Wall clock time and date at job start Tue Mar 31 2020 06:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34773 * 119.99767 * 2 1 4 4 O 1.21631 * 120.00007 * 184.76179 * 3 2 1 5 5 C 1.47170 * 120.00445 * 4.76367 * 3 2 1 6 6 C 1.38245 * 128.47955 * 184.50223 * 5 3 2 7 7 N 1.31245 * 111.89155 * 179.80807 * 6 5 3 8 8 N 1.27336 * 120.03212 * 0.53175 * 7 6 5 9 9 S 1.56636 * 109.74457 * 359.69338 * 8 7 6 10 10 C 1.46494 * 120.00144 * 179.97438 * 2 1 3 11 11 C 1.53782 * 113.69186 * 21.27196 * 10 2 1 12 12 C 1.53777 * 87.08145 * 89.12522 * 11 10 2 13 13 N 1.46504 * 113.61695 * 270.88639 * 12 11 10 14 14 C 1.36938 * 119.99955 * 185.33843 * 13 12 11 15 15 H 1.08002 * 119.99884 * 4.57224 * 14 13 12 16 16 C 1.38808 * 119.99631 * 184.56694 * 14 13 12 17 17 N 1.31621 * 119.99951 * 174.32769 * 16 14 13 18 18 Si 1.86797 * 120.00347 * 354.33214 * 16 14 13 19 19 H 1.48498 * 109.47425 * 94.52700 * 18 16 14 20 20 H 1.48496 * 109.47222 * 214.52783 * 18 16 14 21 21 H 1.48504 * 109.47063 * 334.52852 * 18 16 14 22 22 C 1.53781 * 87.08250 * 25.43422 * 12 11 10 23 23 H 1.08996 * 109.47297 * 182.96578 * 1 2 3 24 24 H 1.08996 * 109.47519 * 302.96951 * 1 2 3 25 25 H 1.09003 * 109.46589 * 62.97226 * 1 2 3 26 26 H 1.08001 * 124.05260 * 359.97388 * 6 5 3 27 27 H 1.09008 * 112.85396 * 250.00574 * 10 2 1 28 28 H 1.08999 * 113.61861 * 203.67858 * 11 10 2 29 29 H 1.08999 * 113.61247 * 334.57666 * 11 10 2 30 30 H 1.09005 * 113.69157 * 139.99335 * 12 11 10 31 31 H 0.96995 * 119.99369 * 5.33908 * 13 12 11 32 32 H 0.96996 * 120.00078 * 180.02562 * 17 16 14 33 33 H 1.08998 * 113.61652 * 220.01842 * 22 12 11 34 34 H 1.09004 * 113.61285 * 89.11034 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3520 1.1691 -0.0874 5 6 1.4068 2.4396 0.1058 6 6 1.9056 3.7271 0.0382 7 7 0.9586 4.6263 0.1695 8 7 -0.2481 4.2599 0.3457 9 16 -0.3296 2.6957 0.3588 10 6 2.1975 -1.2687 0.0006 11 6 1.3700 -2.4602 -0.5098 12 6 1.8763 -2.1074 -1.9183 13 7 1.0242 -1.1477 -2.6250 14 6 1.2916 -0.8250 -3.9286 15 1 2.0844 -1.3319 -4.4587 16 6 0.5437 0.1536 -4.5688 17 7 0.8708 0.5430 -5.7828 18 14 -0.9271 0.9179 -3.7074 19 1 -0.5074 2.1700 -3.0281 20 1 -1.9809 1.2264 -4.7070 21 1 -1.4622 -0.0351 -2.7020 22 6 3.0935 -1.4632 -1.2340 23 1 -0.3634 -1.0262 0.0532 24 1 -0.3634 0.5592 0.8621 25 1 -0.3632 0.4670 -0.9155 26 1 2.9490 3.9646 -0.1079 27 1 2.7066 -1.4631 0.9446 28 1 1.7244 -3.4251 -0.1474 29 1 0.2949 -2.3297 -0.3868 30 1 2.1263 -2.9780 -2.5247 31 1 0.2708 -0.7409 -2.1693 32 1 0.3484 1.2270 -6.2299 33 1 3.4097 -0.5279 -1.6958 34 1 3.9191 -2.1557 -1.0696 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998499411.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:58 Heat of formation + Delta-G solvation = 105.136696 kcal Electronic energy + Delta-G solvation = -20872.262949 eV Core-core repulsion = 17742.534242 eV Total energy + Delta-G solvation = -3129.728707 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.83487 -40.34184 -37.94358 -34.72582 -33.37520 -31.90793 -30.63760 -27.88404 -27.39404 -25.16864 -24.67134 -23.39250 -21.88595 -20.04521 -19.34723 -18.32317 -17.75051 -16.97918 -16.58174 -16.05909 -15.44658 -15.20168 -14.73043 -14.38612 -14.10936 -13.98097 -13.38634 -12.97204 -12.63610 -12.57143 -12.07478 -12.00270 -11.82988 -11.66008 -11.14365 -10.92902 -10.46130 -10.38424 -10.20837 -10.06067 -9.93250 -9.79921 -9.77964 -9.67741 -9.00886 -8.53358 -7.36164 -5.88074 -3.23008 -0.24669 0.78653 1.49593 2.00582 2.76610 3.08938 3.10829 3.16344 3.29294 4.00019 4.31979 4.43260 4.71643 4.76699 4.79502 4.95063 5.03801 5.12470 5.34086 5.36374 5.57845 5.61601 5.64793 5.87760 5.94313 6.12435 6.37969 6.58787 6.64999 6.99640 7.22329 7.64993 7.91213 8.06811 8.31891 9.09277 9.80889 9.99856 11.30443 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.014542 B = 0.009430 C = 0.007026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.983775 B = 2968.539627 C = 3984.021178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.577 5.577 3 C 0.607 3.393 4 O -0.508 6.508 5 C -0.276 4.276 6 C 0.070 3.930 7 N -0.252 5.252 8 N -0.279 5.279 9 S 0.420 5.580 10 C 0.128 3.872 11 C -0.162 4.162 12 C 0.168 3.832 13 N -0.733 5.733 14 C -0.241 4.241 15 H 0.094 0.906 16 C 0.009 3.991 17 N -0.927 5.927 18 Si 0.862 3.138 19 H -0.285 1.285 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.173 4.173 23 H 0.109 0.891 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.216 0.784 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.359 0.641 32 H 0.260 0.740 33 H 0.087 0.913 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.155 -2.362 16.318 16.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.310 5.310 3 C 0.392 3.608 4 O -0.384 6.384 5 C -0.417 4.417 6 C -0.096 4.096 7 N -0.116 5.116 8 N -0.259 5.259 9 S 0.557 5.443 10 C 0.025 3.975 11 C -0.200 4.200 12 C 0.057 3.943 13 N -0.376 5.376 14 C -0.371 4.371 15 H 0.111 0.889 16 C -0.187 4.187 17 N -0.574 5.574 18 Si 0.692 3.308 19 H -0.212 1.212 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.214 4.214 23 H 0.127 0.873 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.232 0.768 27 H 0.099 0.901 28 H 0.119 0.881 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.194 0.806 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.221 -1.539 16.268 16.655 hybrid contribution 0.222 0.478 0.131 0.543 sum -2.999 -1.061 16.399 16.705 Atomic orbital electron populations 1.22349 0.80621 1.05284 1.01522 1.47127 1.06127 1.05369 1.72415 1.16301 0.86294 0.80946 0.77301 1.90827 1.12369 1.86146 1.49040 1.28070 0.98597 1.00043 1.14973 1.24433 1.02069 0.85885 0.97256 1.70763 0.93932 1.32075 1.14851 1.78651 1.15858 1.11959 1.19445 1.82889 1.05865 1.05662 1.49934 1.21930 0.94685 0.81861 0.99002 1.23793 1.00006 0.97344 0.98871 1.21153 0.90623 0.92491 0.89999 1.42591 1.32213 1.51079 1.11723 1.19050 1.15415 1.16180 0.86419 0.88871 1.24620 0.99236 0.98459 0.96384 1.69678 1.41034 1.33351 1.13334 0.86917 0.84852 0.79404 0.79602 1.21205 1.21078 1.19885 1.24007 0.98126 1.03272 0.96031 0.87321 0.91665 0.91444 0.76765 0.90073 0.88105 0.90675 0.91900 0.80607 0.92935 0.89449 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.62 6.94 59.85 0.42 1.03 16 2 N -0.58 -8.87 2.58 -174.37 -0.45 -9.32 16 3 C 0.61 10.45 7.41 -12.64 -0.09 10.36 16 4 O -0.51 -9.93 15.56 5.25 0.08 -9.85 16 5 C -0.28 -4.36 6.58 -35.95 -0.24 -4.60 16 6 C 0.07 1.06 11.55 -17.80 -0.21 0.86 16 7 N -0.25 -4.10 11.54 30.36 0.35 -3.75 16 8 N -0.28 -4.45 12.51 60.35 0.75 -3.69 16 9 S 0.42 5.82 18.88 -107.50 -2.03 3.79 16 10 C 0.13 1.82 4.20 -67.12 -0.28 1.54 16 11 C -0.16 -2.06 7.13 -25.92 -0.18 -2.25 16 12 C 0.17 2.98 4.53 -67.12 -0.30 2.67 16 13 N -0.73 -16.26 4.75 -52.63 -0.25 -16.51 16 14 C -0.24 -6.60 10.47 -15.06 -0.16 -6.75 16 15 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 16 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 17 N -0.93 -28.82 13.97 55.49 0.78 -28.05 16 18 Si 0.86 21.01 26.36 -169.99 -4.48 16.53 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.27 -5.83 6.04 56.52 0.34 -5.49 16 22 C -0.17 -2.93 7.14 -25.92 -0.19 -3.12 16 23 H 0.11 1.18 5.19 -51.93 -0.27 0.91 16 24 H 0.07 0.66 5.73 -36.07 -0.21 0.45 16 25 H 0.07 1.07 4.20 -51.93 -0.22 0.85 16 26 H 0.22 2.73 8.06 -52.49 -0.42 2.30 16 27 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 28 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.07 0.90 5.44 -51.93 -0.28 0.62 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.36 7.56 2.68 -40.82 -0.11 7.45 16 32 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 33 H 0.09 1.86 6.86 -51.93 -0.36 1.50 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 284.96 15.07 4.29 4.29 Total: -1.00 -33.47 284.96 -5.46 -38.93 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -3.17 Total: 7.72 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -1.33 Total: -0.09 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: 1.18 Total: -61.32 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.48 Total: 16.53 kcal Atomic # 16 Polarization: 5.82 SS G_CDS: -2.03 Total: 3.79 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.47 -5.46 -38.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998499411.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.065 kcal (2) G-P(sol) polarization free energy of solvation -33.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds