Wall clock time and date at job start Tue Mar 31 2020 06:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.87808 * 2 1 4 4 C 1.54326 * 109.88447 * 121.01749 * 2 1 3 5 5 C 1.55156 * 102.94248 * 97.37536 * 4 2 1 6 6 H 1.09002 * 111.00598 * 277.38987 * 5 4 2 7 7 N 1.46501 * 111.00188 * 153.57879 * 5 4 2 8 8 C 1.36935 * 119.99801 * 155.00279 * 7 5 4 9 9 H 1.08003 * 120.00239 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99745 * 180.02562 * 8 7 5 11 11 N 1.31620 * 120.00372 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99955 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46845 * 269.99982 * 12 10 8 14 14 H 1.48503 * 109.47399 * 29.99472 * 12 10 8 15 15 H 1.48498 * 109.47295 * 150.00079 * 12 10 8 16 16 C 1.54909 * 101.58240 * 35.50658 * 5 4 2 17 17 N 1.47025 * 110.01062 * 238.90117 * 2 1 3 18 18 C 1.34769 * 125.64644 * 59.49902 * 17 2 1 19 19 O 1.21609 * 120.00464 * 359.97438 * 18 17 2 20 20 C 1.47449 * 119.99976 * 180.02562 * 18 17 2 21 21 C 1.37982 * 124.15743 * 179.97438 * 20 18 17 22 22 S 1.72103 * 104.03780 * 179.97438 * 21 20 18 23 23 N 1.56411 * 96.15197 * 359.97438 * 22 21 20 24 24 N 1.27419 * 109.87526 * 359.72634 * 23 22 21 25 25 H 1.09000 * 109.46819 * 298.98683 * 1 2 3 26 26 H 1.09001 * 109.46660 * 58.98402 * 1 2 3 27 27 H 1.08997 * 109.47251 * 178.98267 * 1 2 3 28 28 H 1.09002 * 110.71627 * 339.01643 * 4 2 1 29 29 H 1.08997 * 110.71838 * 215.74361 * 4 2 1 30 30 H 0.97000 * 119.99781 * 335.00060 * 7 5 4 31 31 H 0.97000 * 119.99954 * 359.97438 * 11 10 8 32 32 H 1.08996 * 110.37115 * 81.82492 * 16 5 4 33 33 H 1.08998 * 110.37100 * 204.15526 * 16 5 4 34 34 H 1.08005 * 127.98072 * 0.03945 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9007 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 6 2.3556 -2.1674 0.6945 6 1 1.4504 -2.7738 0.6622 7 7 3.3979 -2.8265 1.4854 8 6 3.4639 -4.1936 1.5272 9 1 2.7474 -4.7860 0.9775 10 6 4.4511 -4.8181 2.2771 11 7 5.3240 -4.0963 2.9475 12 14 4.5416 -6.6831 2.3337 13 1 3.7157 -7.1847 3.4613 14 1 4.0287 -7.2426 1.0573 15 1 5.9523 -7.1046 2.5275 16 6 2.8618 -1.8473 -0.7342 17 7 2.0331 -0.7136 -1.1829 18 6 1.7796 -0.3850 -2.4651 19 8 1.0793 0.5761 -2.7196 20 6 2.3504 -1.1915 -3.5596 21 6 2.1467 -0.9335 -4.8997 22 16 3.0341 -2.1705 -5.7025 23 7 3.5582 -2.8697 -4.4053 24 7 3.1299 -2.2515 -3.3767 25 1 -0.3633 0.4980 0.8989 26 1 -0.3633 0.5295 -0.8808 27 1 -0.3633 -1.0275 -0.0182 28 1 1.2909 -0.7886 2.0201 29 1 2.9642 -0.2793 1.6202 30 1 4.0412 -2.2945 1.9794 31 1 5.2777 -3.1279 2.9172 32 1 3.9134 -1.5619 -0.7091 33 1 2.7164 -2.7061 -1.3895 34 1 1.5655 -0.1382 -5.3426 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989236547.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:38 Heat of formation + Delta-G solvation = 61.970994 kcal Electronic energy + Delta-G solvation = -20017.805449 eV Core-core repulsion = 16886.204936 eV Total energy + Delta-G solvation = -3131.600513 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.20949 -39.64325 -37.52506 -34.48932 -32.56294 -31.52457 -31.20611 -28.13446 -27.19426 -25.53738 -24.35650 -23.38295 -21.50473 -20.45037 -20.07912 -18.32840 -17.51864 -16.45020 -16.27045 -16.13872 -15.29326 -15.15643 -14.45508 -14.24304 -13.66659 -13.49825 -13.25245 -13.01475 -12.60834 -12.39679 -12.25781 -12.02286 -11.88457 -11.04533 -10.99709 -10.71339 -10.57585 -10.31162 -10.21556 -10.19254 -10.05916 -10.00979 -9.98714 -9.20978 -8.98121 -8.47612 -7.12155 -6.13926 -3.15711 -0.08273 0.77156 1.39836 1.41655 2.99305 3.13232 3.52148 3.56939 3.70831 3.76349 4.50485 4.61048 4.69127 4.92983 5.08573 5.13678 5.20260 5.40626 5.57601 5.62152 5.79610 5.83560 5.97113 6.11900 6.18151 6.24331 6.38331 6.51086 6.63819 6.80154 7.39827 7.59808 7.78835 8.09213 8.71781 9.15396 10.01989 10.14959 11.34067 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015452 B = 0.005527 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.650967 B = 5065.276131 C = 6587.773310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.074 0.926 4 C -0.140 4.140 5 C 0.178 3.822 6 H 0.068 0.932 7 N -0.721 5.721 8 C -0.336 4.336 9 H 0.067 0.933 10 C -0.040 4.040 11 N -0.941 5.941 12 Si 1.082 2.918 13 H -0.295 1.295 14 H -0.294 1.294 15 H -0.287 1.287 16 C 0.073 3.927 17 N -0.588 5.588 18 C 0.612 3.388 19 O -0.540 6.540 20 C -0.015 4.015 21 C -0.240 4.240 22 S 0.443 5.557 23 N -0.284 5.284 24 N -0.195 5.195 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.370 0.630 31 H 0.255 0.745 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.811 7.953 -15.576 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.092 0.908 4 C -0.179 4.179 5 C 0.065 3.935 6 H 0.086 0.914 7 N -0.362 5.362 8 C -0.467 4.467 9 H 0.085 0.915 10 C -0.238 4.238 11 N -0.586 5.586 12 Si 0.912 3.088 13 H -0.223 1.223 14 H -0.220 1.220 15 H -0.213 1.213 16 C -0.053 4.053 17 N -0.319 5.319 18 C 0.396 3.604 19 O -0.417 6.417 20 C -0.162 4.162 21 C -0.398 4.398 22 S 0.579 5.421 23 N -0.264 5.264 24 N -0.065 5.065 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.204 0.796 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -6.382 5.486 -15.663 17.781 hybrid contribution -1.401 2.633 0.027 2.983 sum -7.783 8.119 -15.636 19.260 Atomic orbital electron populations 1.22144 0.94662 1.02531 1.02631 1.21583 0.94626 0.95954 0.84226 0.90789 1.23074 1.01712 0.97368 0.95759 1.21253 0.92695 0.90937 0.88572 0.91360 1.42305 1.33780 1.04280 1.55842 1.20083 1.14892 0.82555 1.29135 0.91495 1.25775 0.94363 1.06872 0.96780 1.70862 1.37482 1.06410 1.43870 0.83214 0.76066 0.74067 0.75418 1.22264 1.22024 1.21339 1.23784 0.94423 0.87639 0.99424 1.48457 1.48771 1.30801 1.03884 1.16287 0.80521 0.83125 0.80500 1.90783 1.39395 1.28328 1.83221 1.22713 1.01851 0.97042 0.94639 1.28819 1.06793 1.07582 0.96563 1.81468 1.29771 1.10891 1.19966 1.78849 1.23675 1.25171 0.98680 1.71849 1.08822 1.05284 1.20540 0.91612 0.91373 0.92295 0.89937 0.90665 0.79624 0.93326 0.91280 0.88889 0.77638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.06 37.16 0.34 -1.83 16 2 C 0.14 2.07 3.49 -66.95 -0.23 1.84 16 3 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 4 C -0.14 -2.22 6.14 -24.90 -0.15 -2.37 16 5 C 0.18 3.48 3.71 -65.78 -0.24 3.24 16 6 H 0.07 1.38 8.09 -51.93 -0.42 0.96 16 7 N -0.72 -17.51 5.24 -51.35 -0.27 -17.78 16 8 C -0.34 -9.26 9.96 -15.06 -0.15 -9.41 16 9 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 10 C -0.04 -1.15 5.50 -17.43 -0.10 -1.24 16 11 N -0.94 -28.70 13.70 55.49 0.76 -27.94 16 12 Si 1.08 25.88 29.92 -169.99 -5.09 20.79 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 C 0.07 1.36 5.76 -2.53 -0.01 1.34 16 17 N -0.59 -9.74 3.08 -164.26 -0.51 -10.24 16 18 C 0.61 10.04 7.63 -12.51 -0.10 9.94 16 19 O -0.54 -9.36 15.71 5.27 0.08 -9.27 16 20 C -0.02 -0.22 6.76 -83.78 -0.57 -0.79 16 21 C -0.24 -2.53 11.21 30.64 0.34 -2.19 16 22 S 0.44 4.04 23.38 -107.50 -2.51 1.53 16 23 N -0.28 -4.08 12.49 60.35 0.75 -3.33 16 24 N -0.19 -3.16 8.52 32.74 0.28 -2.89 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.97 6.77 -51.93 -0.35 0.62 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 1.21 7.83 -51.93 -0.41 0.80 16 29 H 0.07 1.19 8.00 -51.93 -0.42 0.77 16 30 H 0.37 9.21 6.60 -40.82 -0.27 8.94 16 31 H 0.26 7.63 6.77 -40.82 -0.28 7.36 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 33 H 0.09 1.85 6.08 -51.93 -0.32 1.53 16 34 H 0.21 1.61 8.06 -52.48 -0.42 1.18 16 LS Contribution 301.17 15.07 4.54 4.54 Total: -1.00 -32.82 301.17 -6.61 -39.43 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -3.78 Total: 6.62 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -0.87 Total: -1.46 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: 1.02 Total: -62.18 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -5.09 Total: 20.79 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -2.51 Total: 1.53 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.82 -6.61 -39.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989236547.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.400 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds