Wall clock time and date at job start Tue Mar 31 2020 06:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 120.00226 * 2 1 4 4 O 1.21563 * 119.99957 * 176.28300 * 3 2 1 5 5 C 1.47749 * 119.99974 * 356.28424 * 3 2 1 6 6 C 1.39345 * 124.11589 * 186.31450 * 5 3 2 7 7 N 1.30104 * 112.14218 * 179.82123 * 6 5 3 8 8 S 1.55914 * 108.75320 * 0.42723 * 7 6 5 9 9 N 1.31498 * 124.11483 * 6.61156 * 5 3 2 10 10 C 1.46500 * 119.99701 * 180.02562 * 2 1 3 11 11 H 1.09002 * 110.64188 * 178.31059 * 10 2 1 12 12 C 1.55157 * 110.72473 * 54.97424 * 10 2 1 13 13 C 1.55132 * 101.48696 * 205.96828 * 12 10 2 14 14 N 1.47417 * 104.72099 * 37.29470 * 13 12 10 15 15 C 1.36940 * 125.65059 * 155.81475 * 14 13 12 16 16 H 1.07992 * 120.00643 * 190.36005 * 15 14 13 17 17 C 1.38817 * 119.99508 * 10.36344 * 15 14 13 18 18 N 1.31621 * 119.99749 * 9.20993 * 17 15 14 19 19 Si 1.86798 * 119.99899 * 189.20570 * 17 15 14 20 20 H 1.48499 * 109.47181 * 265.03175 * 19 17 15 21 21 H 1.48500 * 109.47221 * 25.03098 * 19 17 15 22 22 H 1.48499 * 109.46739 * 145.02918 * 19 17 15 23 23 C 1.47020 * 108.70577 * 335.55331 * 14 13 12 24 24 H 1.08997 * 109.46847 * 275.85585 * 1 2 3 25 25 H 1.08999 * 109.47298 * 35.85663 * 1 2 3 26 26 H 1.09000 * 109.47306 * 155.85900 * 1 2 3 27 27 H 1.07994 * 123.93022 * 0.02562 * 6 5 3 28 28 H 1.08998 * 110.99836 * 324.20945 * 12 10 2 29 29 H 1.09005 * 111.00311 * 88.02119 * 12 10 2 30 30 H 1.08999 * 110.49488 * 278.45124 * 13 12 10 31 31 H 1.08996 * 110.33937 * 156.05648 * 13 12 10 32 32 H 0.97001 * 119.99501 * 180.02562 * 18 17 15 33 33 H 1.09000 * 109.88621 * 120.70793 * 23 14 13 34 34 H 1.09010 * 109.88534 * 241.87211 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3526 1.1682 0.0682 5 6 1.4025 2.4454 -0.0829 6 6 2.0121 3.6913 -0.2162 7 7 1.1439 4.6588 -0.2705 8 16 -0.2884 4.0540 -0.1530 9 7 0.0923 2.5462 -0.0343 10 6 2.1974 -1.2688 -0.0006 11 1 3.2726 -1.0918 -0.0306 12 6 1.7506 -2.1602 -1.1893 13 6 2.0690 -3.5788 -0.6484 14 7 1.7323 -3.5174 0.7854 15 6 1.4003 -4.5867 1.5739 16 1 1.0086 -4.4243 2.5671 17 6 1.5672 -5.8794 1.0963 18 7 2.2091 -6.0855 -0.0341 19 14 0.8811 -7.3262 2.0582 20 1 1.9432 -7.8895 2.9298 21 1 -0.2562 -6.8688 2.8964 22 1 0.4108 -8.3705 1.1130 23 6 1.8182 -2.1188 1.2304 24 1 -0.3633 0.1048 1.0223 25 1 -0.3634 0.8329 -0.6020 26 1 -0.3634 -0.9378 -0.4203 27 1 3.0808 3.8367 -0.2717 28 1 0.6849 -2.0435 -1.3861 29 1 2.3368 -1.9431 -2.0824 30 1 3.1262 -3.8091 -0.7804 31 1 1.4520 -4.3234 -1.1514 32 1 2.3254 -6.9888 -0.3679 33 1 0.8540 -1.7944 1.6221 34 1 2.5848 -2.0206 1.9991 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032915446.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:24 Heat of formation + Delta-G solvation = 74.951451 kcal Electronic energy + Delta-G solvation = -19915.431771 eV Core-core repulsion = 16784.394133 eV Total energy + Delta-G solvation = -3131.037638 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.38380 -39.37288 -37.31910 -35.07550 -33.67899 -32.04157 -29.29390 -28.03293 -27.45322 -26.37173 -24.60923 -23.07380 -20.54349 -20.29803 -19.69290 -19.03040 -17.19322 -16.91478 -16.40906 -16.23299 -15.41526 -14.78837 -14.69023 -14.14914 -13.96392 -13.04838 -13.02729 -12.88347 -12.46965 -12.20066 -11.95992 -11.65371 -11.56171 -11.45332 -10.95483 -10.89895 -10.82436 -10.77107 -10.42898 -10.09837 -9.91961 -9.88754 -9.69418 -9.45082 -8.61639 -8.41827 -6.83253 -5.76986 -3.10363 0.18084 1.15767 1.35862 1.38479 2.97820 3.04508 3.38805 3.44563 3.46554 4.20700 4.47409 4.49997 4.88782 5.23747 5.34068 5.36258 5.40809 5.51662 5.64118 5.77352 5.80485 6.07439 6.11629 6.16226 6.33174 6.50265 6.52252 6.67189 6.90923 7.41597 7.45134 7.55919 7.75160 8.05802 8.23049 9.16476 9.77971 10.44799 11.36020 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.042469 B = 0.003677 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.153479 B = 7612.121735 C = 7885.923644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.576 5.576 3 C 0.596 3.404 4 O -0.529 6.529 5 C 0.021 3.979 6 C 0.089 3.911 7 N -0.577 5.577 8 S 0.690 5.310 9 N -0.533 5.533 10 C 0.126 3.874 11 H 0.108 0.892 12 C -0.155 4.155 13 C 0.175 3.825 14 N -0.601 5.601 15 C -0.230 4.230 16 H 0.076 0.924 17 C -0.006 4.006 18 N -0.918 5.918 19 Si 0.912 3.088 20 H -0.289 1.289 21 H -0.280 1.280 22 H -0.290 1.290 23 C 0.130 3.870 24 H 0.057 0.943 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.214 0.786 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.253 0.747 33 H 0.029 0.971 34 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.790 19.284 -2.792 20.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.307 5.307 3 C 0.378 3.622 4 O -0.405 6.405 5 C -0.154 4.154 6 C -0.105 4.105 7 N -0.417 5.417 8 S 0.733 5.267 9 N -0.383 5.383 10 C 0.023 3.977 11 H 0.126 0.874 12 C -0.194 4.194 13 C 0.050 3.950 14 N -0.328 5.328 15 C -0.358 4.358 16 H 0.094 0.906 17 C -0.202 4.202 18 N -0.565 5.565 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.206 1.206 22 H -0.216 1.216 23 C 0.003 3.997 24 H 0.076 0.924 25 H 0.113 0.887 26 H 0.096 0.904 27 H 0.231 0.769 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -7.030 20.031 -2.770 21.409 hybrid contribution 1.264 -1.593 0.554 2.108 sum -5.766 18.438 -2.216 19.445 Atomic orbital electron populations 1.22232 0.78482 1.03696 1.02718 1.47720 1.07933 1.05256 1.69747 1.16836 0.86050 0.81444 0.77905 1.90822 1.12417 1.86173 1.51072 1.22644 0.87525 0.98073 1.07170 1.23794 1.02792 0.85233 0.98646 1.72261 1.08061 1.37724 1.23664 1.79178 1.11661 0.88634 1.47255 1.73130 1.18301 1.25425 1.21423 1.22375 0.97164 0.80751 0.97418 0.87443 1.23461 1.00830 0.98676 0.96418 1.21445 0.99001 0.90419 0.84139 1.44426 1.81383 1.00821 1.06144 1.19014 1.35391 0.83866 0.97565 0.90601 1.24834 1.00132 0.97290 0.97987 1.69948 1.44627 1.20126 1.21753 0.86113 0.78610 0.82318 0.78781 1.21578 1.20583 1.21593 1.21522 0.98122 0.86295 0.93746 0.92444 0.88690 0.90402 0.76943 0.91471 0.91735 0.95104 0.90923 0.93636 0.95335 0.95512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.97 8.30 59.85 0.50 1.47 16 2 N -0.58 -9.02 2.88 -172.99 -0.50 -9.52 16 3 C 0.60 9.14 7.67 -12.37 -0.09 9.04 16 4 O -0.53 -9.36 16.19 5.31 0.09 -9.28 16 5 C 0.02 0.26 6.59 -83.71 -0.55 -0.30 16 6 C 0.09 0.95 11.23 -17.87 -0.20 0.75 16 7 N -0.58 -5.86 11.41 19.43 0.22 -5.64 16 8 S 0.69 5.58 23.69 -107.50 -2.55 3.04 16 9 N -0.53 -5.79 7.69 23.17 0.18 -5.61 16 10 C 0.13 2.30 3.35 -66.10 -0.22 2.08 16 11 H 0.11 2.08 7.00 -51.93 -0.36 1.72 16 12 C -0.15 -2.85 6.60 -24.46 -0.16 -3.01 16 13 C 0.18 4.16 5.43 -2.41 -0.01 4.15 16 14 N -0.60 -15.26 3.39 -169.94 -0.58 -15.84 16 15 C -0.23 -6.38 10.24 -15.06 -0.15 -6.54 16 16 H 0.08 2.05 7.84 -52.49 -0.41 1.63 16 17 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 18 N -0.92 -26.65 10.68 55.49 0.59 -26.06 16 19 Si 0.91 21.86 29.56 -169.99 -5.03 16.83 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.13 2.76 6.88 -3.07 -0.02 2.74 16 24 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 25 H 0.10 1.13 5.25 -51.93 -0.27 0.86 16 26 H 0.08 1.08 6.14 -51.93 -0.32 0.76 16 27 H 0.21 1.90 8.06 -52.49 -0.42 1.48 16 28 H 0.07 1.17 6.15 -51.93 -0.32 0.85 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 31 H 0.07 1.90 6.95 -51.93 -0.36 1.54 16 32 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.03 0.59 7.07 -51.93 -0.37 0.22 16 34 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 LS Contribution 293.72 15.07 4.43 4.43 Total: -1.00 -31.56 293.72 -7.81 -39.37 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -3.66 Total: -1.85 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -1.02 Total: 10.13 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -0.08 Total: -62.67 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Atomic # 16 Polarization: 5.58 SS G_CDS: -2.55 Total: 3.04 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.56 -7.81 -39.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032915446.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.321 kcal (2) G-P(sol) polarization free energy of solvation -31.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds