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988241156.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.029 kcal (2) G-P(sol) polarization free energy of solvation -28.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds