Wall clock time and date at job start Tue Mar 31 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.87524 * 2 1 4 4 C 1.54331 * 109.88083 * 238.98335 * 2 1 3 5 5 C 1.55149 * 102.94321 * 218.23303 * 4 2 1 6 6 H 1.08993 * 111.00756 * 277.39214 * 5 4 2 7 7 N 1.46504 * 111.00269 * 153.57378 * 5 4 2 8 8 C 1.36943 * 119.99781 * 155.00324 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48496 * 109.47031 * 59.99836 * 12 10 8 14 14 H 1.48497 * 109.47267 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47169 * 300.00118 * 12 10 8 16 16 C 1.54914 * 101.58116 * 35.50250 * 5 4 2 17 17 N 1.47014 * 110.01238 * 121.10037 * 2 1 3 18 18 C 1.34781 * 125.65005 * 298.47488 * 17 2 1 19 19 O 1.21622 * 119.99559 * 359.97438 * 18 17 2 20 20 C 1.47168 * 120.00290 * 180.02562 * 18 17 2 21 21 C 1.38246 * 128.47936 * 180.02562 * 20 18 17 22 22 N 1.31237 * 111.89320 * 179.97438 * 21 20 18 23 23 N 1.27342 * 120.03460 * 0.02562 * 22 21 20 24 24 S 1.56639 * 109.74238 * 359.69224 * 23 22 21 25 25 H 1.08996 * 109.46835 * 181.01758 * 1 2 3 26 26 H 1.08999 * 109.46527 * 301.01518 * 1 2 3 27 27 H 1.08998 * 109.46762 * 61.01443 * 1 2 3 28 28 H 1.09007 * 110.71733 * 99.86945 * 4 2 1 29 29 H 1.08999 * 110.71890 * 336.60416 * 4 2 1 30 30 H 0.97000 * 120.00410 * 335.00650 * 7 5 4 31 31 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 32 32 H 1.09004 * 110.36203 * 81.82860 * 16 5 4 33 33 H 1.08995 * 110.36707 * 204.14386 * 16 5 4 34 34 H 1.08005 * 124.05061 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 -1.2438 5 6 3.2900 -1.5101 -0.6955 6 1 4.1665 -0.8631 -0.6650 7 7 3.5570 -2.7145 -1.4857 8 6 4.8214 -3.2387 -1.5288 9 1 5.6218 -2.7640 -0.9806 10 6 5.0756 -4.3766 -2.2821 11 7 4.1004 -4.9548 -2.9506 12 14 6.8020 -5.0872 -2.3471 13 1 7.2358 -5.4598 -0.9767 14 1 6.8085 -6.2935 -3.2131 15 1 7.7340 -4.0733 -2.9028 16 6 2.8196 -1.8770 0.7341 17 7 2.0332 -0.7135 1.1828 18 6 1.8113 -0.3628 2.4651 19 8 1.1437 0.6215 2.7195 20 6 2.3779 -1.1700 3.5575 21 6 2.2624 -0.9741 4.9211 22 7 2.9008 -1.8955 5.6036 23 7 3.5259 -2.8222 4.9936 24 16 3.3693 -2.6362 3.4462 25 1 -0.3633 -1.0275 0.0183 26 1 -0.3632 0.5295 0.8808 27 1 -0.3633 0.4980 -0.8989 28 1 2.3503 -0.0432 -2.0213 29 1 1.3061 -1.4456 -1.6187 30 1 2.8383 -3.1407 -1.9784 31 1 4.2780 -5.7501 -3.4767 32 1 2.1956 -2.7704 0.7105 33 1 3.6779 -2.0299 1.3883 34 1 1.7121 -0.1608 5.3707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988241156.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:08 Heat of formation + Delta-G solvation = 39.045207 kcal Electronic energy + Delta-G solvation = -19895.629720 eV Core-core repulsion = 16763.035070 eV Total energy + Delta-G solvation = -3132.594649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.90849 -41.21483 -38.80563 -36.00525 -33.82082 -33.24418 -32.34963 -30.13034 -28.61301 -26.81782 -25.83259 -24.61541 -22.49467 -21.73267 -20.71996 -19.93190 -19.21983 -18.11032 -17.72032 -17.09309 -16.77261 -16.18996 -15.81200 -15.54340 -15.29812 -14.91787 -14.57194 -14.31085 -13.82327 -13.75753 -13.43378 -13.14383 -12.92095 -12.83078 -12.78095 -12.45817 -12.17143 -12.03147 -11.79680 -11.53045 -11.36156 -11.19214 -11.09244 -10.93219 -10.82772 -9.82874 -9.04388 -7.92218 -5.21829 -1.36914 -0.24525 0.41658 0.86987 1.54108 1.54459 1.60085 1.67965 1.81256 2.58706 2.91730 3.23839 3.38039 3.63554 3.77062 3.77576 3.94632 4.17298 4.23783 4.44453 4.51575 4.55807 4.62228 4.72873 4.83399 5.06018 5.12130 5.24004 5.34159 5.40502 5.58611 6.23412 6.28883 6.55273 6.80715 7.37782 8.07695 8.31645 9.30008 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.016091 B = 0.005855 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.737743 B = 4780.941374 C = 6271.318237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 H 0.088 0.912 4 C -0.125 4.125 5 C 0.170 3.830 6 H 0.074 0.926 7 N -0.719 5.719 8 C -0.244 4.244 9 H 0.082 0.918 10 C -0.063 4.063 11 N -0.963 5.963 12 Si 0.961 3.039 13 H -0.277 1.277 14 H -0.301 1.301 15 H -0.279 1.279 16 C 0.069 3.931 17 N -0.598 5.598 18 C 0.615 3.385 19 O -0.548 6.548 20 C -0.300 4.300 21 C 0.077 3.923 22 N -0.274 5.274 23 N -0.304 5.304 24 S 0.484 5.516 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.379 0.621 31 H 0.251 0.749 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.149 9.201 8.517 13.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.038 3.962 3 H 0.106 0.894 4 C -0.164 4.164 5 C 0.058 3.942 6 H 0.092 0.908 7 N -0.357 5.357 8 C -0.376 4.376 9 H 0.100 0.900 10 C -0.256 4.256 11 N -0.613 5.613 12 Si 0.791 3.209 13 H -0.204 1.204 14 H -0.227 1.227 15 H -0.205 1.205 16 C -0.059 4.059 17 N -0.331 5.331 18 C 0.402 3.598 19 O -0.427 6.427 20 C -0.441 4.441 21 C -0.090 4.090 22 N -0.137 5.137 23 N -0.284 5.284 24 S 0.620 5.380 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.212 0.788 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -4.212 8.083 9.138 12.906 hybrid contribution -0.148 0.237 -0.236 0.366 sum -4.360 8.320 8.901 12.940 Atomic orbital electron populations 1.22091 0.93694 1.02299 1.03274 1.21716 0.95285 0.96350 0.82842 0.89405 1.23000 0.97455 0.99670 0.96291 1.21415 0.96477 0.88299 0.87980 0.90843 1.42419 1.08458 1.29030 1.55811 1.19584 0.87974 1.06497 1.23523 0.90031 1.25416 1.00439 0.99359 1.00386 1.69770 1.32513 1.22905 1.36114 0.85405 0.80682 0.77391 0.77445 1.20354 1.22732 1.20545 1.23602 0.94440 0.88219 0.99593 1.48471 1.51111 1.28887 1.04625 1.16148 0.79994 0.83247 0.80435 1.90796 1.41077 1.27590 1.83258 1.28012 1.11844 1.05129 0.99111 1.24803 0.97216 0.98868 0.88147 1.70838 1.09111 1.00984 1.32719 1.78551 1.20752 1.20942 1.08133 1.83448 1.32195 1.13726 1.08596 0.92804 0.92571 0.89311 0.88341 0.90170 0.78770 0.94012 0.90568 0.91023 0.74640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 9.10 71.98 0.66 -2.70 16 2 C 0.14 3.30 3.45 45.35 0.16 3.45 16 3 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 4 C -0.13 -3.14 6.12 31.78 0.19 -2.94 16 5 C 0.17 5.36 3.71 46.38 0.17 5.53 16 6 H 0.07 2.33 8.09 -2.39 -0.02 2.31 16 7 N -0.72 -30.36 5.24 -316.38 -1.66 -32.02 16 8 C -0.24 -11.79 9.96 84.03 0.84 -10.95 16 9 H 0.08 3.73 7.83 -2.91 -0.02 3.71 16 10 C -0.06 -3.26 5.50 84.86 0.47 -2.79 16 11 N -0.96 -53.92 13.06 21.65 0.28 -53.64 16 12 Si 0.96 42.38 29.55 68.60 2.03 44.41 16 13 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 14 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 15 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 16 C 0.07 1.97 5.44 86.86 0.47 2.44 16 17 N -0.60 -15.72 3.07 -792.18 -2.43 -18.15 16 18 C 0.62 16.94 7.63 86.59 0.66 17.60 16 19 O -0.55 -17.03 16.03 -4.10 -0.07 -17.10 16 20 C -0.30 -7.53 6.66 24.62 0.16 -7.36 16 21 C 0.08 1.79 11.55 84.78 0.98 2.77 16 22 N -0.27 -7.38 11.54 -57.87 -0.67 -8.05 16 23 N -0.30 -8.54 12.51 37.02 0.46 -8.07 16 24 S 0.48 12.07 19.60 -56.49 -1.11 10.97 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.36 6.90 -2.39 -0.02 1.34 16 27 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 29 H 0.08 2.07 7.71 -2.39 -0.02 2.05 16 30 H 0.38 17.42 7.76 -92.71 -0.72 16.70 16 31 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 32 H 0.08 2.27 8.14 -2.38 -0.02 2.26 16 33 H 0.07 1.98 5.17 -13.82 -0.07 1.91 16 34 H 0.24 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -59.68 301.61 1.96 -57.72 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.36 Total: 18.88 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 4.76 Total: 5.05 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -4.01 Total: -119.93 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.07 Total: -17.10 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 12.07 SS G_CDS: -1.11 Total: 10.97 kcal Total: -59.68 1.96 -57.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988241156.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.766 kcal (2) G-P(sol) polarization free energy of solvation -59.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds