Wall clock time and date at job start Tue Mar 31 2020 06:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34781 * 119.99859 * 2 1 4 4 O 1.21618 * 120.00173 * 185.97788 * 3 2 1 5 5 C 1.47172 * 120.00043 * 5.97473 * 3 2 1 6 6 C 1.38241 * 128.47606 * 187.02104 * 5 3 2 7 7 N 1.31242 * 111.88815 * 179.80902 * 6 5 3 8 8 N 1.27343 * 120.03646 * 0.53281 * 7 6 5 9 9 S 1.56634 * 109.73998 * 359.69235 * 8 7 6 10 10 C 1.46494 * 120.00302 * 180.02562 * 2 1 3 11 11 H 1.09004 * 110.91969 * 183.90182 * 10 2 1 12 12 C 1.55151 * 111.00485 * 59.99994 * 10 2 1 13 13 C 1.54330 * 102.94273 * 206.42636 * 12 10 2 14 14 N 1.47023 * 107.27126 * 22.19008 * 13 12 10 15 15 C 1.36933 * 125.64517 * 181.02453 * 14 13 12 16 16 H 1.08003 * 119.99806 * 174.79754 * 15 14 13 17 17 C 1.38810 * 120.00108 * 354.80247 * 15 14 13 18 18 N 1.31625 * 119.99481 * 212.87574 * 17 15 14 19 19 Si 1.86793 * 120.00086 * 33.15803 * 17 15 14 20 20 H 1.48498 * 109.47174 * 174.04613 * 19 17 15 21 21 H 1.48508 * 109.47208 * 294.04317 * 19 17 15 22 22 H 1.48498 * 109.47468 * 54.04290 * 19 17 15 23 23 C 1.47424 * 108.70283 * 1.28893 * 14 13 12 24 24 H 1.09004 * 109.46660 * 275.78601 * 1 2 3 25 25 H 1.08990 * 109.47075 * 35.78306 * 1 2 3 26 26 H 1.08994 * 109.46984 * 155.78882 * 1 2 3 27 27 H 1.08000 * 124.05622 * 359.97148 * 6 5 3 28 28 H 1.08997 * 110.72428 * 88.06335 * 12 10 2 29 29 H 1.09003 * 110.87105 * 324.85488 * 12 10 2 30 30 H 1.09000 * 109.87891 * 262.77133 * 13 12 10 31 31 H 1.09001 * 110.00952 * 141.68456 * 13 12 10 32 32 H 0.96992 * 120.00259 * 5.29259 * 18 17 15 33 33 H 1.08996 * 110.36797 * 94.48024 * 23 14 13 34 34 H 1.08998 * 110.36388 * 216.81002 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3501 1.1702 -0.1097 5 6 1.4090 2.4383 0.1327 6 6 1.8982 3.7266 0.0227 7 7 0.9566 4.6241 0.1970 8 7 -0.2369 4.2558 0.4450 9 16 -0.3114 2.6916 0.4802 10 6 2.1976 -1.2686 -0.0006 11 1 3.2719 -1.0978 0.0688 12 6 1.8485 -2.1118 -1.2553 13 6 2.1065 -3.5581 -0.7826 14 7 2.0266 -3.5583 0.6855 15 6 2.2164 -4.6465 1.4948 16 1 2.2192 -4.5271 2.5682 17 6 2.4052 -5.9029 0.9357 18 7 1.9617 -6.9739 1.5590 19 14 3.2956 -6.0741 -0.6975 20 1 3.4935 -7.5134 -1.0048 21 1 2.4850 -5.4456 -1.7715 22 1 4.6158 -5.3995 -0.6147 23 6 1.7022 -2.1944 1.1414 24 1 -0.3633 0.1036 1.0225 25 1 -0.3633 0.8336 -0.6008 26 1 -0.3633 -0.9372 -0.4214 27 1 2.9308 3.9658 -0.1845 28 1 2.5044 -1.8552 -2.0872 29 1 0.8034 -1.9781 -1.5346 30 1 3.0982 -3.8804 -1.1000 31 1 1.3502 -4.2259 -1.1952 32 1 1.4366 -6.8810 2.3692 33 1 0.6265 -2.0868 1.2805 34 1 2.2299 -1.9687 2.0681 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032935328.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:17 Heat of formation + Delta-G solvation = 92.311276 kcal Electronic energy + Delta-G solvation = -19891.837718 eV Core-core repulsion = 16761.552858 eV Total energy + Delta-G solvation = -3130.284859 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.09068 -40.12322 -37.79294 -35.31989 -32.76526 -32.11158 -29.74551 -28.61386 -27.88476 -26.94557 -24.29418 -23.05830 -21.09606 -20.50272 -19.77535 -19.21624 -17.60887 -17.29817 -16.81690 -16.30291 -15.42045 -15.28330 -15.14688 -14.47146 -13.65362 -13.53322 -13.38184 -13.24872 -13.05821 -12.80634 -12.64488 -12.25585 -12.10094 -11.48826 -11.18806 -11.14432 -10.69748 -10.40764 -10.36184 -10.27279 -10.09379 -10.02541 -9.74846 -9.16549 -8.79950 -8.42262 -7.20426 -6.44279 -3.21867 -0.56306 0.48628 1.20928 1.68960 2.58096 2.71199 3.38773 3.52200 3.69032 3.70980 4.12999 4.41697 4.60426 4.64367 4.83498 4.95752 5.07446 5.19203 5.25159 5.28135 5.34165 5.44115 5.69733 5.75365 6.06931 6.18198 6.32776 6.46731 6.52746 6.69118 7.05181 7.35444 7.59971 7.76405 8.26136 8.94334 9.50756 10.15974 11.03776 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.041906 B = 0.004043 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.006620 B = 6923.145789 C = 7183.592867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.590 5.590 3 C 0.598 3.402 4 O -0.516 6.516 5 C -0.285 4.285 6 C 0.070 3.930 7 N -0.254 5.254 8 N -0.280 5.280 9 S 0.439 5.561 10 C 0.122 3.878 11 H 0.115 0.885 12 C -0.140 4.140 13 C 0.121 3.879 14 N -0.606 5.606 15 C -0.343 4.343 16 H 0.081 0.919 17 C -0.007 4.007 18 N -0.903 5.903 19 Si 1.035 2.965 20 H -0.298 1.298 21 H -0.278 1.278 22 H -0.295 1.295 23 C 0.134 3.866 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.102 0.898 27 H 0.215 0.785 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.049 0.951 32 H 0.265 0.735 33 H 0.032 0.968 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.794 18.239 -4.949 19.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.322 5.322 3 C 0.383 3.617 4 O -0.393 6.393 5 C -0.426 4.426 6 C -0.097 4.097 7 N -0.118 5.118 8 N -0.260 5.260 9 S 0.575 5.425 10 C 0.019 3.981 11 H 0.132 0.868 12 C -0.178 4.178 13 C -0.004 4.004 14 N -0.334 5.334 15 C -0.469 4.469 16 H 0.099 0.901 17 C -0.210 4.210 18 N -0.541 5.541 19 Si 0.866 3.134 20 H -0.225 1.225 21 H -0.205 1.205 22 H -0.223 1.223 23 C 0.007 3.993 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.120 0.880 27 H 0.231 0.769 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.340 17.824 -5.645 19.743 hybrid contribution 0.927 0.894 0.838 1.537 sum -5.413 18.719 -4.807 20.070 Atomic orbital electron populations 1.22105 0.79821 1.04023 1.02645 1.47627 1.06939 1.05771 1.71897 1.16528 0.86366 0.81299 0.77523 1.90856 1.12658 1.86184 1.49578 1.28089 0.99667 0.99773 1.15060 1.24472 1.01866 0.85937 0.97386 1.70818 0.94311 1.32078 1.14560 1.78673 1.16134 1.12166 1.19048 1.83018 1.05691 1.05185 1.48560 1.22725 0.97773 0.80378 0.97261 0.86757 1.22979 1.01708 0.96009 0.97151 1.21910 0.98835 0.93692 0.85998 1.44762 1.83323 1.04857 1.00451 1.19960 1.51830 0.84942 0.90208 0.90145 1.25598 1.00271 0.90670 1.04441 1.70925 1.33365 1.30317 1.19519 0.84443 0.77371 0.74562 0.77007 1.22526 1.20455 1.22333 1.21819 0.97762 0.84997 0.94724 0.90994 0.91661 0.87991 0.76871 0.90862 0.90922 0.95262 0.93366 0.92483 0.95084 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.52 7.51 59.85 0.45 0.97 16 2 N -0.59 -7.36 2.91 -172.71 -0.50 -7.86 16 3 C 0.60 7.85 7.65 -12.63 -0.10 7.75 16 4 O -0.52 -8.47 16.39 5.26 0.09 -8.38 16 5 C -0.28 -3.01 6.44 -35.95 -0.23 -3.24 16 6 C 0.07 0.72 11.56 -17.80 -0.21 0.51 16 7 N -0.25 -2.92 11.54 30.36 0.35 -2.57 16 8 N -0.28 -3.09 12.51 60.35 0.75 -2.33 16 9 S 0.44 3.65 19.08 -107.50 -2.05 1.60 16 10 C 0.12 1.91 3.44 -65.67 -0.23 1.68 16 11 H 0.11 1.99 7.05 -51.93 -0.37 1.63 16 12 C -0.14 -2.15 6.49 -24.90 -0.16 -2.31 16 13 C 0.12 2.47 4.58 -3.06 -0.01 2.46 16 14 N -0.61 -14.09 3.38 -169.93 -0.57 -14.67 16 15 C -0.34 -9.48 10.40 -15.06 -0.16 -9.64 16 16 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 17 C -0.01 -0.21 5.44 -17.43 -0.09 -0.31 16 18 N -0.90 -27.40 13.70 55.49 0.76 -26.64 16 19 Si 1.03 25.26 25.05 -169.99 -4.26 21.00 16 20 H -0.30 -7.48 7.11 56.52 0.40 -7.07 16 21 H -0.28 -6.08 5.08 56.52 0.29 -5.79 16 22 H -0.30 -7.11 7.11 56.52 0.40 -6.70 16 23 C 0.13 2.48 6.79 -2.41 -0.02 2.47 16 24 H 0.07 0.54 7.67 -51.93 -0.40 0.14 16 25 H 0.07 0.44 5.28 -32.74 -0.17 0.27 16 26 H 0.10 0.89 6.36 -51.93 -0.33 0.55 16 27 H 0.21 1.74 8.06 -52.49 -0.42 1.31 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 0.95 6.48 -51.93 -0.34 0.62 16 30 H 0.03 0.64 4.76 -51.93 -0.25 0.39 16 31 H 0.05 1.03 6.69 -51.93 -0.35 0.69 16 32 H 0.27 7.94 8.73 -40.82 -0.36 7.58 16 33 H 0.03 0.54 6.94 -51.93 -0.36 0.17 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 286.52 15.07 4.32 4.32 Total: -1.00 -33.01 286.52 -5.39 -38.39 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: -3.52 Total: -3.19 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -0.75 Total: 0.34 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.79 Total: -54.08 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -4.26 Total: 21.00 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -2.05 Total: 1.60 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.01 -5.39 -38.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032935328.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.704 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds