Wall clock time and date at job start Tue Mar 31 2020 05:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31240 * 124.05912 * 2 1 4 4 N 1.27331 * 120.04046 * 180.02562 * 3 2 1 5 5 S 1.56646 * 109.74080 * 359.69087 * 4 3 2 6 6 C 1.38249 * 124.05206 * 180.02562 * 2 1 3 7 7 C 1.47165 * 128.47731 * 359.97438 * 6 2 1 8 8 O 1.21623 * 120.00357 * 0.02562 * 7 6 2 9 9 N 1.34777 * 120.00127 * 180.02562 * 7 6 2 10 10 C 1.46505 * 120.00054 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.84576 * 336.18813 * 10 9 7 12 12 C 1.53780 * 113.69419 * 107.46236 * 10 9 7 13 13 C 1.53778 * 87.08092 * 139.99168 * 12 10 9 14 14 H 1.08998 * 113.68905 * 220.01231 * 13 12 10 15 15 N 1.46499 * 113.61557 * 89.11527 * 13 12 10 16 16 C 1.36939 * 119.99933 * 107.77738 * 15 13 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 13 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 13 19 19 N 1.31612 * 120.00054 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99751 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47517 * 89.99708 * 20 18 16 22 22 H 1.48502 * 109.46736 * 209.99481 * 20 18 16 23 23 H 1.48496 * 109.47375 * 329.99177 * 20 18 16 24 24 C 1.53783 * 113.61103 * 205.00032 * 10 9 7 25 25 H 1.09000 * 109.46892 * 269.98250 * 1 2 3 26 26 H 1.09004 * 109.46874 * 29.97799 * 1 2 3 27 27 H 1.08995 * 109.47461 * 149.97731 * 1 2 3 28 28 H 0.97004 * 119.99851 * 359.97438 * 9 7 6 29 29 H 1.08998 * 113.61038 * 25.44202 * 12 10 9 30 30 H 1.08998 * 113.61309 * 254.53784 * 12 10 9 31 31 H 0.97001 * 119.99790 * 287.49711 * 15 13 12 32 32 H 0.96998 * 120.00381 * 180.02562 * 19 18 16 33 33 H 1.09000 * 113.61551 * 105.38348 * 24 10 9 34 34 H 1.09004 * 113.69000 * 334.48484 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5121 0.9980 -0.0005 5 16 3.9366 -0.5098 0.0069 6 6 2.2811 -1.1454 -0.0005 7 6 1.8393 -2.5492 -0.0006 8 8 0.6520 -2.8131 -0.0007 9 7 2.7503 -3.5424 -0.0006 10 6 2.3104 -4.9399 -0.0013 11 1 1.3066 -5.0678 0.4038 12 6 2.5285 -5.6557 -1.3448 13 6 2.9568 -6.8872 -0.5294 14 1 3.8063 -7.4208 -0.9556 15 7 1.8451 -7.7747 -0.1791 16 6 1.7156 -8.9880 -0.8006 17 1 2.4305 -9.2888 -1.5522 18 6 0.6656 -9.8315 -0.4645 19 7 0.5409 -10.9974 -1.0622 20 14 -0.5711 -9.3110 0.8352 21 1 -1.6913 -8.5814 0.1887 22 1 -1.0982 -10.5147 1.5270 23 1 0.0930 -8.4234 1.8232 24 6 3.3434 -5.9111 0.5942 25 1 -0.3633 -0.0003 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8897 -0.5141 28 1 3.6972 -3.3320 -0.0009 29 1 3.3326 -5.2266 -1.9426 30 1 1.6108 -5.8062 -1.9133 31 1 1.2032 -7.5046 0.4961 32 1 -0.1930 -11.5867 -0.8276 33 1 3.0836 -6.2676 1.5910 34 1 4.3708 -5.5529 0.5272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019982387.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:08 Heat of formation + Delta-G solvation = 73.106258 kcal Electronic energy + Delta-G solvation = -19197.253273 eV Core-core repulsion = 16066.135621 eV Total energy + Delta-G solvation = -3131.117651 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.29741 -40.02019 -38.24443 -34.38143 -33.58961 -32.81351 -30.49219 -28.77053 -27.26615 -25.35051 -24.83744 -23.10616 -22.06664 -20.69827 -19.16123 -18.83292 -17.77280 -17.46068 -16.42979 -16.31876 -15.06398 -14.98009 -14.80717 -14.41033 -14.16306 -13.41167 -13.29321 -13.17841 -12.83279 -12.74584 -12.38801 -12.23288 -12.19240 -11.87517 -11.02609 -10.93618 -10.67144 -10.50961 -10.43590 -10.20252 -10.18336 -10.04914 -9.92222 -9.65310 -9.09031 -8.96555 -7.38029 -5.84404 -3.21872 -0.61486 0.45317 1.10723 1.60728 2.73683 2.80827 3.34194 3.37964 3.43077 3.54564 4.22858 4.42001 4.53103 4.77651 4.93523 4.97671 5.08697 5.30954 5.31878 5.42630 5.56219 5.67691 5.81542 5.88615 5.94357 6.10060 6.34172 6.43685 6.53719 6.75064 7.18053 7.32382 7.86411 7.91426 8.34531 9.11454 9.83745 10.01394 11.33319 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.032537 B = 0.003631 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.347681 B = 7709.146644 C = 8294.462922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.101 3.899 3 N -0.250 5.250 4 N -0.254 5.254 5 S 0.411 5.589 6 C -0.288 4.288 7 C 0.598 3.402 8 O -0.511 6.511 9 N -0.706 5.706 10 C 0.121 3.879 11 H 0.115 0.885 12 C -0.182 4.182 13 C 0.178 3.822 14 H 0.079 0.921 15 N -0.729 5.729 16 C -0.252 4.252 17 H 0.093 0.907 18 C 0.009 3.991 19 N -0.930 5.930 20 Si 0.882 3.118 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.277 1.277 24 C -0.166 4.166 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.396 0.604 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.363 0.637 32 H 0.261 0.739 33 H 0.074 0.926 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.333 21.639 3.255 23.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.046 4.046 3 N -0.117 5.117 4 N -0.234 5.234 5 S 0.547 5.453 6 C -0.429 4.429 7 C 0.381 3.619 8 O -0.387 6.387 9 N -0.357 5.357 10 C 0.018 3.982 11 H 0.133 0.867 12 C -0.224 4.224 13 C 0.065 3.935 14 H 0.097 0.903 15 N -0.369 5.369 16 C -0.381 4.381 17 H 0.111 0.889 18 C -0.187 4.187 19 N -0.577 5.577 20 Si 0.712 3.288 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.206 4.206 25 H 0.108 0.892 26 H 0.102 0.898 27 H 0.122 0.878 28 H 0.231 0.769 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.196 0.804 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.111 22.304 3.122 23.937 hybrid contribution -1.695 -0.057 0.903 1.921 sum 6.416 22.247 4.024 23.501 Atomic orbital electron populations 1.20559 0.83635 1.05173 1.04481 1.22992 1.00309 0.85007 0.96298 1.70621 0.96906 1.28023 1.16113 1.78888 1.09480 1.15556 1.19494 1.82509 1.09987 1.01679 1.51141 1.27881 0.97952 1.00267 1.16829 1.16503 0.86271 0.81881 0.77240 1.90842 1.15759 1.82862 1.49216 1.46029 1.08783 1.06726 1.74120 1.22840 0.99970 0.76220 0.99179 0.86672 1.24314 1.02489 0.99187 0.96422 1.20846 0.91583 0.88600 0.92480 0.90259 1.42543 1.29077 1.18379 1.46907 1.19083 1.10236 0.91569 1.17226 0.88917 1.24675 0.98542 0.96182 0.99342 1.69691 1.33223 1.09866 1.44884 0.86589 0.82296 0.77649 0.82237 1.20809 1.21578 1.20282 1.23953 0.98304 0.97263 1.01037 0.89234 0.89831 0.87842 0.76932 0.90621 0.90532 0.80355 0.92890 0.90682 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 9.90 36.00 0.36 -0.37 16 2 C 0.10 1.11 7.00 -82.84 -0.58 0.53 16 3 N -0.25 -2.95 11.54 33.42 0.39 -2.57 16 4 N -0.25 -2.78 12.51 60.35 0.75 -2.02 16 5 S 0.41 3.30 23.05 -107.50 -2.48 0.82 16 6 C -0.29 -3.06 6.81 -35.95 -0.24 -3.30 16 7 C 0.60 7.50 7.80 -12.64 -0.10 7.40 16 8 O -0.51 -8.09 14.49 5.26 0.08 -8.02 16 9 N -0.71 -7.76 5.35 -54.17 -0.29 -8.05 16 10 C 0.12 1.67 4.11 -67.11 -0.28 1.39 16 11 H 0.12 1.88 7.46 -51.93 -0.39 1.49 16 12 C -0.18 -2.75 7.68 -25.92 -0.20 -2.95 16 13 C 0.18 3.06 4.56 -67.12 -0.31 2.75 16 14 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 15 N -0.73 -16.31 5.11 -52.64 -0.27 -16.58 16 16 C -0.25 -6.83 10.45 -15.06 -0.16 -6.99 16 17 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 18 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 19 N -0.93 -28.60 13.97 55.49 0.78 -27.83 16 20 Si 0.88 21.69 27.74 -169.99 -4.71 16.98 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 24 C -0.17 -2.18 7.58 -25.91 -0.20 -2.37 16 25 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.10 1.09 6.47 -51.93 -0.34 0.75 16 28 H 0.40 3.10 8.16 -40.82 -0.33 2.77 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.36 8.08 5.76 -40.82 -0.24 7.84 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 LS Contribution 307.03 15.07 4.63 4.63 Total: -1.00 -32.55 307.03 -6.77 -39.32 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -3.84 Total: 7.06 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -1.80 Total: -3.75 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 1.36 Total: -57.05 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.08 Total: -8.02 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.98 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -2.48 Total: 0.82 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.55 -6.77 -39.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019982387.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.428 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds