Wall clock time and date at job start Tue Mar 31 2020 05:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31241 * 124.05395 * 2 1 4 4 N 1.27336 * 120.03917 * 180.34194 * 3 2 1 5 5 S 1.56638 * 109.73793 * 359.71587 * 4 3 2 6 6 C 1.38243 * 124.05901 * 179.83446 * 2 1 3 7 7 C 1.47173 * 128.47166 * 359.97438 * 6 2 1 8 8 O 1.21621 * 120.00206 * 359.70419 * 7 6 2 9 9 N 1.34776 * 119.99805 * 179.70288 * 7 6 2 10 10 C 1.47022 * 125.64758 * 359.97438 * 9 7 6 11 11 C 1.54327 * 107.27336 * 178.97550 * 10 9 7 12 12 C 1.55165 * 102.94078 * 337.80587 * 11 10 9 13 13 H 1.09001 * 111.00003 * 277.43047 * 12 11 10 14 14 N 1.46496 * 111.00397 * 153.57581 * 12 11 10 15 15 C 1.36935 * 120.00087 * 155.00449 * 14 12 11 16 16 H 1.08005 * 119.99923 * 359.97438 * 15 14 12 17 17 C 1.38812 * 120.00226 * 180.02562 * 15 14 12 18 18 N 1.31619 * 119.99905 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00010 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47208 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47531 * 119.99749 * 19 17 15 22 22 H 1.48501 * 109.46923 * 239.99683 * 19 17 15 23 23 C 1.47425 * 125.64906 * 180.02562 * 9 7 6 24 24 H 1.09008 * 109.46894 * 270.16793 * 1 2 3 25 25 H 1.08997 * 109.47740 * 30.16979 * 1 2 3 26 26 H 1.09002 * 109.46883 * 150.17291 * 1 2 3 27 27 H 1.08997 * 109.88723 * 59.55959 * 10 9 7 28 28 H 1.09000 * 110.01436 * 298.46511 * 10 9 7 29 29 H 1.08993 * 110.72079 * 96.16743 * 11 10 9 30 30 H 1.09002 * 110.72173 * 219.44580 * 11 10 9 31 31 H 0.97002 * 120.00223 * 334.99627 * 14 12 11 32 32 H 0.97000 * 119.99990 * 180.02562 * 18 17 15 33 33 H 1.08997 * 110.36855 * 322.93198 * 23 9 7 34 34 H 1.08999 * 110.36490 * 85.14513 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5121 0.9982 -0.0066 5 16 3.9366 -0.5096 -0.0064 6 6 2.2812 -1.1453 0.0033 7 6 1.8394 -2.5491 0.0079 8 8 0.6522 -2.8130 0.0146 9 7 2.7505 -3.5423 0.0046 10 6 4.2101 -3.3661 -0.0040 11 6 4.8418 -4.7739 0.0215 12 6 3.7085 -5.6526 0.6141 13 1 3.6969 -5.5934 1.7024 14 7 3.8332 -7.0421 0.1670 15 6 3.3027 -8.0543 0.9214 16 1 2.7926 -7.8283 1.8462 17 6 3.4213 -9.3710 0.4981 18 7 4.0432 -9.6465 -0.6287 19 14 2.6981 -10.7518 1.5276 20 1 2.0560 -10.1818 2.7392 21 1 1.6845 -11.4863 0.7287 22 1 3.7796 -11.6850 1.9336 23 6 2.4485 -4.9853 0.0080 24 1 -0.3633 0.0030 1.0278 25 1 -0.3634 0.8884 -0.5164 26 1 -0.3633 -0.8916 -0.5112 27 1 4.5209 -2.8044 0.8769 28 1 4.5168 -2.8384 -0.9071 29 1 5.0960 -5.1008 -0.9867 30 1 5.7202 -4.7909 0.6666 31 1 4.2915 -7.2452 -0.6635 32 1 4.1258 -10.5665 -0.9247 33 1 1.5759 -5.1888 0.6285 34 1 2.2811 -5.3402 -1.0090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018493403.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:32 Heat of formation + Delta-G solvation = 55.302996 kcal Electronic energy + Delta-G solvation = -19515.385925 eV Core-core repulsion = 16383.496267 eV Total energy + Delta-G solvation = -3131.889659 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.10579 -39.85019 -37.46322 -34.32277 -33.43452 -31.78722 -29.87539 -29.06040 -27.37213 -27.08236 -24.33356 -22.96833 -22.07185 -20.31056 -19.33784 -18.72687 -17.60908 -16.97436 -16.49676 -15.93515 -15.62670 -14.58814 -14.46548 -14.19882 -13.69014 -13.46573 -13.19836 -13.17173 -13.06063 -12.68507 -12.51569 -12.40832 -11.81449 -11.69314 -11.25700 -10.96493 -10.85053 -10.48911 -10.31847 -10.15550 -10.06740 -9.96814 -9.90234 -9.82789 -9.12387 -8.61596 -7.18642 -5.92359 -3.23841 -0.43788 0.62985 1.30450 1.76397 2.81525 2.89898 3.36129 3.42917 3.44449 3.70085 4.28713 4.40623 4.46426 4.70789 4.97337 5.07670 5.13267 5.32189 5.41060 5.51342 5.54654 5.60273 5.76880 5.96102 5.98390 6.09483 6.18611 6.29128 6.43923 6.71704 7.38706 7.48939 7.58483 7.96877 8.24753 9.37296 9.88453 10.23186 11.29455 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.035663 B = 0.003756 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.944353 B = 7452.919059 C = 8026.421574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.095 3.905 3 N -0.252 5.252 4 N -0.271 5.271 5 S 0.424 5.576 6 C -0.284 4.284 7 C 0.609 3.391 8 O -0.519 6.519 9 N -0.602 5.602 10 C 0.088 3.912 11 C -0.137 4.137 12 C 0.172 3.828 13 H 0.071 0.929 14 N -0.709 5.709 15 C -0.252 4.252 16 H 0.074 0.926 17 C -0.006 4.006 18 N -0.928 5.928 19 Si 0.909 3.091 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.082 3.918 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.388 0.612 32 H 0.257 0.743 33 H 0.077 0.923 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.494 17.590 0.613 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.052 4.052 3 N -0.119 5.119 4 N -0.251 5.251 5 S 0.561 5.439 6 C -0.424 4.424 7 C 0.394 3.606 8 O -0.397 6.397 9 N -0.336 5.336 10 C -0.037 4.037 11 C -0.176 4.176 12 C 0.059 3.941 13 H 0.089 0.911 14 N -0.349 5.349 15 C -0.383 4.383 16 H 0.092 0.908 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.740 3.260 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.217 1.217 23 C -0.042 4.042 24 H 0.106 0.894 25 H 0.100 0.900 26 H 0.120 0.880 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.222 0.778 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.382 18.495 0.735 18.561 hybrid contribution -1.407 -1.344 0.160 1.952 sum -0.025 17.151 0.895 17.174 Atomic orbital electron populations 1.20518 0.83796 1.04929 1.04342 1.22948 1.00219 0.85194 0.96851 1.70679 0.97095 1.28085 1.15993 1.78722 1.09411 1.17480 1.19518 1.82818 1.10093 0.99932 1.51091 1.27811 0.97905 1.00098 1.16604 1.16059 0.85261 0.81320 0.77959 1.90814 1.15308 1.82687 1.50891 1.48402 1.06331 1.07779 1.71067 1.22267 0.80305 0.99920 1.01166 1.22944 0.99402 0.92056 1.03184 1.21331 0.89986 0.85446 0.97297 0.91105 1.42312 1.66876 0.98803 1.26859 1.19310 1.29774 0.86135 1.03068 0.90771 1.24778 1.00654 0.97423 0.97456 1.69664 1.46866 1.18827 1.22192 0.86098 0.78341 0.82245 0.79353 1.20375 1.21675 1.21715 1.23609 1.02421 0.75686 1.02506 0.89374 0.89991 0.88017 0.91209 0.91247 0.89989 0.89626 0.77752 0.93291 0.90447 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 9.89 36.01 0.36 -0.42 16 2 C 0.09 1.18 7.00 -82.84 -0.58 0.60 16 3 N -0.25 -3.33 11.54 33.42 0.39 -2.94 16 4 N -0.27 -3.40 12.51 60.35 0.75 -2.64 16 5 S 0.42 4.29 19.63 -107.50 -2.11 2.18 16 6 C -0.28 -3.59 6.66 -35.95 -0.24 -3.83 16 7 C 0.61 9.09 7.84 -12.63 -0.10 8.99 16 8 O -0.52 -9.12 15.15 5.26 0.08 -9.04 16 9 N -0.60 -8.64 3.33 -171.87 -0.57 -9.21 16 10 C 0.09 0.99 5.26 -3.06 -0.02 0.97 16 11 C -0.14 -1.78 6.60 -24.89 -0.16 -1.95 16 12 C 0.17 2.99 3.71 -65.77 -0.24 2.75 16 13 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 14 N -0.71 -16.05 5.24 -51.34 -0.27 -16.32 16 15 C -0.25 -6.51 9.96 -15.06 -0.15 -6.66 16 16 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 17 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 18 N -0.93 -26.50 13.06 55.49 0.72 -25.77 16 19 Si 0.91 21.39 29.55 -169.99 -5.02 16.36 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.08 1.40 6.60 -2.52 -0.02 1.38 16 24 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.10 1.16 6.48 -51.93 -0.34 0.82 16 27 H 0.07 0.65 7.02 -51.93 -0.36 0.29 16 28 H 0.07 0.65 7.17 -51.93 -0.37 0.28 16 29 H 0.08 1.08 8.00 -51.93 -0.42 0.67 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.39 9.29 7.76 -40.82 -0.32 8.97 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.08 1.42 8.04 -51.93 -0.42 1.01 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 301.62 15.07 4.55 4.55 Total: -1.00 -30.34 301.62 -6.61 -36.95 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -3.88 Total: 4.31 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.25 Total: 1.58 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 1.02 Total: -56.88 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.04 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -2.11 Total: 2.18 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.34 -6.61 -36.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018493403.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.253 kcal (2) G-P(sol) polarization free energy of solvation -30.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds