Wall clock time and date at job start Tue Mar 31 2020 06:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34783 * 120.00175 * 2 1 4 4 O 1.21619 * 120.00155 * 177.59265 * 3 2 1 5 5 C 1.47169 * 119.99773 * 357.59103 * 3 2 1 6 6 C 1.38246 * 128.47414 * 187.41566 * 5 3 2 7 7 N 1.31241 * 111.88653 * 179.81111 * 6 5 3 8 8 N 1.27339 * 120.03908 * 0.52824 * 7 6 5 9 9 S 1.56638 * 109.73952 * 359.69751 * 8 7 6 10 10 C 1.46500 * 120.00071 * 179.97438 * 2 1 3 11 11 H 1.09004 * 110.64218 * 181.68491 * 10 2 1 12 12 C 1.55150 * 110.72255 * 305.02459 * 10 2 1 13 13 C 1.55133 * 101.48790 * 82.69511 * 12 10 2 14 14 N 1.47425 * 104.71654 * 37.29505 * 13 12 10 15 15 C 1.36938 * 125.64326 * 155.81838 * 14 13 12 16 16 H 1.07998 * 119.99761 * 191.14305 * 15 14 13 17 17 C 1.38808 * 120.00084 * 11.14616 * 15 14 13 18 18 N 1.31626 * 120.00222 * 205.32357 * 17 15 14 19 19 Si 1.86797 * 120.00233 * 25.32446 * 17 15 14 20 20 H 1.48507 * 109.47332 * 270.00251 * 19 17 15 21 21 H 1.48500 * 109.47251 * 30.00104 * 19 17 15 22 22 H 1.48503 * 109.47461 * 150.00206 * 19 17 15 23 23 C 1.47022 * 108.70591 * 335.55481 * 14 13 12 24 24 H 1.09001 * 109.46871 * 275.97808 * 1 2 3 25 25 H 1.08998 * 109.47029 * 35.98029 * 1 2 3 26 26 H 1.09002 * 109.47152 * 155.97830 * 1 2 3 27 27 H 1.07994 * 124.05527 * 359.97438 * 6 5 3 28 28 H 1.08997 * 111.00643 * 200.93572 * 12 10 2 29 29 H 1.09005 * 111.00427 * 324.74816 * 12 10 2 30 30 H 1.08998 * 110.49161 * 278.45675 * 13 12 10 31 31 H 1.08997 * 110.34436 * 156.06172 * 13 12 10 32 32 H 0.97004 * 119.99631 * 354.94228 * 18 17 15 33 33 H 1.09004 * 109.87881 * 120.70521 * 23 14 13 34 34 H 1.09000 * 109.87962 * 241.86874 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3543 1.1677 0.0442 5 6 1.4040 2.4412 -0.0536 6 6 1.9087 3.7197 -0.2019 7 7 0.9569 4.6233 -0.2112 8 7 -0.2594 4.2694 -0.0812 9 16 -0.3446 2.7121 0.0640 10 6 2.1975 -1.2687 0.0006 11 1 3.2726 -1.0917 0.0305 12 6 1.7507 -2.1600 1.1893 13 6 0.4680 -2.8184 0.6168 14 7 0.7745 -3.0624 -0.8044 15 6 0.1812 -4.0077 -1.5979 16 1 0.5939 -4.2328 -2.5702 17 6 -0.9507 -4.6764 -1.1525 18 7 -1.2360 -5.8725 -1.6223 19 14 -2.0692 -3.8791 0.1134 20 1 -1.6163 -4.2506 1.4780 21 1 -2.0178 -2.4030 -0.0404 22 1 -3.4628 -4.3498 -0.0909 23 6 1.8183 -2.1186 -1.2304 24 1 -0.3633 0.1070 1.0221 25 1 -0.3633 0.8316 -0.6038 26 1 -0.3633 -0.9387 -0.4184 27 1 2.9597 3.9472 -0.3011 28 1 2.5076 -2.9089 1.4222 29 1 1.5200 -1.5550 2.0662 30 1 -0.3822 -2.1428 0.7110 31 1 0.2644 -3.7593 1.1280 32 1 -0.6975 -6.2558 -2.3322 33 1 2.6910 -2.6667 -1.5856 34 1 1.4350 -1.4746 -2.0218 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032935329.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:20 Heat of formation + Delta-G solvation = 91.131544 kcal Electronic energy + Delta-G solvation = -20336.922745 eV Core-core repulsion = 17206.586728 eV Total energy + Delta-G solvation = -3130.336016 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.99891 -40.20046 -37.90359 -34.91301 -32.75346 -31.99690 -29.81696 -28.84407 -27.85117 -26.58334 -24.13004 -23.22274 -21.16728 -20.47170 -19.72623 -18.99987 -17.62983 -17.25833 -16.72169 -16.23359 -15.42231 -15.19645 -15.09954 -14.69833 -13.76682 -13.62065 -13.36645 -13.02052 -12.82029 -12.72877 -12.28876 -12.17677 -11.90439 -11.41904 -11.29244 -11.11682 -10.99932 -10.30130 -10.25124 -10.16304 -10.08859 -9.88212 -9.72813 -9.36415 -8.78996 -8.60095 -7.21341 -6.42973 -3.30883 -0.46464 0.58639 1.30868 1.78171 2.67345 2.79456 3.28306 3.34569 3.54167 3.80605 4.20674 4.48112 4.50720 4.81308 4.85390 4.94701 5.10401 5.29073 5.31945 5.35056 5.47536 5.67137 5.71770 5.81351 6.06899 6.12305 6.39495 6.40951 6.55946 6.62410 7.11778 7.45423 7.58099 7.82114 8.23866 8.93170 9.47161 10.12947 11.05601 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.026268 B = 0.005395 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.691834 B = 5188.771112 C = 5820.242522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.585 5.585 3 C 0.598 3.402 4 O -0.523 6.523 5 C -0.288 4.288 6 C 0.069 3.931 7 N -0.255 5.255 8 N -0.286 5.286 9 S 0.447 5.553 10 C 0.127 3.873 11 H 0.113 0.887 12 C -0.139 4.139 13 C 0.093 3.907 14 N -0.606 5.606 15 C -0.332 4.332 16 H 0.076 0.924 17 C -0.019 4.019 18 N -0.918 5.918 19 Si 1.063 2.937 20 H -0.293 1.293 21 H -0.287 1.287 22 H -0.298 1.298 23 C 0.125 3.875 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.124 0.876 27 H 0.214 0.786 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.264 0.736 33 H 0.044 0.956 34 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.207 15.038 5.728 16.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.317 5.317 3 C 0.384 3.616 4 O -0.401 6.401 5 C -0.429 4.429 6 C -0.098 4.098 7 N -0.119 5.119 8 N -0.266 5.266 9 S 0.584 5.416 10 C 0.024 3.976 11 H 0.131 0.869 12 C -0.178 4.178 13 C -0.032 4.032 14 N -0.335 5.335 15 C -0.459 4.459 16 H 0.094 0.906 17 C -0.220 4.220 18 N -0.558 5.558 19 Si 0.895 3.105 20 H -0.221 1.221 21 H -0.215 1.215 22 H -0.225 1.225 23 C -0.001 4.001 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.142 0.858 27 H 0.230 0.770 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.650 15.523 6.656 16.903 hybrid contribution 2.678 -0.008 -1.139 2.910 sum 3.328 15.515 5.517 16.800 Atomic orbital electron populations 1.22569 0.79542 1.05160 1.02268 1.47690 1.07142 1.05589 1.71243 1.16554 0.86393 0.81339 0.77354 1.90824 1.12256 1.86399 1.50600 1.28067 0.99112 0.99911 1.15774 1.24446 1.02081 0.85953 0.97284 1.70843 0.93696 1.31916 1.15468 1.78608 1.15741 1.13404 1.18878 1.83264 1.04271 1.04140 1.49938 1.22296 0.97025 0.81155 0.97131 0.86937 1.23138 0.99625 0.98594 0.96465 1.22328 0.95052 0.99094 0.86721 1.44845 1.44133 1.38913 1.05577 1.20012 1.09502 1.14554 1.01806 0.90605 1.25844 0.97013 0.95509 1.03589 1.70896 1.45823 1.11577 1.27545 0.83881 0.76461 0.74821 0.75305 1.22080 1.21467 1.22543 1.21696 0.93408 0.91161 0.93839 0.91128 0.92333 0.85782 0.76959 0.89548 0.90994 0.94605 0.91811 0.92551 0.93795 0.94811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.63 7.36 59.84 0.44 1.07 16 2 N -0.58 -8.17 2.82 -173.21 -0.49 -8.66 16 3 C 0.60 8.32 7.67 -12.63 -0.10 8.22 16 4 O -0.52 -8.49 16.36 5.26 0.09 -8.41 16 5 C -0.29 -3.40 6.51 -35.95 -0.23 -3.63 16 6 C 0.07 0.77 11.56 -17.80 -0.21 0.57 16 7 N -0.26 -3.22 11.54 30.36 0.35 -2.86 16 8 N -0.29 -3.56 12.51 60.35 0.75 -2.80 16 9 S 0.45 4.58 19.07 -107.50 -2.05 2.53 16 10 C 0.13 1.93 3.58 -66.10 -0.24 1.70 16 11 H 0.11 1.68 6.99 -51.93 -0.36 1.32 16 12 C -0.14 -2.08 6.54 -24.47 -0.16 -2.25 16 13 C 0.09 1.76 3.81 -2.41 -0.01 1.75 16 14 N -0.61 -13.35 2.86 -169.93 -0.49 -13.84 16 15 C -0.33 -8.83 10.44 -15.06 -0.16 -8.99 16 16 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 17 C -0.02 -0.51 5.42 -17.43 -0.09 -0.61 16 18 N -0.92 -27.46 13.70 55.49 0.76 -26.70 16 19 Si 1.06 24.29 24.69 -169.99 -4.20 20.09 16 20 H -0.29 -6.35 6.57 56.52 0.37 -5.98 16 21 H -0.29 -5.77 5.78 56.52 0.33 -5.44 16 22 H -0.30 -7.04 7.11 56.52 0.40 -6.64 16 23 C 0.13 2.31 6.30 -3.07 -0.02 2.29 16 24 H 0.07 0.74 8.04 -51.93 -0.42 0.32 16 25 H 0.06 0.64 4.45 -24.42 -0.11 0.54 16 26 H 0.12 1.96 4.31 -51.93 -0.22 1.74 16 27 H 0.21 1.86 8.06 -52.49 -0.42 1.44 16 28 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.04 0.66 3.09 -51.93 -0.16 0.50 16 31 H 0.06 1.33 6.08 -51.93 -0.32 1.01 16 32 H 0.26 7.86 8.73 -40.82 -0.36 7.50 16 33 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.03 0.64 8.04 -51.93 -0.42 0.22 16 LS Contribution 282.48 15.07 4.26 4.26 Total: -1.00 -31.10 282.48 -5.17 -36.27 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -3.38 Total: 0.00 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -0.77 Total: 0.13 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.89 Total: -54.87 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -4.20 Total: 20.09 kcal Atomic # 16 Polarization: 4.58 SS G_CDS: -2.05 Total: 2.53 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.10 -5.17 -36.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032935329.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.401 kcal (2) G-P(sol) polarization free energy of solvation -31.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds