Wall clock time and date at job start Tue Mar 31 2020 05:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 110.64259 * 2 1 4 4 C 1.34780 * 119.99960 * 61.68914 * 3 2 1 5 5 O 1.21567 * 119.99911 * 359.97438 * 4 3 2 6 6 C 1.47753 * 119.99897 * 179.97438 * 4 3 2 7 7 C 1.39351 * 124.11379 * 179.72040 * 6 4 3 8 8 N 1.30087 * 112.14237 * 179.84626 * 7 6 4 9 9 S 1.55924 * 108.75408 * 0.40784 * 8 7 6 10 10 N 1.31491 * 124.11671 * 0.02759 * 6 4 3 11 11 C 1.55159 * 110.71889 * 236.66134 * 2 1 3 12 12 C 1.54909 * 101.57990 * 206.13300 * 11 2 1 13 13 N 1.47743 * 104.83995 * 37.09908 * 12 11 2 14 14 C 1.36946 * 125.82120 * 155.82347 * 13 12 11 15 15 H 1.08000 * 119.99920 * 179.90231 * 14 13 12 16 16 C 1.38814 * 119.99867 * 359.91271 * 14 13 12 17 17 N 1.31617 * 119.99930 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99829 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47087 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47426 * 119.99468 * 18 16 14 21 21 H 1.48497 * 109.47269 * 239.99725 * 18 16 14 22 22 C 1.47020 * 108.53125 * 335.74644 * 13 12 11 23 23 H 1.08993 * 109.46725 * 298.31411 * 1 2 3 24 24 H 1.08998 * 109.46836 * 58.30728 * 1 2 3 25 25 H 1.08996 * 109.47021 * 178.31126 * 1 2 3 26 26 H 0.96999 * 119.99801 * 241.69023 * 3 2 1 27 27 H 1.08005 * 123.92781 * 0.02562 * 7 6 4 28 28 H 1.08994 * 111.00854 * 324.21346 * 11 2 1 29 29 H 1.09001 * 110.99961 * 88.02474 * 11 2 1 30 30 H 1.09003 * 110.36363 * 155.85234 * 12 11 2 31 31 H 1.09001 * 110.36855 * 278.17084 * 12 11 2 32 32 H 0.96998 * 119.99524 * 180.02562 * 17 16 14 33 33 H 1.09002 * 109.88367 * 241.68734 * 22 13 12 34 34 H 1.09000 * 109.88319 * 120.67352 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0465 1.3710 0.0000 4 6 1.7661 2.1967 1.0276 5 8 1.0842 1.8041 1.9543 6 6 2.2874 3.5792 1.0279 7 6 2.0463 4.5052 2.0409 8 7 2.6189 5.6494 1.8058 9 16 3.3712 5.5628 0.4428 10 7 3.0306 4.0874 0.0695 11 6 2.0790 -0.7976 -1.2124 12 6 3.4633 -1.2509 -0.6854 13 7 3.2438 -1.5522 0.7443 14 6 4.0005 -2.3982 1.5105 15 1 3.7554 -2.5487 2.5515 16 6 5.0827 -3.0621 0.9492 17 7 5.3811 -2.8789 -0.3196 18 14 6.1153 -4.2155 1.9945 19 1 5.5758 -4.2466 3.3777 20 1 6.0713 -5.5820 1.4148 21 1 7.5199 -3.7346 2.0222 22 6 2.0760 -0.7891 1.2086 23 1 -0.3632 0.4874 0.9047 24 1 -0.3633 0.5399 -0.8744 25 1 -0.3633 -1.0272 -0.0303 26 1 2.5903 1.6843 -0.7396 27 1 1.4554 4.2963 2.9205 28 1 1.4452 -1.6560 -1.4347 29 1 2.1844 -0.1555 -2.0870 30 1 3.7960 -2.1447 -1.2133 31 1 4.1932 -0.4492 -0.7977 32 1 6.1371 -3.3431 -0.7118 33 1 2.3741 -0.0990 1.9979 34 1 1.3120 -1.4712 1.5817 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046157678.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:56 Heat of formation + Delta-G solvation = 33.609600 kcal Electronic energy + Delta-G solvation = -20173.151410 eV Core-core repulsion = 17040.321055 eV Total energy + Delta-G solvation = -3132.830355 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.22793 -40.81257 -38.74025 -35.81607 -34.79114 -33.49284 -31.67343 -30.39224 -28.44270 -27.54076 -25.53740 -24.36739 -22.31527 -21.67826 -20.73424 -20.08642 -19.17842 -18.53793 -17.16915 -17.13314 -16.68984 -16.43057 -15.79634 -15.51808 -15.45167 -14.80664 -14.26055 -14.04558 -13.61030 -13.34961 -13.25786 -13.13379 -12.84356 -12.79123 -12.48669 -12.26233 -12.11762 -12.07797 -12.02620 -11.95158 -11.68906 -11.58566 -10.91324 -10.76320 -10.27833 -10.03626 -8.88489 -7.79231 -5.22310 -0.65494 0.34543 0.46667 0.63844 1.45431 1.45766 1.56520 1.96871 2.09748 2.48275 3.30540 3.38958 3.56464 3.69655 3.78168 4.00906 4.04380 4.16283 4.47142 4.64164 4.67062 4.78476 4.86415 4.92130 5.03567 5.08275 5.29807 5.36829 5.43678 5.58190 5.63359 5.79275 6.30073 6.45705 7.04540 7.11306 7.76629 8.40736 9.23036 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.020840 B = 0.004745 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.242714 B = 5899.940239 C = 6414.624487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.167 3.833 3 N -0.685 5.685 4 C 0.602 3.398 5 O -0.545 6.545 6 C -0.004 4.004 7 C 0.089 3.911 8 N -0.597 5.597 9 S 0.797 5.203 10 N -0.567 5.567 11 C -0.127 4.127 12 C 0.154 3.846 13 N -0.624 5.624 14 C -0.239 4.239 15 H 0.073 0.927 16 C -0.062 4.062 17 N -0.946 5.946 18 Si 0.978 3.022 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.292 1.292 22 C 0.134 3.866 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.412 0.588 27 H 0.225 0.775 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.077 0.923 31 H -0.012 1.012 32 H 0.248 0.752 33 H 0.012 0.988 34 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.566 16.508 -2.945 18.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.081 3.919 3 N -0.336 5.336 4 C 0.383 3.617 5 O -0.423 6.423 6 C -0.177 4.177 7 C -0.103 4.103 8 N -0.439 5.439 9 S 0.838 5.162 10 N -0.419 5.419 11 C -0.165 4.165 12 C 0.030 3.970 13 N -0.350 5.350 14 C -0.368 4.368 15 H 0.091 0.909 16 C -0.255 4.255 17 N -0.595 5.595 18 Si 0.806 3.194 19 H -0.196 1.196 20 H -0.213 1.213 21 H -0.219 1.219 22 C 0.008 3.992 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.248 0.752 27 H 0.241 0.759 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.006 0.994 32 H 0.058 0.942 33 H 0.030 0.970 34 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.769 17.530 -3.284 19.076 hybrid contribution 0.245 -1.804 1.244 2.205 sum -6.525 15.726 -2.040 17.147 Atomic orbital electron populations 1.21972 0.91417 1.03294 1.03162 1.21315 0.94794 0.79904 0.95877 1.45773 1.52856 1.11859 1.23065 1.16977 0.79740 0.82602 0.82382 1.90778 1.39847 1.75850 1.35806 1.22323 1.03084 0.98808 0.93506 1.23832 0.99486 0.85483 1.01510 1.72171 1.18734 1.29015 1.23965 1.78683 1.34275 1.00808 1.02459 1.72257 1.18537 1.18581 1.32542 1.23205 0.97554 0.99753 0.96029 1.21796 0.92319 0.98559 0.84350 1.44864 1.31535 1.50261 1.08335 1.19433 1.07047 1.17125 0.93246 0.90946 1.25548 0.99899 1.02306 0.97709 1.70019 1.30283 1.47041 1.12203 0.85020 0.78008 0.78285 0.78078 1.19619 1.21308 1.21920 1.21709 0.89286 0.92855 0.95345 0.91903 0.90380 0.90654 0.75161 0.75897 0.89191 0.88401 0.90535 0.99369 0.94223 0.96954 0.95205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 8.40 71.98 0.60 -3.36 16 2 C 0.17 5.77 0.81 4.79 0.00 5.77 16 3 N -0.68 -21.92 5.15 -420.45 -2.16 -24.09 16 4 C 0.60 19.42 7.04 86.76 0.61 20.03 16 5 O -0.55 -19.87 13.75 -3.93 -0.05 -19.93 16 6 C 0.00 -0.12 6.81 41.98 0.29 0.17 16 7 C 0.09 2.03 11.22 85.22 0.96 2.99 16 8 N -0.60 -12.55 11.41 -92.46 -1.05 -13.61 16 9 S 0.80 13.42 23.69 -56.49 -1.34 12.08 16 10 N -0.57 -13.56 11.00 -80.62 -0.89 -14.45 16 11 C -0.13 -4.39 6.09 31.99 0.19 -4.20 16 12 C 0.15 7.45 5.89 86.79 0.51 7.97 16 13 N -0.62 -33.03 3.41 -691.16 -2.35 -35.39 16 14 C -0.24 -13.90 10.28 84.03 0.86 -13.04 16 15 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 16 C -0.06 -3.56 5.49 84.86 0.47 -3.09 16 17 N -0.95 -56.16 10.11 21.65 0.22 -55.95 16 18 Si 0.98 46.45 29.55 68.60 2.03 48.47 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 C 0.13 6.01 6.12 86.73 0.53 6.54 16 23 H 0.06 1.93 6.43 -2.39 -0.02 1.91 16 24 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16 26 H 0.41 12.16 8.07 -92.71 -0.75 11.41 16 27 H 0.22 4.40 8.06 -2.91 -0.02 4.37 16 28 H 0.09 2.96 8.04 -2.39 -0.02 2.94 16 29 H 0.10 2.75 8.05 -2.39 -0.02 2.73 16 30 H 0.08 4.20 5.88 -2.39 -0.01 4.19 16 31 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 32 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 33 H 0.01 0.61 6.48 -2.39 -0.02 0.59 16 34 H 0.03 1.34 7.82 -2.39 -0.02 1.32 16 Total: -1.00 -70.15 296.92 -0.18 -70.33 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.40 Total: 12.75 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: 5.03 Total: 19.78 kcal Atomic # 7 Polarization: -137.24 SS G_CDS: -6.24 Total: -143.48 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.05 Total: -19.93 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 16 Polarization: 13.42 SS G_CDS: -1.34 Total: 12.08 kcal Total: -70.15 -0.18 -70.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046157678.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.940 kcal (2) G-P(sol) polarization free energy of solvation -70.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds