Wall clock time and date at job start Tue Mar 31 2020 05:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31237 * 124.05807 * 2 1 4 4 N 1.27329 * 120.04064 * 180.02562 * 3 2 1 5 5 S 1.56641 * 109.74069 * 359.69388 * 4 3 2 6 6 C 1.38241 * 124.05170 * 180.02562 * 2 1 3 7 7 C 1.47171 * 128.47886 * 359.97438 * 6 2 1 8 8 O 1.21621 * 119.99784 * 0.02562 * 7 6 2 9 9 N 1.34776 * 120.00128 * 179.97438 * 7 6 2 10 10 C 1.46495 * 119.99803 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.78470 * 36.79251 * 10 9 7 12 12 C 1.55405 * 110.85076 * 160.08868 * 10 9 7 13 13 C 1.54914 * 101.66697 * 153.69955 * 12 10 9 14 14 N 1.47426 * 104.82992 * 323.07703 * 13 12 10 15 15 C 1.36936 * 125.64483 * 204.16378 * 14 13 12 16 16 H 1.08004 * 119.99836 * 179.97438 * 15 14 13 17 17 C 1.38815 * 120.00358 * 359.95842 * 15 14 13 18 18 N 1.31619 * 119.99732 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00198 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46852 * 89.99788 * 19 17 15 21 21 H 1.48497 * 109.47226 * 209.99639 * 19 17 15 22 22 H 1.48500 * 109.46864 * 330.00142 * 19 17 15 23 23 C 1.47018 * 108.70517 * 24.12623 * 14 13 12 24 24 H 1.09003 * 109.47352 * 269.97778 * 1 2 3 25 25 H 1.09005 * 109.47325 * 29.96958 * 1 2 3 26 26 H 1.08997 * 109.47678 * 149.97276 * 1 2 3 27 27 H 0.96997 * 119.99763 * 0.02562 * 9 7 6 28 28 H 1.09000 * 110.89538 * 35.62760 * 12 10 9 29 29 H 1.09001 * 111.03900 * 271.83245 * 12 10 9 30 30 H 1.08999 * 110.37121 * 204.23438 * 13 12 10 31 31 H 1.09001 * 110.45739 * 81.96050 * 13 12 10 32 32 H 0.96996 * 119.99954 * 180.02562 * 18 17 15 33 33 H 1.09002 * 109.88241 * 118.36067 * 23 14 13 34 34 H 1.09000 * 109.88049 * 239.37196 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5121 0.9981 -0.0005 5 16 3.9366 -0.5097 0.0068 6 6 2.2811 -1.1454 -0.0005 7 6 1.8393 -2.5492 -0.0006 8 8 0.6520 -2.8130 -0.0007 9 7 2.7503 -3.5424 -0.0017 10 6 2.3104 -4.9398 -0.0012 11 1 1.4152 -5.0637 -0.6106 12 6 3.4463 -5.8774 -0.4971 13 6 3.0787 -7.2108 0.2004 14 7 2.5607 -6.8147 1.5227 15 6 2.5464 -7.6023 2.6428 16 1 2.1437 -7.2177 3.5682 17 6 3.0490 -8.8951 2.5888 18 7 3.5399 -9.3638 1.4610 19 14 3.0301 -9.9693 4.1170 20 1 1.7571 -10.7322 4.1700 21 1 4.1731 -10.9162 4.0706 22 1 3.1449 -9.1133 5.3250 23 6 2.0629 -5.4339 1.4397 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3634 0.8903 -0.5134 26 1 -0.3634 -0.8897 -0.5142 27 1 3.6972 -3.3319 -0.0020 28 1 4.4201 -5.5179 -0.1646 29 1 3.4204 -5.9837 -1.5816 30 1 3.9637 -7.8373 0.3118 31 1 2.3106 -7.7378 -0.3656 32 1 3.8908 -10.2672 1.4232 33 1 0.9960 -5.4105 1.6615 34 1 2.6021 -4.8024 2.1458 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010126033.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:46 Heat of formation + Delta-G solvation = 65.526681 kcal Electronic energy + Delta-G solvation = -19490.316336 eV Core-core repulsion = 16358.870010 eV Total energy + Delta-G solvation = -3131.446326 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.18439 -39.68393 -37.32634 -34.26159 -33.48060 -32.02805 -29.50129 -28.69899 -27.23236 -26.89062 -24.62672 -22.76469 -20.82659 -20.38114 -19.92597 -18.68443 -17.65742 -16.82555 -16.34404 -16.09927 -15.04173 -14.71918 -14.51627 -14.25531 -14.07315 -13.29117 -13.19904 -13.19560 -12.66331 -12.47870 -12.06575 -11.77042 -11.70950 -11.24157 -11.02294 -10.84502 -10.64178 -10.54707 -10.16735 -10.07827 -10.06087 -9.93696 -9.91095 -9.64833 -8.99996 -8.71203 -6.90770 -5.71648 -3.13390 -0.49917 0.57209 1.22217 1.71428 2.86255 2.94246 3.37577 3.42862 3.44417 3.65152 4.33806 4.43308 4.57341 5.06476 5.19104 5.35688 5.39404 5.44119 5.51017 5.67054 5.69167 5.92651 6.05185 6.24609 6.36378 6.38773 6.64506 6.83096 7.31319 7.39602 7.44034 7.56803 7.76328 8.00003 8.28322 9.15774 9.76178 10.39339 11.32684 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.032639 B = 0.003635 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.673363 B = 7701.111760 C = 7823.308976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.099 3.901 3 N -0.251 5.251 4 N -0.256 5.256 5 S 0.414 5.586 6 C -0.286 4.286 7 C 0.599 3.401 8 O -0.512 6.512 9 N -0.705 5.705 10 C 0.131 3.869 11 H 0.097 0.903 12 C -0.149 4.149 13 C 0.153 3.847 14 N -0.603 5.603 15 C -0.223 4.223 16 H 0.078 0.922 17 C -0.010 4.010 18 N -0.923 5.923 19 Si 0.916 3.084 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.128 3.872 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.397 0.603 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.017 0.983 32 H 0.253 0.747 33 H 0.030 0.970 34 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.577 16.021 -5.798 17.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 N -0.118 5.118 4 N -0.237 5.237 5 S 0.550 5.450 6 C -0.427 4.427 7 C 0.382 3.618 8 O -0.388 6.388 9 N -0.356 5.356 10 C 0.027 3.973 11 H 0.115 0.885 12 C -0.189 4.189 13 C 0.028 3.972 14 N -0.330 5.330 15 C -0.351 4.351 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.572 5.572 19 Si 0.746 3.254 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.207 1.207 23 C 0.001 3.999 24 H 0.108 0.892 25 H 0.100 0.900 26 H 0.121 0.879 27 H 0.232 0.768 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.130 0.870 31 H 0.035 0.965 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.416 16.729 -5.719 17.737 hybrid contribution -0.796 -0.963 0.814 1.491 sum 0.620 15.767 -4.905 16.524 Atomic orbital electron populations 1.20543 0.83683 1.04996 1.04503 1.22969 1.00273 0.85013 0.96526 1.70613 0.96944 1.28041 1.16181 1.78863 1.09465 1.15705 1.19622 1.82589 1.09985 1.01460 1.50917 1.27876 0.97948 1.00268 1.16638 1.16457 0.86214 0.81810 0.77349 1.90824 1.15697 1.82877 1.49443 1.45984 1.08959 1.06619 1.73995 1.22273 0.99052 0.77308 0.98661 0.88505 1.23402 0.96792 0.98683 0.99987 1.21959 1.00626 0.90855 0.83791 1.44437 1.71163 1.09316 1.08052 1.19086 1.34052 0.93760 0.88206 0.90429 1.24780 1.01159 0.97123 0.97472 1.69753 1.46686 1.16615 1.24146 0.86053 0.77247 0.80230 0.81846 1.21554 1.21607 1.20683 1.21593 0.97360 0.87967 0.92951 0.89232 0.89952 0.87901 0.76822 0.91510 0.91446 0.87050 0.96473 0.93637 0.95246 0.95669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 9.90 36.00 0.36 -0.40 16 2 C 0.10 1.17 7.00 -82.85 -0.58 0.59 16 3 N -0.25 -3.18 11.54 33.42 0.39 -2.80 16 4 N -0.26 -3.07 12.51 60.35 0.75 -2.32 16 5 S 0.41 3.93 23.05 -107.50 -2.48 1.45 16 6 C -0.29 -3.38 6.81 -35.96 -0.24 -3.63 16 7 C 0.60 8.34 7.80 -12.63 -0.10 8.24 16 8 O -0.51 -8.53 14.62 5.26 0.08 -8.46 16 9 N -0.71 -9.43 5.13 -53.06 -0.27 -9.70 16 10 C 0.13 2.18 3.24 -65.96 -0.21 1.97 16 11 H 0.10 1.68 7.70 -51.93 -0.40 1.28 16 12 C -0.15 -2.51 6.71 -24.44 -0.16 -2.67 16 13 C 0.15 3.49 5.89 -2.53 -0.01 3.48 16 14 N -0.60 -15.01 3.39 -170.07 -0.58 -15.59 16 15 C -0.22 -6.10 10.27 -15.06 -0.15 -6.26 16 16 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 17 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 18 N -0.92 -26.07 10.09 55.49 0.56 -25.51 16 19 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.13 2.66 6.98 -3.07 -0.02 2.64 16 24 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.10 1.10 6.47 -51.93 -0.34 0.77 16 27 H 0.40 4.26 7.95 -40.82 -0.32 3.94 16 28 H 0.07 1.04 8.01 -51.93 -0.42 0.63 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.11 2.86 5.87 -51.93 -0.30 2.55 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.03 0.52 8.03 -51.93 -0.42 0.10 16 LS Contribution 302.17 15.07 4.55 4.55 Total: -1.00 -31.12 302.17 -7.11 -38.23 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -3.86 Total: -0.09 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -1.23 Total: 3.59 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.85 Total: -55.91 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.08 Total: -8.46 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -2.48 Total: 1.45 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.12 -7.11 -38.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010126033.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.754 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds