Wall clock time and date at job start Tue Mar 31 2020 05:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31238 * 124.05666 * 2 1 4 4 N 1.27334 * 120.04107 * 180.36775 * 3 2 1 5 5 S 1.56638 * 109.73627 * 359.69945 * 4 3 2 6 6 C 1.38244 * 124.05482 * 179.81950 * 2 1 3 7 7 C 1.47173 * 128.47625 * 359.97073 * 6 2 1 8 8 O 1.21621 * 120.00015 * 359.70657 * 7 6 2 9 9 N 1.34779 * 119.99855 * 179.70333 * 7 6 2 10 10 C 1.46504 * 119.99668 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46966 * 180.02562 * 10 9 7 12 12 H 1.09001 * 112.77951 * 56.27255 * 11 10 9 13 13 C 1.53492 * 113.46722 * 187.05955 * 11 10 9 14 14 C 1.53503 * 83.34380 * 140.84700 * 13 11 10 15 15 N 1.47066 * 113.46558 * 285.49627 * 11 10 9 16 16 C 1.36937 * 136.06113 * 37.83696 * 15 11 10 17 17 H 1.07995 * 120.00001 * 0.02562 * 16 15 11 18 18 C 1.38817 * 120.00320 * 179.97438 * 16 15 11 19 19 N 1.31620 * 119.99557 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99975 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47363 * 60.00463 * 20 18 16 22 22 H 1.48506 * 109.46719 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47174 * 300.00290 * 20 18 16 24 24 H 1.08999 * 109.46977 * 270.18004 * 1 2 3 25 25 H 1.08997 * 109.47433 * 30.17989 * 1 2 3 26 26 H 1.09006 * 109.47121 * 150.18591 * 1 2 3 27 27 H 0.96999 * 119.99977 * 0.02562 * 9 7 6 28 28 H 1.09002 * 109.47023 * 59.99980 * 10 9 7 29 29 H 1.09003 * 109.47215 * 299.99892 * 10 9 7 30 30 H 1.08996 * 114.20649 * 254.43356 * 13 11 10 31 31 H 1.08998 * 114.21061 * 27.06495 * 13 11 10 32 32 H 1.09003 * 113.46532 * 219.15331 * 14 13 11 33 33 H 1.09000 * 113.46688 * 88.71677 * 14 13 11 34 34 H 0.96999 * 119.99537 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5122 0.9981 -0.0071 5 16 3.9366 -0.5096 -0.0070 6 6 2.2812 -1.1453 0.0036 7 6 1.8394 -2.5492 0.0086 8 8 0.6522 -2.8131 0.0154 9 7 2.7505 -3.5424 0.0056 10 6 2.3107 -4.9398 0.0100 11 6 3.5335 -5.8594 0.0060 12 1 4.2100 -5.6656 0.8384 13 6 3.1815 -7.3438 -0.1629 14 6 4.4369 -7.3570 -1.0461 15 7 4.2122 -5.9255 -1.2971 16 6 4.5020 -5.0436 -2.3038 17 1 4.2000 -4.0101 -2.2199 18 6 5.1848 -5.4777 -3.4317 19 7 5.5533 -6.7372 -3.5337 20 14 5.5807 -4.2745 -4.8046 21 1 6.4283 -3.1775 -4.2723 22 1 6.3091 -4.9822 -5.8882 23 1 4.3191 -3.7075 -5.3450 24 1 -0.3633 0.0032 1.0277 25 1 -0.3634 0.8883 -0.5166 26 1 -0.3634 -0.8917 -0.5110 27 1 3.6974 -3.3319 0.0005 28 1 1.7070 -5.1335 -0.8766 29 1 1.7159 -5.1308 0.9033 30 1 3.2717 -7.9312 0.7508 31 1 2.2509 -7.5241 -0.7009 32 1 4.3338 -7.9755 -1.9378 33 1 5.3540 -7.5623 -0.4939 34 1 6.0301 -7.0406 -4.3220 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038062598.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:39 Heat of formation + Delta-G solvation = 93.014723 kcal Electronic energy + Delta-G solvation = -19736.336043 eV Core-core repulsion = 16606.081687 eV Total energy + Delta-G solvation = -3130.254356 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.01212 -39.47638 -38.15695 -34.35775 -33.33073 -32.31109 -29.35687 -28.07278 -27.26406 -26.87828 -23.56239 -22.98153 -21.60286 -20.37960 -19.31474 -18.53546 -17.61419 -16.61170 -16.17322 -15.75181 -15.34160 -14.68348 -14.56007 -14.15309 -13.87411 -13.46136 -13.17842 -13.10604 -13.01040 -12.49040 -12.05191 -11.62941 -11.60370 -11.21385 -11.07973 -10.84365 -10.67180 -10.39715 -10.16410 -9.93820 -9.91873 -9.89471 -9.79311 -9.37284 -8.89636 -8.81133 -6.99612 -5.85740 -3.18994 -0.32335 0.76056 1.40496 1.86829 3.01546 3.15831 3.31889 3.36804 3.38344 3.81047 4.34529 4.49696 4.74281 5.09807 5.20683 5.29810 5.46449 5.47897 5.57873 5.61744 5.79994 5.94876 6.04210 6.20392 6.29883 6.48912 6.54847 6.67362 7.13016 7.29696 7.47490 7.49558 7.61005 7.88193 8.15916 8.93143 9.61063 10.53149 11.31132 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.016423 B = 0.005825 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.567440 B = 4805.393754 C = 5864.604466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.095 3.905 3 N -0.254 5.254 4 N -0.260 5.260 5 S 0.426 5.574 6 C -0.287 4.287 7 C 0.598 3.402 8 O -0.524 6.524 9 N -0.702 5.702 10 C 0.121 3.879 11 C 0.125 3.875 12 H 0.050 0.950 13 C -0.160 4.160 14 C 0.152 3.848 15 N -0.602 5.602 16 C -0.219 4.219 17 H 0.078 0.922 18 C -0.003 4.003 19 N -0.916 5.916 20 Si 0.905 3.095 21 H -0.284 1.284 22 H -0.288 1.288 23 H -0.284 1.284 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.102 0.898 27 H 0.403 0.597 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.026 0.974 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.519 7.167 9.446 13.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.052 4.052 3 N -0.120 5.120 4 N -0.241 5.241 5 S 0.562 5.438 6 C -0.428 4.428 7 C 0.380 3.620 8 O -0.402 6.402 9 N -0.352 5.352 10 C -0.003 4.003 11 C 0.017 3.983 12 H 0.067 0.933 13 C -0.199 4.199 14 C 0.026 3.974 15 N -0.328 5.328 16 C -0.346 4.346 17 H 0.096 0.904 18 C -0.200 4.200 19 N -0.562 5.562 20 Si 0.735 3.265 21 H -0.210 1.210 22 H -0.214 1.214 23 H -0.211 1.211 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.120 0.880 27 H 0.237 0.763 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.564 8.180 9.090 13.053 hybrid contribution -0.279 0.229 -0.820 0.896 sum -4.843 8.409 8.270 12.750 Atomic orbital electron populations 1.20506 0.83834 1.04969 1.04175 1.22935 1.00184 0.85078 0.96990 1.70606 0.97016 1.28069 1.16340 1.78813 1.09421 1.16062 1.19790 1.82803 1.09766 1.00965 1.50220 1.27884 0.98045 1.00353 1.16490 1.16437 0.86099 0.81880 0.77536 1.90778 1.15778 1.83064 1.50582 1.45896 1.09452 1.06823 1.73004 1.21967 0.98325 0.78085 1.01888 1.22451 0.91696 0.93233 0.90884 0.93265 1.23663 1.01047 0.95146 1.00020 1.22032 0.91951 0.87167 0.96249 1.45652 1.66053 1.07099 1.13949 1.18740 1.31265 0.90421 0.94218 0.90447 1.24758 1.00561 0.96422 0.98271 1.69807 1.43381 1.13877 1.29116 0.86322 0.78180 0.80082 0.81955 1.21021 1.21382 1.21060 0.89490 0.90044 0.87980 0.76257 0.90460 0.91615 0.92247 0.90114 0.90929 0.95607 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 9.89 36.01 0.36 -0.47 16 2 C 0.10 1.31 7.00 -82.84 -0.58 0.73 16 3 N -0.25 -3.72 11.54 33.42 0.39 -3.33 16 4 N -0.26 -3.74 12.51 60.35 0.75 -2.99 16 5 S 0.43 5.38 23.05 -107.50 -2.48 2.91 16 6 C -0.29 -4.07 6.81 -35.95 -0.24 -4.32 16 7 C 0.60 9.46 7.80 -12.63 -0.10 9.37 16 8 O -0.52 -9.26 14.90 5.26 0.08 -9.19 16 9 N -0.70 -11.04 5.33 -61.46 -0.33 -11.36 16 10 C 0.12 1.99 5.52 -4.04 -0.02 1.97 16 11 C 0.13 2.22 4.10 -72.40 -0.30 1.92 16 12 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 13 C -0.16 -2.69 8.03 -26.22 -0.21 -2.90 16 14 C 0.15 3.28 7.39 -8.50 -0.06 3.22 16 15 N -0.60 -13.83 3.65 -176.99 -0.65 -14.48 16 16 C -0.22 -5.60 10.55 -15.06 -0.16 -5.76 16 17 H 0.08 1.88 7.51 -52.49 -0.39 1.48 16 18 C 0.00 -0.08 5.50 -17.43 -0.10 -0.17 16 19 N -0.92 -26.01 11.51 55.49 0.64 -25.37 16 20 Si 0.90 21.33 29.55 -169.99 -5.02 16.31 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.10 1.25 6.48 -51.93 -0.34 0.91 16 27 H 0.40 6.06 7.81 -40.82 -0.32 5.74 16 28 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.35 8.12 -51.93 -0.42 0.93 16 32 H 0.07 1.78 7.13 -51.93 -0.37 1.41 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 308.29 15.07 4.65 4.65 Total: -1.00 -30.36 308.29 -7.32 -37.68 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -3.93 Total: 1.60 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -1.41 Total: 3.58 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.81 Total: -57.53 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 5.38 SS G_CDS: -2.48 Total: 2.91 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.36 -7.32 -37.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038062598.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.694 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds