Wall clock time and date at job start Tue Mar 31 2020 06:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.00297 * 2 1 4 4 C 1.54327 * 109.88311 * 238.89916 * 2 1 3 5 5 C 1.55156 * 102.94181 * 262.78124 * 4 2 1 6 6 H 1.08997 * 111.00714 * 82.61349 * 5 4 2 7 7 N 1.46503 * 110.99889 * 206.42102 * 5 4 2 8 8 C 1.36940 * 119.99702 * 204.99896 * 7 5 4 9 9 H 1.08001 * 120.00403 * 0.02562 * 8 7 5 10 10 C 1.38812 * 120.00018 * 180.02562 * 8 7 5 11 11 N 1.31623 * 120.00054 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00169 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47328 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47230 * 119.99768 * 12 10 8 15 15 H 1.48506 * 109.47173 * 239.99722 * 12 10 8 16 16 C 1.54908 * 101.58197 * 324.49449 * 5 4 2 17 17 N 1.47031 * 109.87989 * 121.09489 * 2 1 3 18 18 C 1.34775 * 125.64646 * 300.45554 * 17 2 1 19 19 O 1.21600 * 120.00005 * 359.97438 * 18 17 2 20 20 C 1.47449 * 119.99671 * 180.02562 * 18 17 2 21 21 C 1.37982 * 124.15243 * 179.97438 * 20 18 17 22 22 S 1.72104 * 104.03120 * 179.97438 * 21 20 18 23 23 N 1.56408 * 96.15533 * 0.02562 * 22 21 20 24 24 N 1.27413 * 109.87504 * 359.74566 * 23 22 21 25 25 H 1.08996 * 109.47804 * 181.09821 * 1 2 3 26 26 H 1.09006 * 109.46805 * 301.09952 * 1 2 3 27 27 H 1.09003 * 109.47205 * 61.09285 * 1 2 3 28 28 H 1.09001 * 110.71763 * 21.14458 * 4 2 1 29 29 H 1.08997 * 110.71798 * 144.41626 * 4 2 1 30 30 H 0.96997 * 120.00424 * 25.00514 * 7 5 4 31 31 H 0.96992 * 120.00284 * 180.02562 * 11 10 8 32 32 H 1.09000 * 110.36459 * 155.84880 * 16 5 4 33 33 H 1.09001 * 110.36573 * 278.06223 * 16 5 4 34 34 H 1.07998 * 127.98427 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2427 5 6 2.3517 -2.1696 -0.6922 6 1 1.4452 -2.7739 -0.6609 7 7 3.3935 -2.8314 -1.4815 8 6 3.4566 -4.1987 -1.5226 9 1 2.7380 -4.7892 -0.9735 10 6 4.4440 -4.8259 -2.2700 11 7 5.3194 -4.1063 -2.9396 12 14 4.5296 -6.6910 -2.3267 13 1 3.4396 -7.2620 -1.4953 14 1 4.3751 -7.1512 -3.7301 15 1 5.8423 -7.1425 -1.7993 16 6 2.8567 -1.8499 0.7369 17 7 2.0300 -0.7141 1.1840 18 6 1.7750 -0.3846 2.4658 19 8 1.0768 0.5783 2.7187 20 6 2.3436 -1.1912 3.5613 21 6 2.1391 -0.9317 4.9010 22 16 3.0226 -2.1703 5.7055 23 7 3.5463 -2.8717 4.4093 24 7 3.1116 -2.2597 3.3798 25 1 -0.3634 -1.0274 0.0197 26 1 -0.3633 0.5309 0.8800 27 1 -0.3634 0.4968 -0.8996 28 1 1.2918 -0.7891 -2.0200 29 1 2.9657 -0.2833 -1.6181 30 1 4.0387 -2.3011 -1.9749 31 1 6.0091 -4.5444 -3.4621 32 1 2.7086 -2.7080 1.3924 33 1 3.9096 -1.5687 0.7132 34 1 1.5587 -0.1353 5.3428 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989236541.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:28 Heat of formation + Delta-G solvation = 61.602615 kcal Electronic energy + Delta-G solvation = -19979.521328 eV Core-core repulsion = 16847.904841 eV Total energy + Delta-G solvation = -3131.616487 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.17127 -39.58403 -37.44686 -34.18502 -32.51656 -31.47219 -31.17211 -28.34184 -27.16441 -25.46624 -24.42147 -23.45851 -21.40367 -20.34651 -19.98467 -18.27643 -17.33791 -16.42752 -16.16162 -16.07684 -15.19629 -15.16694 -14.45301 -14.11667 -13.48442 -13.37941 -13.05067 -12.96795 -12.57279 -12.34173 -12.22100 -11.89855 -11.82724 -11.19715 -10.96978 -10.80416 -10.63942 -10.26317 -10.20515 -10.17719 -10.03329 -10.01171 -9.90014 -9.72636 -8.97531 -8.41533 -7.04734 -5.81324 -3.11526 -0.05171 0.80196 1.43962 1.44475 3.04971 3.17900 3.42790 3.49119 3.50871 3.80380 4.51746 4.60158 4.69729 4.99413 5.14102 5.20555 5.26321 5.48260 5.62149 5.66183 5.85522 5.91720 6.10837 6.22054 6.26753 6.33965 6.46865 6.57920 6.71009 6.89263 7.43504 7.65369 7.69817 8.14285 8.36347 9.48470 10.01566 10.36607 11.40933 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015463 B = 0.005503 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.309903 B = 5087.099017 C = 6609.264343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.074 0.926 4 C -0.139 4.139 5 C 0.173 3.827 6 H 0.067 0.933 7 N -0.710 5.710 8 C -0.244 4.244 9 H 0.073 0.927 10 C -0.009 4.009 11 N -0.931 5.931 12 Si 0.907 3.093 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.291 1.291 16 C 0.071 3.929 17 N -0.587 5.587 18 C 0.612 3.388 19 O -0.541 6.541 20 C -0.014 4.014 21 C -0.240 4.240 22 S 0.440 5.560 23 N -0.284 5.284 24 N -0.194 5.194 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.387 0.613 31 H 0.256 0.744 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.465 8.139 15.193 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.092 0.908 4 C -0.178 4.178 5 C 0.060 3.940 6 H 0.085 0.915 7 N -0.349 5.349 8 C -0.375 4.375 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.578 5.578 12 Si 0.738 3.262 13 H -0.205 1.205 14 H -0.218 1.218 15 H -0.218 1.218 16 C -0.055 4.055 17 N -0.318 5.318 18 C 0.395 3.605 19 O -0.418 6.418 20 C -0.162 4.162 21 C -0.398 4.398 22 S 0.577 5.423 23 N -0.264 5.264 24 N -0.064 5.064 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.221 0.779 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -6.758 6.927 15.804 18.532 hybrid contribution -0.342 0.295 -0.779 0.900 sum -7.100 7.222 15.025 18.120 Atomic orbital electron populations 1.22145 0.94762 1.02500 1.02563 1.21602 0.94552 0.95979 0.84295 0.90809 1.23063 1.01793 0.97332 0.95597 1.21321 0.92905 0.91102 0.88679 0.91486 1.42307 1.33372 1.04070 1.55190 1.19303 1.11113 0.82474 1.24608 0.90907 1.24748 0.97927 0.97951 0.99887 1.69667 1.19028 1.34041 1.35100 0.86118 0.77435 0.85424 0.77209 1.20458 1.21829 1.21773 1.23829 0.94617 0.87520 0.99487 1.48473 1.48814 1.30696 1.03856 1.16285 0.80532 0.83152 0.80532 1.90779 1.39541 1.28252 1.83272 1.22728 1.02015 0.96763 0.94656 1.28813 1.06870 1.07505 0.96576 1.81465 1.29869 1.10962 1.20051 1.78853 1.23446 1.25429 0.98663 1.71847 1.08812 1.05297 1.20445 0.92296 0.91460 0.91652 0.89975 0.90456 0.77865 0.93442 0.88978 0.91079 0.77666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.05 37.16 0.34 -1.82 16 2 C 0.14 2.06 3.49 -66.95 -0.23 1.83 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.14 -2.19 6.14 -24.90 -0.15 -2.34 16 5 C 0.17 3.34 3.71 -65.78 -0.24 3.09 16 6 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 7 N -0.71 -17.18 5.24 -51.35 -0.27 -17.45 16 8 C -0.24 -6.62 9.96 -15.06 -0.15 -6.77 16 9 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 10 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 11 N -0.93 -27.61 13.06 55.49 0.72 -26.88 16 12 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 16 C 0.07 1.31 5.77 -2.53 -0.01 1.30 16 17 N -0.59 -9.68 3.08 -164.26 -0.51 -10.19 16 18 C 0.61 10.00 7.62 -12.51 -0.10 9.91 16 19 O -0.54 -9.37 15.70 5.28 0.08 -9.29 16 20 C -0.01 -0.21 6.76 -83.78 -0.57 -0.78 16 21 C -0.24 -2.53 11.21 30.64 0.34 -2.19 16 22 S 0.44 4.02 23.38 -107.50 -2.51 1.51 16 23 N -0.28 -4.07 12.49 60.35 0.75 -3.32 16 24 N -0.19 -3.13 8.51 32.74 0.28 -2.85 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.96 6.77 -51.93 -0.35 0.61 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.08 1.19 7.83 -51.93 -0.41 0.79 16 29 H 0.08 1.23 8.00 -51.93 -0.42 0.82 16 30 H 0.39 9.91 7.76 -40.82 -0.32 9.59 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.09 1.80 6.07 -51.93 -0.32 1.49 16 33 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.21 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 302.85 15.07 4.56 4.56 Total: -1.00 -31.72 302.85 -6.67 -38.38 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -3.89 Total: 6.43 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -0.87 Total: 1.88 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: 0.98 Total: -60.68 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.08 Total: -9.29 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -2.51 Total: 1.51 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.72 -6.67 -38.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989236541.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.986 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds