Wall clock time and date at job start Tue Mar 31 2020 06:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.99594 * 2 1 4 4 C 1.54337 * 109.99231 * 238.96246 * 2 1 3 5 5 C 1.55150 * 103.01883 * 218.66793 * 4 2 1 6 6 H 1.09001 * 111.00582 * 277.22811 * 5 4 2 7 7 N 1.46507 * 111.00596 * 153.38282 * 5 4 2 8 8 C 1.36930 * 120.00288 * 161.34994 * 7 5 4 9 9 H 1.08001 * 119.99871 * 359.97438 * 8 7 5 10 10 C 1.38813 * 120.00058 * 179.97438 * 8 7 5 11 11 N 1.31624 * 119.99957 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00026 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47342 * 60.00049 * 12 10 8 14 14 H 1.48507 * 109.46923 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47183 * 299.99716 * 12 10 8 16 16 C 1.54909 * 101.58616 * 35.30396 * 5 4 2 17 17 N 1.47017 * 109.88165 * 121.09621 * 2 1 3 18 18 C 1.34783 * 125.64832 * 298.39377 * 17 2 1 19 19 O 1.21606 * 119.99615 * 359.71286 * 18 17 2 20 20 C 1.47447 * 120.00199 * 179.71844 * 18 17 2 21 21 C 1.37980 * 124.15770 * 179.97438 * 20 18 17 22 22 S 1.72096 * 104.03411 * 180.02562 * 21 20 18 23 23 N 1.56407 * 96.15569 * 359.97438 * 22 21 20 24 24 N 1.27408 * 109.87501 * 0.02562 * 23 22 21 25 25 H 1.08999 * 109.47027 * 300.36459 * 1 2 3 26 26 H 1.09005 * 109.47205 * 60.35569 * 1 2 3 27 27 H 1.08998 * 109.47101 * 180.35673 * 1 2 3 28 28 H 1.09002 * 110.84971 * 100.19819 * 4 2 1 29 29 H 1.09001 * 110.66319 * 337.04916 * 4 2 1 30 30 H 0.97002 * 119.99209 * 341.34641 * 7 5 4 31 31 H 0.96997 * 119.99772 * 180.02562 * 11 10 8 32 32 H 1.08998 * 110.37050 * 204.14882 * 16 5 4 33 33 H 1.09007 * 110.45860 * 81.87521 * 16 5 4 34 34 H 1.07998 * 127.97799 * 0.03417 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 6 3.2863 -1.5183 -0.6914 6 1 4.1669 -0.8769 -0.6579 7 7 3.5476 -2.7243 -1.4813 8 6 4.7734 -3.3313 -1.4190 9 1 5.5477 -2.9209 -0.7879 10 6 5.0207 -4.4742 -2.1670 11 7 4.0768 -4.9747 -2.9357 12 14 6.6932 -5.3020 -2.0825 13 1 6.9678 -5.7216 -0.6848 14 1 6.7005 -6.4946 -2.9674 15 1 7.7406 -4.3482 -2.5279 16 6 2.8099 -1.8825 0.7369 17 7 2.0300 -0.7141 1.1839 18 6 1.8073 -0.3620 2.4657 19 8 1.1457 0.6265 2.7186 20 6 2.3660 -1.1753 3.5614 21 6 2.1924 -0.8944 4.9011 22 16 3.0475 -2.1526 5.7056 23 7 3.5251 -2.8862 4.4094 24 7 3.0984 -2.2686 3.3800 25 1 -0.3633 0.5195 0.8867 26 1 -0.3634 0.5083 -0.8932 27 1 -0.3633 -1.0276 0.0064 28 1 2.3598 -0.0450 -2.0192 29 1 1.3066 -1.4405 -1.6225 30 1 2.8521 -3.0927 -2.0483 31 1 4.2495 -5.7736 -3.4581 32 1 3.6655 -2.0412 1.3933 33 1 2.1805 -2.7722 0.7134 34 1 1.6459 -0.0743 5.3427 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989236545.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:35 Heat of formation + Delta-G solvation = 61.570788 kcal Electronic energy + Delta-G solvation = -19975.599328 eV Core-core repulsion = 16843.981461 eV Total energy + Delta-G solvation = -3131.617867 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.16435 -39.56395 -37.42950 -34.19302 -32.50337 -31.45998 -31.21517 -28.41005 -27.15405 -25.46481 -24.36532 -23.45418 -21.26387 -20.24571 -20.17857 -18.27102 -17.24028 -16.44044 -16.25813 -16.02753 -15.50529 -14.97296 -14.40974 -13.99462 -13.66955 -13.38771 -13.18364 -12.72898 -12.50594 -12.29830 -12.17896 -12.15603 -11.71106 -11.12624 -10.97267 -10.78122 -10.64472 -10.37748 -10.20062 -10.17559 -10.03763 -10.00587 -9.90849 -9.70813 -8.95983 -8.40328 -7.04133 -5.80235 -3.10507 -0.04611 0.80744 1.44693 1.44922 3.05480 3.18261 3.44725 3.49084 3.50166 3.81068 4.52300 4.60706 4.70261 4.99190 5.11322 5.22321 5.23955 5.49048 5.59951 5.76078 5.78087 5.85271 6.12100 6.18253 6.28340 6.36468 6.47808 6.54961 6.70974 6.90756 7.44141 7.65752 7.70117 8.14572 8.37460 9.49497 10.02439 10.37632 11.41891 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015079 B = 0.005643 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.412546 B = 4960.692270 C = 6590.479686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.076 0.924 4 C -0.137 4.137 5 C 0.171 3.829 6 H 0.064 0.936 7 N -0.710 5.710 8 C -0.245 4.245 9 H 0.072 0.928 10 C -0.008 4.008 11 N -0.931 5.931 12 Si 0.907 3.093 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.285 1.285 16 C 0.073 3.927 17 N -0.587 5.587 18 C 0.612 3.388 19 O -0.541 6.541 20 C -0.014 4.014 21 C -0.240 4.240 22 S 0.440 5.560 23 N -0.283 5.283 24 N -0.193 5.193 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.387 0.613 31 H 0.257 0.743 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.754 9.383 15.016 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.094 0.906 4 C -0.175 4.175 5 C 0.059 3.941 6 H 0.082 0.918 7 N -0.350 5.350 8 C -0.376 4.376 9 H 0.090 0.910 10 C -0.204 4.204 11 N -0.579 5.579 12 Si 0.738 3.262 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.053 4.053 17 N -0.319 5.319 18 C 0.395 3.605 19 O -0.419 6.419 20 C -0.162 4.162 21 C -0.398 4.398 22 S 0.576 5.424 23 N -0.264 5.264 24 N -0.064 5.064 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.222 0.778 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.875 8.280 15.632 18.349 hybrid contribution -0.148 0.410 -0.714 0.836 sum -5.022 8.690 14.918 17.980 Atomic orbital electron populations 1.22139 0.94861 1.02388 1.02555 1.21608 0.94395 0.96163 0.84251 0.90566 1.23025 0.99243 0.99688 0.95574 1.21329 0.94470 0.89480 0.88867 0.91830 1.42280 1.14273 1.27615 1.50861 1.19199 0.90166 1.06252 1.21961 0.91009 1.24741 0.97904 0.98393 0.99412 1.69649 1.32501 1.24137 1.31614 0.86267 0.83669 0.78855 0.77406 1.21089 1.21673 1.21194 1.23815 0.95575 0.86504 0.99377 1.48490 1.50647 1.28870 1.03860 1.16289 0.80352 0.83327 0.80540 1.90782 1.41062 1.26757 1.83286 1.22727 1.02543 0.96244 0.94652 1.28810 1.06690 1.07696 0.96576 1.81462 1.31869 1.08980 1.20072 1.78856 1.23650 1.25204 0.98656 1.71849 1.08786 1.05295 1.20439 0.91574 0.91590 0.92396 0.90118 0.90229 0.77846 0.93357 0.89004 0.91071 0.77670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.11 37.16 0.34 -1.82 16 2 C 0.14 2.06 3.46 -66.95 -0.23 1.83 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.14 -2.14 6.11 -24.89 -0.15 -2.30 16 5 C 0.17 3.31 3.69 -65.78 -0.24 3.07 16 6 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 7 N -0.71 -17.21 5.28 -51.35 -0.27 -17.48 16 8 C -0.24 -6.65 9.98 -15.06 -0.15 -6.80 16 9 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 10 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 11 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 12 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 C 0.07 1.35 5.77 -2.53 -0.01 1.34 16 17 N -0.59 -9.71 3.06 -164.26 -0.50 -10.22 16 18 C 0.61 10.04 7.63 -12.51 -0.10 9.94 16 19 O -0.54 -9.41 15.84 5.27 0.08 -9.33 16 20 C -0.01 -0.21 6.76 -83.78 -0.57 -0.78 16 21 C -0.24 -2.55 11.21 30.64 0.34 -2.20 16 22 S 0.44 4.06 23.38 -107.50 -2.51 1.54 16 23 N -0.28 -4.10 12.49 60.35 0.75 -3.35 16 24 N -0.19 -3.15 8.51 32.74 0.28 -2.87 16 25 H 0.07 0.94 6.89 -51.93 -0.36 0.59 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.08 1.27 7.70 -51.93 -0.40 0.87 16 30 H 0.39 9.90 7.71 -40.82 -0.31 9.59 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.09 1.81 6.08 -51.93 -0.32 1.49 16 33 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 34 H 0.21 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 303.12 15.07 4.57 4.57 Total: -1.00 -31.75 303.12 -6.66 -38.41 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -3.89 Total: 6.43 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -0.87 Total: 1.94 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: 0.98 Total: -60.81 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.08 Total: -9.33 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -2.51 Total: 1.54 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.75 -6.66 -38.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989236545.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.980 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds